Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00339 and ECD_00340 are separated by 167 nucleotides ECD_00340 and ECD_00341 overlap by 82 nucleotides ECD_00341 and ECD_00342 are separated by 69 nucleotides ECD_00342 and ECD_00343 are separated by 124 nucleotides
ECD_00339: ECD_00339 - hypothetical protein, at 373,294 to 373,575
_00339
ECD_00340: ECD_00340 - IS1 protein InsB, at 373,743 to 374,246
_00340
ECD_00341: ECD_00341 - IS1 protein InsA, at 374,165 to 374,440
_00341
ECD_00342: ECD_00342 - nucleoid-associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function, at 374,510 to 375,421
_00342
ECD_00343: ECD_00343 - manno(fructo)kinase, at 375,546 to 376,454
_00343
Position (kb) 374
375
376 Strain fitness (log2 ratio) -2
-1
0
1 at 373.616 kb on + strand at 373.616 kb on + strand at 373.616 kb on + strand at 373.617 kb on - strand at 373.617 kb on - strand at 373.654 kb on - strand at 373.659 kb on + strand at 373.660 kb on - strand at 374.465 kb on + strand at 374.512 kb on - strand at 374.512 kb on - strand at 374.531 kb on + strand at 374.873 kb on - strand, within ECD_00342 at 374.931 kb on - strand, within ECD_00342 at 374.957 kb on - strand, within ECD_00342 at 374.975 kb on - strand, within ECD_00342 at 375.011 kb on - strand, within ECD_00342 at 375.011 kb on - strand, within ECD_00342 at 375.131 kb on - strand, within ECD_00342 at 375.181 kb on + strand, within ECD_00342 at 375.226 kb on + strand, within ECD_00342 at 375.326 kb on - strand, within ECD_00342 at 375.326 kb on - strand, within ECD_00342 at 375.424 kb on + strand at 375.510 kb on + strand at 375.553 kb on + strand at 375.553 kb on + strand at 375.554 kb on - strand at 375.554 kb on - strand at 375.619 kb on - strand at 375.725 kb on - strand, within ECD_00343 at 375.728 kb on + strand, within ECD_00343 at 375.729 kb on - strand, within ECD_00343 at 375.821 kb on - strand, within ECD_00343 at 375.863 kb on + strand, within ECD_00343 at 375.889 kb on + strand, within ECD_00343 at 375.890 kb on - strand, within ECD_00343 at 375.890 kb on - strand, within ECD_00343 at 375.919 kb on + strand, within ECD_00343 at 376.074 kb on + strand, within ECD_00343 at 376.075 kb on - strand, within ECD_00343 at 376.094 kb on + strand, within ECD_00343 at 376.107 kb on - strand, within ECD_00343 at 376.315 kb on + strand, within ECD_00343 at 376.325 kb on - strand, within ECD_00343
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 373,616 + +0.8 373,616 + +0.4 373,616 + +0.4 373,617 - +0.6 373,617 - +0.9 373,654 - -0.7 373,659 + +0.8 373,660 - +0.0 374,465 + +0.9 374,512 - +0.2 374,512 - -0.3 374,531 + -0.2 374,873 - ECD_00342 0.40 -0.1 374,931 - ECD_00342 0.46 -0.4 374,957 - ECD_00342 0.49 -0.9 374,975 - ECD_00342 0.51 -1.6 375,011 - ECD_00342 0.55 -2.7 375,011 - ECD_00342 0.55 -1.3 375,131 - ECD_00342 0.68 -0.5 375,181 + ECD_00342 0.74 +0.0 375,226 + ECD_00342 0.79 +0.0 375,326 - ECD_00342 0.89 -2.1 375,326 - ECD_00342 0.89 -1.9 375,424 + -0.0 375,510 + +0.9 375,553 + -0.4 375,553 + -0.1 375,554 - -0.8 375,554 - +0.1 375,619 - +0.8 375,725 - ECD_00343 0.20 -0.3 375,728 + ECD_00343 0.20 +0.9 375,729 - ECD_00343 0.20 +0.0 375,821 - ECD_00343 0.30 -0.2 375,863 + ECD_00343 0.35 -0.1 375,889 + ECD_00343 0.38 +1.0 375,890 - ECD_00343 0.38 +1.0 375,890 - ECD_00343 0.38 +0.4 375,919 + ECD_00343 0.41 -0.2 376,074 + ECD_00343 0.58 -0.1 376,075 - ECD_00343 0.58 +0.6 376,094 + ECD_00343 0.60 +0.3 376,107 - ECD_00343 0.62 +0.2 376,315 + ECD_00343 0.85 +0.1 376,325 - ECD_00343 0.86 -0.2
Or see this region's nucleotide sequence