Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00874 and ECD_00875 are separated by 10 nucleotides ECD_00875 and ECD_00876 are separated by 36 nucleotides
ECD_00874: ECD_00874 - putative NAD-dependent oxidoreductase, at 911,556 to 912,986
_00874
ECD_00875: ECD_00875 - L-allo-threonine aldolase, PLP-dependent, at 912,997 to 913,998
_00875
ECD_00876: ECD_00876 - pyruvate dehydrogenase, thiamine triphosphate-binding, FAD-binding, at 914,035 to 915,753
_00876
Position (kb) 912
913
914 Strain fitness (log2 ratio) -2
-1
0
1
2 at 912.237 kb on - strand, within ECD_00874 at 912.237 kb on - strand, within ECD_00874 at 912.402 kb on + strand, within ECD_00874 at 912.497 kb on - strand, within ECD_00874 at 912.497 kb on - strand, within ECD_00874 at 912.573 kb on + strand, within ECD_00874 at 912.949 kb on + strand at 912.949 kb on + strand at 913.122 kb on - strand, within ECD_00875 at 913.171 kb on - strand, within ECD_00875 at 913.171 kb on - strand, within ECD_00875 at 913.171 kb on - strand, within ECD_00875 at 913.171 kb on - strand, within ECD_00875 at 913.171 kb on - strand, within ECD_00875 at 913.173 kb on + strand, within ECD_00875 at 913.173 kb on + strand, within ECD_00875 at 913.174 kb on - strand, within ECD_00875 at 913.267 kb on - strand, within ECD_00875 at 913.280 kb on + strand, within ECD_00875 at 913.281 kb on - strand, within ECD_00875 at 913.281 kb on - strand, within ECD_00875 at 913.357 kb on - strand, within ECD_00875 at 913.439 kb on + strand, within ECD_00875 at 913.469 kb on + strand, within ECD_00875 at 913.770 kb on + strand, within ECD_00875 at 913.771 kb on - strand, within ECD_00875 at 913.772 kb on + strand, within ECD_00875 at 913.772 kb on + strand, within ECD_00875 at 913.773 kb on - strand, within ECD_00875 at 913.773 kb on - strand, within ECD_00875 at 913.891 kb on - strand, within ECD_00875 at 914.013 kb on - strand at 914.013 kb on - strand at 914.106 kb on + strand at 914.106 kb on + strand at 914.107 kb on - strand at 914.109 kb on - strand at 914.115 kb on + strand at 914.309 kb on - strand, within ECD_00876 at 914.581 kb on + strand, within ECD_00876 at 914.631 kb on + strand, within ECD_00876
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 912,237 - ECD_00874 0.48 -0.3 912,237 - ECD_00874 0.48 +0.9 912,402 + ECD_00874 0.59 -0.2 912,497 - ECD_00874 0.66 +0.3 912,497 - ECD_00874 0.66 +0.3 912,573 + ECD_00874 0.71 -0.3 912,949 + -2.1 912,949 + +0.3 913,122 - ECD_00875 0.12 +0.5 913,171 - ECD_00875 0.17 -0.1 913,171 - ECD_00875 0.17 -0.7 913,171 - ECD_00875 0.17 -0.6 913,171 - ECD_00875 0.17 -0.1 913,171 - ECD_00875 0.17 -1.0 913,173 + ECD_00875 0.18 -0.4 913,173 + ECD_00875 0.18 -0.6 913,174 - ECD_00875 0.18 -0.8 913,267 - ECD_00875 0.27 -0.4 913,280 + ECD_00875 0.28 -0.1 913,281 - ECD_00875 0.28 -0.1 913,281 - ECD_00875 0.28 -0.4 913,357 - ECD_00875 0.36 +0.4 913,439 + ECD_00875 0.44 +0.1 913,469 + ECD_00875 0.47 -0.0 913,770 + ECD_00875 0.77 +0.9 913,771 - ECD_00875 0.77 -0.7 913,772 + ECD_00875 0.77 +0.4 913,772 + ECD_00875 0.77 -1.9 913,773 - ECD_00875 0.77 -0.4 913,773 - ECD_00875 0.77 +0.2 913,891 - ECD_00875 0.89 -0.3 914,013 - -0.4 914,013 - +0.4 914,106 + +2.0 914,106 + +0.3 914,107 - +1.0 914,109 - +0.2 914,115 + -0.2 914,309 - ECD_00876 0.16 -0.6 914,581 + ECD_00876 0.32 -0.4 914,631 + ECD_00876 0.35 -0.0
Or see this region's nucleotide sequence