Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01084 and ECD_01085 are separated by 51 nucleotides ECD_01085 and ECD_01086 are separated by 80 nucleotides ECD_01086 and ECD_01087 are separated by 67 nucleotides
ECD_01084: ECD_01084 - DUF177 family protein, at 1,149,361 to 1,149,882
_01084
ECD_01085: ECD_01085 - 50S ribosomal subunit protein L32, at 1,149,934 to 1,150,107
_01085
ECD_01086: ECD_01086 - putative phosphate acyltransferase, at 1,150,188 to 1,151,258
_01086
ECD_01087: ECD_01087 - 3-oxoacyl-[acyl-carrier-protein] synthase III, at 1,151,326 to 1,152,279
_01087
Position (kb)
1150
1151
1152 Strain fitness (log2 ratio)
-2
-1
0
1 at 1149.209 kb on + strand at 1149.377 kb on + strand at 1149.402 kb on + strand at 1149.432 kb on + strand, within ECD_01084 at 1149.436 kb on + strand, within ECD_01084 at 1149.436 kb on + strand, within ECD_01084 at 1149.436 kb on + strand, within ECD_01084 at 1149.613 kb on + strand, within ECD_01084 at 1149.613 kb on + strand, within ECD_01084 at 1149.622 kb on + strand, within ECD_01084 at 1149.622 kb on + strand, within ECD_01084 at 1149.880 kb on + strand at 1150.210 kb on + strand at 1151.298 kb on + strand at 1151.298 kb on + strand at 1151.298 kb on + strand at 1151.300 kb on + strand at 1151.300 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 1,149,209 + +0.3 1,149,377 + -2.3 1,149,402 + -1.4 1,149,432 + ECD_01084 0.14 -1.3 1,149,436 + ECD_01084 0.14 -2.4 1,149,436 + ECD_01084 0.14 -1.4 1,149,436 + ECD_01084 0.14 -2.0 1,149,613 + ECD_01084 0.48 -0.0 1,149,613 + ECD_01084 0.48 -1.5 1,149,622 + ECD_01084 0.50 -1.7 1,149,622 + ECD_01084 0.50 -2.4 1,149,880 + -2.4 1,150,210 + -0.7 1,151,298 + +0.1 1,151,298 + +0.5 1,151,298 + -0.1 1,151,300 + +1.1 1,151,300 + -0.6
Or see this region's nucleotide sequence