Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01603 and ECD_01604 are separated by 610 nucleotides ECD_01604 and ECD_01605 are separated by 105 nucleotides ECD_01605 and ECD_01606 are separated by 43 nucleotides
ECD_01603: ECD_01603 - DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III), at 1,656,719 to 1,657,354
_01603
ECD_01604: ECD_01604 - dipeptide and tripeptide permease A, at 1,657,965 to 1,659,467
_01604
ECD_01605: ECD_01605 - glutathionine S-transferase, at 1,659,573 to 1,660,178
_01605
ECD_01606: ECD_01606 - pyridoxamine kinase, at 1,660,222 to 1,661,085
_01606
Position (kb) 1657
1658
1659
1660 Strain fitness (log2 ratio) -1
0
1
2 at 1657.908 kb on + strand at 1658.034 kb on + strand at 1658.203 kb on + strand, within ECD_01604 at 1658.318 kb on + strand, within ECD_01604 at 1658.351 kb on + strand, within ECD_01604 at 1658.385 kb on + strand, within ECD_01604 at 1658.427 kb on + strand, within ECD_01604 at 1658.462 kb on + strand, within ECD_01604 at 1658.609 kb on + strand, within ECD_01604 at 1660.068 kb on + strand, within ECD_01605
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 1,657,908 + -0.7 1,658,034 + +1.1 1,658,203 + ECD_01604 0.16 -0.9 1,658,318 + ECD_01604 0.23 +0.2 1,658,351 + ECD_01604 0.26 +0.8 1,658,385 + ECD_01604 0.28 +0.5 1,658,427 + ECD_01604 0.31 +2.3 1,658,462 + ECD_01604 0.33 +0.2 1,658,609 + ECD_01604 0.43 +0.7 1,660,068 + ECD_01605 0.82 +1.5
Or see this region's nucleotide sequence