Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01262 and ECD_01263 are separated by 234 nucleotides ECD_01263 and ECD_01264 are separated by 67 nucleotides
ECD_01262: ECD_01262 - cyclic-di-GMP phosphodiesterase; csgD regulator; modulator of RNase II stability, at 1,331,125 to 1,333,110
_01262
ECD_01263: ECD_01263 - ribonuclease II, at 1,333,345 to 1,335,279
_01263
ECD_01264: ECD_01264 - putative oxidoreductase, at 1,335,347 to 1,336,474
_01264
Position (kb)
1333
1334
1335
1336 Strain fitness (log2 ratio)
-2
-1
0
1 at 1332.564 kb on - strand, within ECD_01262 at 1332.640 kb on - strand, within ECD_01262 at 1333.632 kb on - strand, within ECD_01263 at 1333.632 kb on - strand, within ECD_01263 at 1333.776 kb on - strand, within ECD_01263 at 1334.032 kb on - strand, within ECD_01263 at 1334.042 kb on + strand, within ECD_01263 at 1334.043 kb on - strand, within ECD_01263 at 1334.043 kb on - strand, within ECD_01263 at 1334.832 kb on - strand, within ECD_01263 at 1334.850 kb on - strand, within ECD_01263 at 1334.914 kb on - strand, within ECD_01263 at 1335.203 kb on - strand at 1335.421 kb on + strand at 1335.694 kb on + strand, within ECD_01264 at 1335.992 kb on + strand, within ECD_01264 at 1336.054 kb on + strand, within ECD_01264 at 1336.083 kb on + strand, within ECD_01264 at 1336.147 kb on + strand, within ECD_01264 at 1336.168 kb on + strand, within ECD_01264 at 1336.168 kb on + strand, within ECD_01264
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 1,332,564 - ECD_01262 0.72 +0.7 1,332,640 - ECD_01262 0.76 +0.5 1,333,632 - ECD_01263 0.15 -2.2 1,333,632 - ECD_01263 0.15 -1.0 1,333,776 - ECD_01263 0.22 +0.5 1,334,032 - ECD_01263 0.36 -0.9 1,334,042 + ECD_01263 0.36 -0.1 1,334,043 - ECD_01263 0.36 -1.8 1,334,043 - ECD_01263 0.36 -0.3 1,334,832 - ECD_01263 0.77 +0.7 1,334,850 - ECD_01263 0.78 -1.0 1,334,914 - ECD_01263 0.81 +0.1 1,335,203 - -0.5 1,335,421 + +1.4 1,335,694 + ECD_01264 0.31 +0.4 1,335,992 + ECD_01264 0.57 +1.6 1,336,054 + ECD_01264 0.63 +0.5 1,336,083 + ECD_01264 0.65 +1.1 1,336,147 + ECD_01264 0.71 -1.7 1,336,168 + ECD_01264 0.73 +0.3 1,336,168 + ECD_01264 0.73 +0.5
Or see this region's nucleotide sequence