Experiment: Control_TnH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03362 and ECD_03363 are separated by 362 nucleotides ECD_03363 and ECD_03364 are separated by 367 nucleotides
ECD_03362: ECD_03362 - anaerobic multidrug efflux transporter, ArcA-regulated, at 3,521,601 to 3,524,714
_03362
ECD_03363: ECD_03363 - transcriptional activator of gadA and gadBC; repressor of gadX, at 3,525,077 to 3,525,805
_03363
ECD_03364: ECD_03364 - acid resistance regulon transcriptional activator; autoactivator, at 3,526,173 to 3,526,997
_03364
Position (kb)
3525
3526 Strain fitness (log2 ratio)
-2
-1
0
1 at 3524.180 kb on - strand, within ECD_03362 at 3524.185 kb on - strand, within ECD_03362 at 3524.268 kb on + strand, within ECD_03362 at 3524.269 kb on - strand, within ECD_03362 at 3524.357 kb on - strand, within ECD_03362 at 3524.357 kb on - strand, within ECD_03362 at 3524.360 kb on + strand, within ECD_03362 at 3524.360 kb on + strand, within ECD_03362 at 3524.360 kb on + strand, within ECD_03362 at 3524.361 kb on - strand, within ECD_03362 at 3524.361 kb on - strand, within ECD_03362 at 3524.370 kb on + strand, within ECD_03362 at 3524.653 kb on - strand at 3524.677 kb on + strand at 3524.678 kb on - strand at 3524.702 kb on + strand at 3524.702 kb on + strand at 3524.719 kb on + strand at 3524.729 kb on + strand at 3524.729 kb on + strand at 3524.729 kb on + strand at 3524.808 kb on - strand at 3524.817 kb on - strand at 3524.817 kb on - strand at 3524.817 kb on - strand at 3524.820 kb on - strand at 3524.820 kb on - strand at 3525.129 kb on + strand at 3525.130 kb on - strand at 3525.130 kb on - strand at 3525.130 kb on - strand at 3525.132 kb on + strand at 3525.133 kb on - strand at 3525.149 kb on + strand at 3525.156 kb on + strand, within ECD_03363 at 3525.157 kb on - strand, within ECD_03363 at 3525.163 kb on + strand, within ECD_03363 at 3525.164 kb on - strand, within ECD_03363 at 3525.164 kb on - strand, within ECD_03363 at 3525.170 kb on - strand, within ECD_03363 at 3525.170 kb on - strand, within ECD_03363 at 3525.171 kb on + strand, within ECD_03363 at 3525.191 kb on - strand, within ECD_03363 at 3525.191 kb on - strand, within ECD_03363 at 3525.193 kb on + strand, within ECD_03363 at 3525.193 kb on + strand, within ECD_03363 at 3525.194 kb on - strand, within ECD_03363 at 3525.319 kb on - strand, within ECD_03363 at 3525.371 kb on - strand, within ECD_03363 at 3525.374 kb on - strand, within ECD_03363 at 3525.374 kb on - strand, within ECD_03363 at 3525.585 kb on - strand, within ECD_03363 at 3525.835 kb on - strand at 3525.850 kb on + strand at 3526.182 kb on + strand at 3526.231 kb on + strand at 3526.232 kb on + strand at 3526.283 kb on - strand, within ECD_03364 at 3526.322 kb on - strand, within ECD_03364 at 3526.441 kb on + strand, within ECD_03364 at 3526.442 kb on - strand, within ECD_03364 at 3526.536 kb on - strand, within ECD_03364 at 3526.539 kb on - strand, within ECD_03364 at 3526.605 kb on - strand, within ECD_03364
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnH remove 3,524,180 - ECD_03362 0.83 -0.2 3,524,185 - ECD_03362 0.83 +0.4 3,524,268 + ECD_03362 0.86 -0.4 3,524,269 - ECD_03362 0.86 -0.8 3,524,357 - ECD_03362 0.89 -0.5 3,524,357 - ECD_03362 0.89 -2.3 3,524,360 + ECD_03362 0.89 +0.5 3,524,360 + ECD_03362 0.89 -0.1 3,524,360 + ECD_03362 0.89 -1.3 3,524,361 - ECD_03362 0.89 -0.2 3,524,361 - ECD_03362 0.89 -0.7 3,524,370 + ECD_03362 0.89 -0.4 3,524,653 - +0.3 3,524,677 + +0.8 3,524,678 - -0.1 3,524,702 + -0.1 3,524,702 + -2.6 3,524,719 + -0.2 3,524,729 + +0.6 3,524,729 + +0.0 3,524,729 + +0.3 3,524,808 - +0.3 3,524,817 - +0.0 3,524,817 - +0.3 3,524,817 - +0.5 3,524,820 - -0.9 3,524,820 - +0.9 3,525,129 + -0.0 3,525,130 - +1.5 3,525,130 - -0.1 3,525,130 - +0.2 3,525,132 + +0.7 3,525,133 - +0.2 3,525,149 + -0.8 3,525,156 + ECD_03363 0.11 +0.3 3,525,157 - ECD_03363 0.11 -0.0 3,525,163 + ECD_03363 0.12 +1.1 3,525,164 - ECD_03363 0.12 -0.1 3,525,164 - ECD_03363 0.12 +0.9 3,525,170 - ECD_03363 0.13 +0.4 3,525,170 - ECD_03363 0.13 +0.2 3,525,171 + ECD_03363 0.13 -0.1 3,525,191 - ECD_03363 0.16 +0.1 3,525,191 - ECD_03363 0.16 -0.1 3,525,193 + ECD_03363 0.16 +0.8 3,525,193 + ECD_03363 0.16 -0.0 3,525,194 - ECD_03363 0.16 +1.0 3,525,319 - ECD_03363 0.33 +0.7 3,525,371 - ECD_03363 0.40 +0.3 3,525,374 - ECD_03363 0.41 +0.1 3,525,374 - ECD_03363 0.41 +0.6 3,525,585 - ECD_03363 0.70 +0.5 3,525,835 - +0.2 3,525,850 + -0.1 3,526,182 + -0.0 3,526,231 + +0.5 3,526,232 + +0.0 3,526,283 - ECD_03364 0.13 +0.3 3,526,322 - ECD_03364 0.18 -0.2 3,526,441 + ECD_03364 0.32 +0.4 3,526,442 - ECD_03364 0.33 +0.2 3,526,536 - ECD_03364 0.44 +0.2 3,526,539 - ECD_03364 0.44 +0.2 3,526,605 - ECD_03364 0.52 -0.2
Or see this region's nucleotide sequence