Strain Fitness in Escherichia coli BL21 around ECD_00580

Experiment: Laval1259

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00579 and ECD_00580 are separated by 113 nucleotidesECD_00580 and ECD_00581 are separated by 50 nucleotidesECD_00581 and ECD_00582 overlap by 26 nucleotides ECD_00579: ECD_00579 - ribonuclease I, at 604,027 to 604,833 _00579 ECD_00580: ECD_00580 - citrate/succinate antiporter; citrate carrier, at 604,947 to 606,410 _00580 ECD_00581: ECD_00581 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase, at 606,461 to 607,339 _00581 ECD_00582: ECD_00582 - apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, at 607,314 to 607,865 _00582 Position (kb) 604 605 606 607Strain fitness (log2 ratio) -2 -1 0 1 2at 603.963 kb on - strandat 603.963 kb on - strandat 603.967 kb on - strandat 603.990 kb on - strandat 604.068 kb on + strandat 604.069 kb on - strandat 604.158 kb on - strand, within ECD_00579at 604.181 kb on - strand, within ECD_00579at 604.186 kb on - strand, within ECD_00579at 604.263 kb on - strand, within ECD_00579at 604.319 kb on - strand, within ECD_00579at 604.319 kb on - strand, within ECD_00579at 604.335 kb on - strand, within ECD_00579at 604.604 kb on - strand, within ECD_00579at 604.724 kb on + strand, within ECD_00579at 604.724 kb on + strand, within ECD_00579at 604.725 kb on - strand, within ECD_00579at 604.743 kb on - strand, within ECD_00579at 604.852 kb on - strandat 604.852 kb on - strandat 604.856 kb on - strandat 604.856 kb on - strandat 604.856 kb on - strandat 604.856 kb on - strandat 604.865 kb on - strandat 604.868 kb on - strandat 604.868 kb on - strandat 604.948 kb on + strandat 604.949 kb on - strandat 604.992 kb on - strandat 604.999 kb on + strandat 605.062 kb on + strandat 605.063 kb on - strandat 605.155 kb on - strand, within ECD_00580at 605.165 kb on + strand, within ECD_00580at 605.166 kb on - strand, within ECD_00580at 605.234 kb on - strand, within ECD_00580at 605.234 kb on - strand, within ECD_00580at 605.234 kb on - strand, within ECD_00580at 605.234 kb on - strand, within ECD_00580at 605.246 kb on - strand, within ECD_00580at 605.303 kb on + strand, within ECD_00580at 605.405 kb on + strand, within ECD_00580at 605.529 kb on + strand, within ECD_00580at 605.530 kb on - strand, within ECD_00580at 605.530 kb on - strand, within ECD_00580at 605.530 kb on - strand, within ECD_00580at 605.666 kb on + strand, within ECD_00580at 605.666 kb on + strand, within ECD_00580at 605.667 kb on - strand, within ECD_00580at 605.810 kb on + strand, within ECD_00580at 605.811 kb on - strand, within ECD_00580at 605.844 kb on - strand, within ECD_00580at 605.877 kb on - strand, within ECD_00580at 605.877 kb on - strand, within ECD_00580at 605.946 kb on - strand, within ECD_00580at 606.155 kb on + strand, within ECD_00580at 606.196 kb on + strand, within ECD_00580at 606.231 kb on - strand, within ECD_00580at 606.379 kb on - strandat 606.379 kb on - strandat 606.388 kb on - strandat 606.388 kb on - strandat 606.390 kb on - strandat 606.686 kb on + strand, within ECD_00581at 606.686 kb on + strand, within ECD_00581at 606.722 kb on + strand, within ECD_00581at 606.723 kb on - strand, within ECD_00581at 606.747 kb on + strand, within ECD_00581at 606.747 kb on + strand, within ECD_00581at 606.748 kb on - strand, within ECD_00581at 606.829 kb on - strand, within ECD_00581at 606.860 kb on - strand, within ECD_00581at 606.984 kb on - strand, within ECD_00581at 607.003 kb on + strand, within ECD_00581at 607.036 kb on + strand, within ECD_00581at 607.036 kb on + strand, within ECD_00581at 607.037 kb on - strand, within ECD_00581at 607.184 kb on - strand, within ECD_00581at 607.184 kb on - strand, within ECD_00581

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
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603,963 - +0.7
603,963 - -0.1
603,967 - +0.2
603,990 - +0.2
604,068 + +0.4
604,069 - +0.2
604,158 - ECD_00579 0.16 -0.1
604,181 - ECD_00579 0.19 -0.8
604,186 - ECD_00579 0.20 -0.0
604,263 - ECD_00579 0.29 +0.1
604,319 - ECD_00579 0.36 +0.1
604,319 - ECD_00579 0.36 +0.3
604,335 - ECD_00579 0.38 -1.2
604,604 - ECD_00579 0.71 +0.8
604,724 + ECD_00579 0.86 -0.8
604,724 + ECD_00579 0.86 +1.4
604,725 - ECD_00579 0.86 -0.6
604,743 - ECD_00579 0.89 +0.4
604,852 - -0.1
604,852 - -0.1
604,856 - -0.2
604,856 - -0.5
604,856 - +0.3
604,856 - -0.4
604,865 - -0.6
604,868 - -0.8
604,868 - +0.2
604,948 + +0.8
604,949 - +0.6
604,992 - -2.6
604,999 + +0.7
605,062 + +1.5
605,063 - -1.2
605,155 - ECD_00580 0.14 +0.2
605,165 + ECD_00580 0.15 +0.3
605,166 - ECD_00580 0.15 -0.5
605,234 - ECD_00580 0.20 -0.2
605,234 - ECD_00580 0.20 -0.0
605,234 - ECD_00580 0.20 +0.5
605,234 - ECD_00580 0.20 +1.0
605,246 - ECD_00580 0.20 +0.9
605,303 + ECD_00580 0.24 +0.9
605,405 + ECD_00580 0.31 +0.5
605,529 + ECD_00580 0.40 -1.8
605,530 - ECD_00580 0.40 +0.5
605,530 - ECD_00580 0.40 +0.8
605,530 - ECD_00580 0.40 +0.1
605,666 + ECD_00580 0.49 +1.5
605,666 + ECD_00580 0.49 +1.0
605,667 - ECD_00580 0.49 -0.2
605,810 + ECD_00580 0.59 +2.7
605,811 - ECD_00580 0.59 -0.0
605,844 - ECD_00580 0.61 +0.3
605,877 - ECD_00580 0.64 +1.2
605,877 - ECD_00580 0.64 -0.4
605,946 - ECD_00580 0.68 +0.3
606,155 + ECD_00580 0.83 -0.9
606,196 + ECD_00580 0.85 +0.6
606,231 - ECD_00580 0.88 +0.1
606,379 - +0.4
606,379 - +0.6
606,388 - -0.6
606,388 - +0.7
606,390 - -0.4
606,686 + ECD_00581 0.26 +1.2
606,686 + ECD_00581 0.26 -0.8
606,722 + ECD_00581 0.30 +1.1
606,723 - ECD_00581 0.30 +0.3
606,747 + ECD_00581 0.33 +0.6
606,747 + ECD_00581 0.33 -0.6
606,748 - ECD_00581 0.33 +0.8
606,829 - ECD_00581 0.42 +0.9
606,860 - ECD_00581 0.45 -1.3
606,984 - ECD_00581 0.59 -0.8
607,003 + ECD_00581 0.62 +0.8
607,036 + ECD_00581 0.65 +0.0
607,036 + ECD_00581 0.65 -0.6
607,037 - ECD_00581 0.66 +0.1
607,184 - ECD_00581 0.82 -0.3
607,184 - ECD_00581 0.82 +0.3

Or see this region's nucleotide sequence