Strain Fitness in Escherichia coli BL21 around ECD_03337

Experiment: Control_TnH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03336 and ECD_03337 overlap by 4 nucleotidesECD_03337 and ECD_03338 are separated by 365 nucleotides ECD_03336: ECD_03336 - ribosome-associated ATPase: ATP-binding protein/ATP-binding membrane protein, at 3,489,187 to 3,491,922 _03336 ECD_03337: ECD_03337 - putative membrane fusion protein (MFP) of efflux pump, at 3,491,919 to 3,492,986 _03337 ECD_03338: ECD_03338 - DUF4049 family protein, at 3,493,352 to 3,494,974 _03338 Position (kb) 3491 3492 3493Strain fitness (log2 ratio) -1 0 1at 3490.981 kb on - strand, within ECD_03336at 3491.120 kb on + strand, within ECD_03336at 3491.120 kb on + strand, within ECD_03336at 3491.121 kb on - strand, within ECD_03336at 3491.179 kb on - strand, within ECD_03336at 3491.218 kb on + strand, within ECD_03336at 3491.218 kb on + strand, within ECD_03336at 3491.298 kb on + strand, within ECD_03336at 3491.299 kb on - strand, within ECD_03336at 3491.300 kb on + strand, within ECD_03336at 3491.300 kb on + strand, within ECD_03336at 3491.300 kb on + strand, within ECD_03336at 3491.300 kb on + strand, within ECD_03336at 3491.301 kb on - strand, within ECD_03336at 3491.346 kb on + strand, within ECD_03336at 3491.698 kb on - strandat 3491.833 kb on - strandat 3492.031 kb on - strand, within ECD_03337at 3492.150 kb on - strand, within ECD_03337at 3492.239 kb on + strand, within ECD_03337at 3492.240 kb on - strand, within ECD_03337at 3492.241 kb on + strand, within ECD_03337at 3492.241 kb on + strand, within ECD_03337at 3492.241 kb on + strand, within ECD_03337at 3492.242 kb on - strand, within ECD_03337at 3492.263 kb on + strand, within ECD_03337at 3492.426 kb on - strand, within ECD_03337at 3492.426 kb on - strand, within ECD_03337at 3492.445 kb on - strand, within ECD_03337at 3492.456 kb on - strand, within ECD_03337at 3492.816 kb on - strand, within ECD_03337at 3492.974 kb on + strandat 3492.975 kb on - strandat 3492.975 kb on - strandat 3493.009 kb on + strandat 3493.148 kb on + strandat 3493.148 kb on + strandat 3493.149 kb on - strandat 3493.149 kb on - strandat 3493.149 kb on - strandat 3493.149 kb on - strandat 3493.179 kb on - strandat 3493.194 kb on - strandat 3493.194 kb on - strandat 3493.200 kb on - strandat 3493.212 kb on + strandat 3493.213 kb on - strandat 3493.250 kb on - strandat 3493.302 kb on - strandat 3493.330 kb on + strandat 3493.331 kb on - strandat 3493.334 kb on - strandat 3493.362 kb on - strandat 3493.390 kb on + strandat 3493.391 kb on - strandat 3493.440 kb on - strandat 3493.474 kb on + strandat 3493.474 kb on + strandat 3493.475 kb on - strandat 3493.475 kb on - strandat 3493.475 kb on - strandat 3493.504 kb on + strandat 3493.593 kb on - strand, within ECD_03338at 3493.595 kb on - strand, within ECD_03338at 3493.598 kb on + strand, within ECD_03338at 3493.641 kb on + strand, within ECD_03338at 3493.814 kb on - strand, within ECD_03338

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnH
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3,490,981 - ECD_03336 0.66 +0.4
3,491,120 + ECD_03336 0.71 -1.1
3,491,120 + ECD_03336 0.71 +1.4
3,491,121 - ECD_03336 0.71 +0.3
3,491,179 - ECD_03336 0.73 -0.6
3,491,218 + ECD_03336 0.74 -0.5
3,491,218 + ECD_03336 0.74 +0.1
3,491,298 + ECD_03336 0.77 +0.0
3,491,299 - ECD_03336 0.77 -0.1
3,491,300 + ECD_03336 0.77 +0.5
3,491,300 + ECD_03336 0.77 -0.1
3,491,300 + ECD_03336 0.77 +0.6
3,491,300 + ECD_03336 0.77 +1.2
3,491,301 - ECD_03336 0.77 +0.3
3,491,346 + ECD_03336 0.79 -0.4
3,491,698 - +0.2
3,491,833 - +0.9
3,492,031 - ECD_03337 0.10 +0.4
3,492,150 - ECD_03337 0.22 +0.2
3,492,239 + ECD_03337 0.30 +0.3
3,492,240 - ECD_03337 0.30 -0.3
3,492,241 + ECD_03337 0.30 -0.3
3,492,241 + ECD_03337 0.30 +0.0
3,492,241 + ECD_03337 0.30 +0.2
3,492,242 - ECD_03337 0.30 -1.1
3,492,263 + ECD_03337 0.32 -1.6
3,492,426 - ECD_03337 0.47 +0.2
3,492,426 - ECD_03337 0.47 -0.7
3,492,445 - ECD_03337 0.49 +1.4
3,492,456 - ECD_03337 0.50 -0.5
3,492,816 - ECD_03337 0.84 -0.0
3,492,974 + +0.4
3,492,975 - +0.9
3,492,975 - +0.5
3,493,009 + -1.4
3,493,148 + -0.2
3,493,148 + +0.2
3,493,149 - -0.8
3,493,149 - -0.1
3,493,149 - -1.2
3,493,149 - -1.5
3,493,179 - +0.7
3,493,194 - -0.4
3,493,194 - -0.2
3,493,200 - +0.7
3,493,212 + -0.7
3,493,213 - +1.2
3,493,250 - -0.3
3,493,302 - -0.0
3,493,330 + +0.1
3,493,331 - -0.9
3,493,334 - +0.4
3,493,362 - +1.2
3,493,390 + -0.9
3,493,391 - -0.4
3,493,440 - +0.0
3,493,474 + -1.5
3,493,474 + +1.2
3,493,475 - -0.1
3,493,475 - -0.3
3,493,475 - +0.4
3,493,504 + -0.1
3,493,593 - ECD_03338 0.15 +0.5
3,493,595 - ECD_03338 0.15 +0.9
3,493,598 + ECD_03338 0.15 +0.5
3,493,641 + ECD_03338 0.18 -0.4
3,493,814 - ECD_03338 0.28 +0.9

Or see this region's nucleotide sequence