Strain Fitness in Escherichia coli BL21 around ECD_00060

Experiment: Laval1259

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_00059 and ECD_00060 are separated by 116 nucleotidesECD_00060 and ECD_00061 are separated by 11 nucleotides ECD_00059: ECD_00059 - membrane-anchored DnaK co-chaperone, DNA-binding protein, at 61,560 to 62,375 _00059 ECD_00060: ECD_00060 - dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM-dependent, at 62,492 to 63,151 _00060 ECD_00061: ECD_00061 - RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase, at 63,163 to 66,069 _00061 Position (kb) 62 63 64Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 61.511 kb on + strandat 61.511 kb on + strandat 61.511 kb on + strandat 61.513 kb on + strandat 61.513 kb on + strandat 61.525 kb on + strandat 61.557 kb on + strandat 61.557 kb on + strandat 61.557 kb on + strandat 61.557 kb on + strandat 61.558 kb on - strandat 61.559 kb on + strandat 61.559 kb on + strandat 61.567 kb on - strandat 61.633 kb on + strandat 61.642 kb on + strand, within ECD_00059at 61.642 kb on + strand, within ECD_00059at 61.643 kb on - strand, within ECD_00059at 61.677 kb on - strand, within ECD_00059at 61.753 kb on + strand, within ECD_00059at 61.787 kb on + strand, within ECD_00059at 61.949 kb on + strand, within ECD_00059at 62.022 kb on + strand, within ECD_00059at 62.022 kb on + strand, within ECD_00059at 62.180 kb on + strand, within ECD_00059at 62.181 kb on - strand, within ECD_00059at 62.237 kb on + strand, within ECD_00059at 62.237 kb on + strand, within ECD_00059at 62.238 kb on - strand, within ECD_00059at 62.265 kb on - strand, within ECD_00059at 62.340 kb on + strandat 62.340 kb on + strandat 62.341 kb on - strandat 62.369 kb on + strandat 62.388 kb on - strandat 62.513 kb on - strandat 62.521 kb on + strandat 62.521 kb on + strandat 62.521 kb on + strandat 62.522 kb on - strandat 62.525 kb on - strandat 62.568 kb on - strand, within ECD_00060at 62.611 kb on - strand, within ECD_00060at 62.650 kb on + strand, within ECD_00060at 62.650 kb on + strand, within ECD_00060at 62.651 kb on - strand, within ECD_00060at 62.722 kb on - strand, within ECD_00060at 62.736 kb on + strand, within ECD_00060at 62.736 kb on + strand, within ECD_00060at 62.937 kb on - strand, within ECD_00060at 63.082 kb on + strand, within ECD_00060at 63.082 kb on + strand, within ECD_00060at 63.083 kb on - strand, within ECD_00060at 63.083 kb on - strand, within ECD_00060at 63.083 kb on - strand, within ECD_00060at 63.083 kb on - strand, within ECD_00060at 63.083 kb on - strand, within ECD_00060at 63.083 kb on - strand, within ECD_00060at 63.085 kb on + strand, within ECD_00060at 63.085 kb on + strand, within ECD_00060at 63.086 kb on - strandat 63.086 kb on - strandat 63.086 kb on - strandat 63.086 kb on - strandat 63.135 kb on + strandat 63.233 kb on - strandat 63.465 kb on + strand, within ECD_00061at 63.474 kb on + strand, within ECD_00061at 63.531 kb on + strand, within ECD_00061at 63.543 kb on + strand, within ECD_00061at 63.543 kb on + strand, within ECD_00061at 63.543 kb on + strand, within ECD_00061at 63.543 kb on + strand, within ECD_00061at 63.543 kb on + strand, within ECD_00061at 63.543 kb on + strand, within ECD_00061at 63.543 kb on + strand, within ECD_00061at 63.543 kb on + strand, within ECD_00061at 63.544 kb on - strand, within ECD_00061at 63.544 kb on - strand, within ECD_00061at 63.544 kb on - strand, within ECD_00061at 63.544 kb on - strand, within ECD_00061at 63.544 kb on - strand, within ECD_00061at 63.544 kb on - strand, within ECD_00061at 63.544 kb on - strand, within ECD_00061at 63.544 kb on - strand, within ECD_00061at 63.544 kb on - strand, within ECD_00061at 63.544 kb on - strand, within ECD_00061at 63.544 kb on - strand, within ECD_00061at 63.548 kb on - strand, within ECD_00061at 63.611 kb on + strand, within ECD_00061at 63.611 kb on + strand, within ECD_00061at 63.611 kb on + strand, within ECD_00061at 63.633 kb on + strand, within ECD_00061at 63.633 kb on + strand, within ECD_00061at 63.634 kb on - strand, within ECD_00061at 63.742 kb on - strand, within ECD_00061at 63.834 kb on + strand, within ECD_00061at 63.834 kb on + strand, within ECD_00061at 63.835 kb on - strand, within ECD_00061at 63.835 kb on - strand, within ECD_00061at 63.835 kb on - strand, within ECD_00061at 64.112 kb on + strand, within ECD_00061at 64.113 kb on - strand, within ECD_00061at 64.113 kb on - strand, within ECD_00061at 64.117 kb on - strand, within ECD_00061at 64.130 kb on + strand, within ECD_00061at 64.130 kb on + strand, within ECD_00061at 64.130 kb on + strand, within ECD_00061at 64.130 kb on + strand, within ECD_00061at 64.130 kb on + strand, within ECD_00061at 64.131 kb on - strand, within ECD_00061at 64.131 kb on - strand, within ECD_00061at 64.131 kb on - strand, within ECD_00061at 64.131 kb on - strand, within ECD_00061at 64.131 kb on - strand, within ECD_00061at 64.132 kb on + strand, within ECD_00061at 64.132 kb on + strand, within ECD_00061at 64.132 kb on + strand, within ECD_00061at 64.132 kb on + strand, within ECD_00061at 64.132 kb on + strand, within ECD_00061at 64.133 kb on - strand, within ECD_00061at 64.133 kb on - strand, within ECD_00061at 64.142 kb on + strand, within ECD_00061at 64.143 kb on - strand, within ECD_00061at 64.143 kb on - strand, within ECD_00061at 64.147 kb on - strand, within ECD_00061at 64.147 kb on - strand, within ECD_00061

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
remove
61,511 + +0.5
61,511 + -0.0
61,511 + -0.5
61,513 + -0.0
61,513 + -0.4
61,525 + +0.0
61,557 + -0.6
61,557 + +0.0
61,557 + -0.2
61,557 + +0.6
61,558 - -0.5
61,559 + +0.7
61,559 + -0.7
61,567 - +0.3
61,633 + +0.4
61,642 + ECD_00059 0.10 +0.5
61,642 + ECD_00059 0.10 +0.2
61,643 - ECD_00059 0.10 -0.6
61,677 - ECD_00059 0.14 -0.3
61,753 + ECD_00059 0.24 -0.0
61,787 + ECD_00059 0.28 +0.3
61,949 + ECD_00059 0.48 +0.0
62,022 + ECD_00059 0.57 -0.1
62,022 + ECD_00059 0.57 -0.2
62,180 + ECD_00059 0.76 -0.3
62,181 - ECD_00059 0.76 -0.2
62,237 + ECD_00059 0.83 +0.7
62,237 + ECD_00059 0.83 -1.3
62,238 - ECD_00059 0.83 +0.6
62,265 - ECD_00059 0.86 +1.0
62,340 + -1.5
62,340 + +0.1
62,341 - +0.2
62,369 + -0.0
62,388 - -0.5
62,513 - +1.4
62,521 + -0.5
62,521 + -0.6
62,521 + +0.2
62,522 - -0.3
62,525 - +1.1
62,568 - ECD_00060 0.12 +0.3
62,611 - ECD_00060 0.18 -0.2
62,650 + ECD_00060 0.24 -0.1
62,650 + ECD_00060 0.24 -0.2
62,651 - ECD_00060 0.24 -0.3
62,722 - ECD_00060 0.35 -0.4
62,736 + ECD_00060 0.37 -0.0
62,736 + ECD_00060 0.37 +0.4
62,937 - ECD_00060 0.67 +0.2
63,082 + ECD_00060 0.89 -0.9
63,082 + ECD_00060 0.89 -0.3
63,083 - ECD_00060 0.90 -0.3
63,083 - ECD_00060 0.90 -1.7
63,083 - ECD_00060 0.90 -0.9
63,083 - ECD_00060 0.90 -0.6
63,083 - ECD_00060 0.90 -0.9
63,083 - ECD_00060 0.90 -1.1
63,085 + ECD_00060 0.90 -1.1
63,085 + ECD_00060 0.90 -0.6
63,086 - -0.3
63,086 - -0.6
63,086 - -0.4
63,086 - +0.7
63,135 + -1.5
63,233 - -2.2
63,465 + ECD_00061 0.10 -4.3
63,474 + ECD_00061 0.11 +2.8
63,531 + ECD_00061 0.13 -1.7
63,543 + ECD_00061 0.13 -2.6
63,543 + ECD_00061 0.13 -3.1
63,543 + ECD_00061 0.13 -3.0
63,543 + ECD_00061 0.13 -3.3
63,543 + ECD_00061 0.13 -3.5
63,543 + ECD_00061 0.13 -3.2
63,543 + ECD_00061 0.13 -1.1
63,543 + ECD_00061 0.13 -4.0
63,544 - ECD_00061 0.13 -3.4
63,544 - ECD_00061 0.13 -2.3
63,544 - ECD_00061 0.13 -3.0
63,544 - ECD_00061 0.13 -0.8
63,544 - ECD_00061 0.13 -2.6
63,544 - ECD_00061 0.13 -3.5
63,544 - ECD_00061 0.13 -2.5
63,544 - ECD_00061 0.13 -2.3
63,544 - ECD_00061 0.13 -3.2
63,544 - ECD_00061 0.13 -2.2
63,544 - ECD_00061 0.13 -0.6
63,548 - ECD_00061 0.13 -3.0
63,611 + ECD_00061 0.15 -1.8
63,611 + ECD_00061 0.15 -5.2
63,611 + ECD_00061 0.15 -4.9
63,633 + ECD_00061 0.16 -2.7
63,633 + ECD_00061 0.16 -2.1
63,634 - ECD_00061 0.16 -2.3
63,742 - ECD_00061 0.20 -1.3
63,834 + ECD_00061 0.23 -3.7
63,834 + ECD_00061 0.23 -1.9
63,835 - ECD_00061 0.23 -2.5
63,835 - ECD_00061 0.23 -2.5
63,835 - ECD_00061 0.23 -2.8
64,112 + ECD_00061 0.33 -1.1
64,113 - ECD_00061 0.33 -2.3
64,113 - ECD_00061 0.33 -4.3
64,117 - ECD_00061 0.33 -3.0
64,130 + ECD_00061 0.33 -4.5
64,130 + ECD_00061 0.33 -3.8
64,130 + ECD_00061 0.33 -1.7
64,130 + ECD_00061 0.33 -2.9
64,130 + ECD_00061 0.33 -2.1
64,131 - ECD_00061 0.33 -3.2
64,131 - ECD_00061 0.33 -3.2
64,131 - ECD_00061 0.33 -2.6
64,131 - ECD_00061 0.33 -2.7
64,131 - ECD_00061 0.33 -2.2
64,132 + ECD_00061 0.33 -2.7
64,132 + ECD_00061 0.33 -3.7
64,132 + ECD_00061 0.33 +2.4
64,132 + ECD_00061 0.33 -3.9
64,132 + ECD_00061 0.33 -3.3
64,133 - ECD_00061 0.33 -1.3
64,133 - ECD_00061 0.33 -1.2
64,142 + ECD_00061 0.34 -1.4
64,143 - ECD_00061 0.34 -3.0
64,143 - ECD_00061 0.34 -2.9
64,147 - ECD_00061 0.34 -3.4
64,147 - ECD_00061 0.34 -2.0

Or see this region's nucleotide sequence