Strain Fitness in Escherichia coli BL21 around ECD_03104

Experiment: Control_TnH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03103 and ECD_03104 are separated by 127 nucleotidesECD_03104 and ECD_03105 are separated by 429 nucleotides ECD_03103: ECD_03103 - transcriptional regulator for aaeXAB operon, at 3,250,682 to 3,251,611 _03103 ECD_03104: ECD_03104 - putative peptidase, at 3,251,739 to 3,253,184 _03104 ECD_03105: ECD_03105 - DUF3971-AsmA2 domains protein, at 3,253,614 to 3,257,414 _03105 Position (kb) 3251 3252 3253 3254Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3250.758 kb on + strandat 3250.759 kb on - strandat 3250.759 kb on - strandat 3250.759 kb on - strandat 3250.818 kb on + strand, within ECD_03103at 3250.827 kb on + strand, within ECD_03103at 3250.875 kb on - strand, within ECD_03103at 3250.931 kb on + strand, within ECD_03103at 3250.931 kb on + strand, within ECD_03103at 3250.931 kb on + strand, within ECD_03103at 3250.932 kb on - strand, within ECD_03103at 3250.984 kb on + strand, within ECD_03103at 3251.033 kb on + strand, within ECD_03103at 3251.211 kb on + strand, within ECD_03103at 3251.255 kb on + strand, within ECD_03103at 3251.256 kb on - strand, within ECD_03103at 3251.393 kb on + strand, within ECD_03103at 3251.393 kb on + strand, within ECD_03103at 3251.394 kb on - strand, within ECD_03103at 3251.490 kb on + strand, within ECD_03103at 3251.491 kb on - strand, within ECD_03103at 3251.491 kb on - strand, within ECD_03103at 3251.491 kb on - strand, within ECD_03103at 3251.491 kb on - strand, within ECD_03103at 3251.491 kb on - strand, within ECD_03103at 3251.493 kb on - strand, within ECD_03103at 3251.493 kb on - strand, within ECD_03103at 3251.507 kb on - strand, within ECD_03103at 3251.523 kb on + strandat 3251.523 kb on + strandat 3251.523 kb on + strandat 3251.524 kb on - strandat 3251.569 kb on + strandat 3251.609 kb on + strandat 3251.609 kb on + strandat 3251.609 kb on + strandat 3251.610 kb on - strandat 3251.616 kb on + strandat 3251.621 kb on + strandat 3251.621 kb on + strandat 3251.622 kb on - strandat 3251.715 kb on - strandat 3251.954 kb on - strand, within ECD_03104at 3252.025 kb on + strand, within ECD_03104at 3252.025 kb on + strand, within ECD_03104at 3252.025 kb on + strand, within ECD_03104at 3252.025 kb on + strand, within ECD_03104at 3252.025 kb on + strand, within ECD_03104at 3252.026 kb on - strand, within ECD_03104at 3252.026 kb on - strand, within ECD_03104at 3252.026 kb on - strand, within ECD_03104at 3252.026 kb on - strand, within ECD_03104at 3252.026 kb on - strand, within ECD_03104at 3252.026 kb on - strand, within ECD_03104at 3252.029 kb on + strand, within ECD_03104at 3252.030 kb on - strand, within ECD_03104at 3252.034 kb on + strand, within ECD_03104at 3252.035 kb on - strand, within ECD_03104at 3252.084 kb on - strand, within ECD_03104at 3252.085 kb on + strand, within ECD_03104at 3252.086 kb on - strand, within ECD_03104at 3252.086 kb on - strand, within ECD_03104at 3252.086 kb on - strand, within ECD_03104at 3252.086 kb on - strand, within ECD_03104at 3252.086 kb on - strand, within ECD_03104at 3252.121 kb on + strand, within ECD_03104at 3252.122 kb on - strand, within ECD_03104at 3252.191 kb on - strand, within ECD_03104at 3252.240 kb on - strand, within ECD_03104at 3252.303 kb on - strand, within ECD_03104at 3252.303 kb on - strand, within ECD_03104at 3252.303 kb on - strand, within ECD_03104at 3252.341 kb on + strand, within ECD_03104at 3252.346 kb on - strand, within ECD_03104at 3252.433 kb on - strand, within ECD_03104at 3252.556 kb on + strand, within ECD_03104at 3252.697 kb on + strand, within ECD_03104at 3252.697 kb on + strand, within ECD_03104at 3252.729 kb on + strand, within ECD_03104at 3252.759 kb on - strand, within ECD_03104at 3252.817 kb on - strand, within ECD_03104at 3252.825 kb on - strand, within ECD_03104at 3252.827 kb on - strand, within ECD_03104at 3252.827 kb on - strand, within ECD_03104at 3252.827 kb on - strand, within ECD_03104at 3252.827 kb on - strand, within ECD_03104at 3252.827 kb on - strand, within ECD_03104at 3252.827 kb on - strand, within ECD_03104at 3252.827 kb on - strand, within ECD_03104at 3252.827 kb on - strand, within ECD_03104at 3252.878 kb on + strand, within ECD_03104at 3252.879 kb on - strand, within ECD_03104at 3253.006 kb on + strand, within ECD_03104at 3253.006 kb on + strand, within ECD_03104at 3253.007 kb on - strand, within ECD_03104at 3253.007 kb on - strand, within ECD_03104at 3253.020 kb on - strand, within ECD_03104at 3253.054 kb on + strandat 3253.055 kb on - strandat 3253.167 kb on + strandat 3253.201 kb on + strandat 3253.202 kb on - strandat 3253.205 kb on + strandat 3253.213 kb on + strandat 3253.214 kb on - strandat 3253.214 kb on - strandat 3253.269 kb on + strandat 3253.355 kb on + strandat 3253.361 kb on + strandat 3253.361 kb on + strandat 3253.361 kb on + strandat 3253.361 kb on + strandat 3253.375 kb on - strandat 3253.383 kb on + strandat 3253.384 kb on - strandat 3253.537 kb on + strandat 3253.543 kb on + strandat 3253.581 kb on - strandat 3253.597 kb on + strandat 3253.733 kb on + strandat 3253.734 kb on - strandat 3253.920 kb on - strandat 3253.932 kb on - strandat 3253.964 kb on - strandat 3254.006 kb on + strand, within ECD_03105at 3254.023 kb on - strand, within ECD_03105at 3254.023 kb on - strand, within ECD_03105at 3254.096 kb on + strand, within ECD_03105at 3254.145 kb on - strand, within ECD_03105

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnH
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3,250,758 + +0.5
3,250,759 - -0.1
3,250,759 - -0.1
3,250,759 - +0.7
3,250,818 + ECD_03103 0.15 +0.6
3,250,827 + ECD_03103 0.16 +2.8
3,250,875 - ECD_03103 0.21 +1.0
3,250,931 + ECD_03103 0.27 +0.1
3,250,931 + ECD_03103 0.27 -0.4
3,250,931 + ECD_03103 0.27 -0.1
3,250,932 - ECD_03103 0.27 +0.2
3,250,984 + ECD_03103 0.32 -0.2
3,251,033 + ECD_03103 0.38 +0.2
3,251,211 + ECD_03103 0.57 -0.3
3,251,255 + ECD_03103 0.62 +0.0
3,251,256 - ECD_03103 0.62 +0.8
3,251,393 + ECD_03103 0.76 -0.1
3,251,393 + ECD_03103 0.76 -1.1
3,251,394 - ECD_03103 0.77 +0.0
3,251,490 + ECD_03103 0.87 +0.8
3,251,491 - ECD_03103 0.87 +0.3
3,251,491 - ECD_03103 0.87 -0.1
3,251,491 - ECD_03103 0.87 +0.5
3,251,491 - ECD_03103 0.87 -1.6
3,251,491 - ECD_03103 0.87 -0.1
3,251,493 - ECD_03103 0.87 -0.3
3,251,493 - ECD_03103 0.87 -0.2
3,251,507 - ECD_03103 0.89 +0.4
3,251,523 + -0.7
3,251,523 + -0.7
3,251,523 + -0.6
3,251,524 - -0.4
3,251,569 + +0.8
3,251,609 + -0.6
3,251,609 + -1.8
3,251,609 + -2.1
3,251,610 - -0.0
3,251,616 + +0.1
3,251,621 + -0.1
3,251,621 + -0.3
3,251,622 - +0.1
3,251,715 - -0.6
3,251,954 - ECD_03104 0.15 +0.5
3,252,025 + ECD_03104 0.20 -0.6
3,252,025 + ECD_03104 0.20 +0.8
3,252,025 + ECD_03104 0.20 -0.2
3,252,025 + ECD_03104 0.20 -0.9
3,252,025 + ECD_03104 0.20 -0.2
3,252,026 - ECD_03104 0.20 -0.6
3,252,026 - ECD_03104 0.20 -1.9
3,252,026 - ECD_03104 0.20 -0.6
3,252,026 - ECD_03104 0.20 +0.6
3,252,026 - ECD_03104 0.20 -0.5
3,252,026 - ECD_03104 0.20 +0.3
3,252,029 + ECD_03104 0.20 -1.1
3,252,030 - ECD_03104 0.20 +0.7
3,252,034 + ECD_03104 0.20 -0.6
3,252,035 - ECD_03104 0.20 -0.0
3,252,084 - ECD_03104 0.24 -0.5
3,252,085 + ECD_03104 0.24 -0.1
3,252,086 - ECD_03104 0.24 +1.0
3,252,086 - ECD_03104 0.24 +0.7
3,252,086 - ECD_03104 0.24 +0.2
3,252,086 - ECD_03104 0.24 -0.0
3,252,086 - ECD_03104 0.24 +0.5
3,252,121 + ECD_03104 0.26 +0.6
3,252,122 - ECD_03104 0.26 +0.1
3,252,191 - ECD_03104 0.31 +0.2
3,252,240 - ECD_03104 0.35 +0.3
3,252,303 - ECD_03104 0.39 +1.0
3,252,303 - ECD_03104 0.39 -0.6
3,252,303 - ECD_03104 0.39 +1.1
3,252,341 + ECD_03104 0.42 +1.0
3,252,346 - ECD_03104 0.42 -0.9
3,252,433 - ECD_03104 0.48 +1.4
3,252,556 + ECD_03104 0.57 -0.9
3,252,697 + ECD_03104 0.66 -0.6
3,252,697 + ECD_03104 0.66 +0.4
3,252,729 + ECD_03104 0.68 -0.5
3,252,759 - ECD_03104 0.71 +1.0
3,252,817 - ECD_03104 0.75 +0.9
3,252,825 - ECD_03104 0.75 +1.8
3,252,827 - ECD_03104 0.75 +0.1
3,252,827 - ECD_03104 0.75 +0.0
3,252,827 - ECD_03104 0.75 -0.4
3,252,827 - ECD_03104 0.75 -0.2
3,252,827 - ECD_03104 0.75 -0.2
3,252,827 - ECD_03104 0.75 -0.8
3,252,827 - ECD_03104 0.75 -0.1
3,252,827 - ECD_03104 0.75 +0.1
3,252,878 + ECD_03104 0.79 -0.1
3,252,879 - ECD_03104 0.79 +0.8
3,253,006 + ECD_03104 0.88 -1.1
3,253,006 + ECD_03104 0.88 +0.1
3,253,007 - ECD_03104 0.88 -0.0
3,253,007 - ECD_03104 0.88 +0.5
3,253,020 - ECD_03104 0.89 +0.8
3,253,054 + +0.5
3,253,055 - +0.1
3,253,167 + +0.2
3,253,201 + -0.9
3,253,202 - +0.5
3,253,205 + +0.3
3,253,213 + -0.3
3,253,214 - +0.2
3,253,214 - -0.5
3,253,269 + +0.5
3,253,355 + +0.5
3,253,361 + -0.3
3,253,361 + -0.5
3,253,361 + -0.1
3,253,361 + -0.1
3,253,375 - +0.1
3,253,383 + -0.9
3,253,384 - -0.1
3,253,537 + +0.5
3,253,543 + +0.5
3,253,581 - +0.0
3,253,597 + -0.3
3,253,733 + +0.5
3,253,734 - +0.5
3,253,920 - +0.6
3,253,932 - -0.1
3,253,964 - +1.0
3,254,006 + ECD_03105 0.10 +0.0
3,254,023 - ECD_03105 0.11 +0.6
3,254,023 - ECD_03105 0.11 +0.6
3,254,096 + ECD_03105 0.13 -0.4
3,254,145 - ECD_03105 0.14 -0.5

Or see this region's nucleotide sequence