Strain Fitness in Escherichia coli BL21 around ECD_01625

Experiment: Laval1259

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01623 and ECD_01624 are separated by 50 nucleotidesECD_01624 and ECD_01625 are separated by 333 nucleotidesECD_01625 and ECD_01626 are separated by 127 nucleotidesECD_01626 and ECD_01627 are separated by 234 nucleotides ECD_01623: ECD_01623 - putative ATP-dependent helicase, at 1,674,283 to 1,678,899 _01623 ECD_01624: ECD_01624 - glutaredoxin-4, at 1,678,950 to 1,679,297 _01624 ECD_01625: ECD_01625 - murein DD-endopeptidase, space-maker hydrolase, at 1,679,631 to 1,680,446 _01625 ECD_01626: ECD_01626 - superoxide dismutase, Fe, at 1,680,574 to 1,681,155 _01626 ECD_01627: ECD_01627 - putative MFS transporter, inner membrane protein, at 1,681,390 to 1,682,559 _01627 Position (kb) 1679 1680 1681Strain fitness (log2 ratio) -1 0 1at 1678.817 kb on + strandat 1678.979 kb on - strandat 1679.027 kb on - strand, within ECD_01624at 1679.100 kb on - strand, within ECD_01624at 1679.153 kb on - strand, within ECD_01624at 1680.153 kb on + strand, within ECD_01625at 1680.208 kb on - strand, within ECD_01625at 1680.239 kb on + strand, within ECD_01625at 1680.556 kb on + strandat 1681.063 kb on + strand, within ECD_01626at 1681.063 kb on + strand, within ECD_01626

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
remove
1,678,817 + +0.7
1,678,979 - +1.0
1,679,027 - ECD_01624 0.22 +0.2
1,679,100 - ECD_01624 0.43 +0.3
1,679,153 - ECD_01624 0.58 +0.2
1,680,153 + ECD_01625 0.64 -0.5
1,680,208 - ECD_01625 0.71 -1.3
1,680,239 + ECD_01625 0.75 +0.7
1,680,556 + -0.7
1,681,063 + ECD_01626 0.84 +1.1
1,681,063 + ECD_01626 0.84 -0.0

Or see this region's nucleotide sequence