Strain Fitness in Escherichia coli BL21 around ECD_02493

Experiment: Control_TnH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02491 and ECD_02492 are separated by 149 nucleotidesECD_02492 and ECD_02493 overlap by 11 nucleotidesECD_02493 and ECD_02494 are separated by 15 nucleotidesECD_02494 and ECD_02495 are separated by 75 nucleotidesECD_02495 and ECD_02496 are separated by 41 nucleotides ECD_02491: ECD_02491 - lipoprotein, at 2,607,874 to 2,608,239 _02491 ECD_02492: ECD_02492 - putative periplasmic inhibitor of YfiN activity, at 2,608,389 to 2,608,907 _02492 ECD_02493: ECD_02493 - putative membrane-anchored diguanylate cyclase, at 2,608,897 to 2,610,123 _02493 ECD_02494: ECD_02494 - OM lipoprotein putative positive effector of YfiN activity, at 2,610,139 to 2,610,621 _02494 ECD_02495: ECD_02495 - 50S ribosomal subunit protein L19, at 2,610,697 to 2,611,044 _02495 ECD_02496: ECD_02496 - tRNA m(1)G37 methyltransferase, SAM-dependent, at 2,611,086 to 2,611,853 _02496 Position (kb) 2608 2609 2610 2611Strain fitness (log2 ratio) -2 -1 0 1 2at 2607.937 kb on + strand, within ECD_02491at 2607.937 kb on + strand, within ECD_02491at 2607.938 kb on - strand, within ECD_02491at 2607.939 kb on + strand, within ECD_02491at 2607.939 kb on + strand, within ECD_02491at 2607.939 kb on + strand, within ECD_02491at 2607.940 kb on - strand, within ECD_02491at 2607.940 kb on - strand, within ECD_02491at 2607.940 kb on - strand, within ECD_02491at 2607.974 kb on - strand, within ECD_02491at 2607.974 kb on - strand, within ECD_02491at 2607.974 kb on - strand, within ECD_02491at 2607.974 kb on - strand, within ECD_02491at 2608.013 kb on + strand, within ECD_02491at 2608.013 kb on + strand, within ECD_02491at 2608.059 kb on - strand, within ECD_02491at 2608.059 kb on - strand, within ECD_02491at 2608.059 kb on - strand, within ECD_02491at 2608.059 kb on - strand, within ECD_02491at 2608.060 kb on + strand, within ECD_02491at 2608.061 kb on - strand, within ECD_02491at 2608.061 kb on - strand, within ECD_02491at 2608.061 kb on - strand, within ECD_02491at 2608.114 kb on + strand, within ECD_02491at 2608.115 kb on - strand, within ECD_02491at 2608.191 kb on - strand, within ECD_02491at 2608.330 kb on + strandat 2608.414 kb on + strandat 2608.447 kb on + strand, within ECD_02492at 2608.487 kb on + strand, within ECD_02492at 2608.487 kb on + strand, within ECD_02492at 2608.487 kb on + strand, within ECD_02492at 2608.488 kb on - strand, within ECD_02492at 2608.488 kb on - strand, within ECD_02492at 2608.488 kb on - strand, within ECD_02492at 2608.488 kb on - strand, within ECD_02492at 2608.512 kb on + strand, within ECD_02492at 2608.512 kb on + strand, within ECD_02492at 2608.549 kb on + strand, within ECD_02492at 2608.549 kb on + strand, within ECD_02492at 2608.549 kb on + strand, within ECD_02492at 2608.550 kb on - strand, within ECD_02492at 2608.553 kb on + strand, within ECD_02492at 2608.553 kb on + strand, within ECD_02492at 2608.574 kb on + strand, within ECD_02492at 2608.585 kb on + strand, within ECD_02492at 2608.674 kb on + strand, within ECD_02492at 2608.805 kb on + strand, within ECD_02492at 2608.973 kb on + strandat 2608.973 kb on + strandat 2608.973 kb on + strandat 2608.977 kb on + strandat 2608.983 kb on + strandat 2609.080 kb on + strand, within ECD_02493at 2609.177 kb on + strand, within ECD_02493at 2609.185 kb on - strand, within ECD_02493at 2609.185 kb on - strand, within ECD_02493at 2609.216 kb on - strand, within ECD_02493at 2609.239 kb on - strand, within ECD_02493at 2609.255 kb on + strand, within ECD_02493at 2609.325 kb on - strand, within ECD_02493at 2609.361 kb on + strand, within ECD_02493at 2609.395 kb on - strand, within ECD_02493at 2609.395 kb on - strand, within ECD_02493at 2609.395 kb on - strand, within ECD_02493at 2609.395 kb on - strand, within ECD_02493at 2609.421 kb on + strand, within ECD_02493at 2609.422 kb on - strand, within ECD_02493at 2609.422 kb on - strand, within ECD_02493at 2609.484 kb on - strand, within ECD_02493at 2609.535 kb on + strand, within ECD_02493at 2609.633 kb on + strand, within ECD_02493at 2609.633 kb on + strand, within ECD_02493at 2609.645 kb on + strand, within ECD_02493at 2609.770 kb on + strand, within ECD_02493at 2609.770 kb on + strand, within ECD_02493at 2609.770 kb on + strand, within ECD_02493at 2609.771 kb on - strand, within ECD_02493at 2609.859 kb on + strand, within ECD_02493at 2609.859 kb on + strand, within ECD_02493at 2609.859 kb on + strand, within ECD_02493at 2609.859 kb on + strand, within ECD_02493at 2609.859 kb on + strand, within ECD_02493at 2609.860 kb on - strand, within ECD_02493at 2609.860 kb on - strand, within ECD_02493at 2609.860 kb on - strand, within ECD_02493at 2609.866 kb on + strand, within ECD_02493at 2609.902 kb on + strand, within ECD_02493at 2609.909 kb on + strand, within ECD_02493at 2609.910 kb on - strand, within ECD_02493at 2610.078 kb on + strandat 2610.078 kb on + strandat 2610.078 kb on + strandat 2610.078 kb on + strandat 2610.079 kb on - strandat 2610.079 kb on - strandat 2610.079 kb on - strandat 2610.121 kb on + strandat 2610.122 kb on - strandat 2610.131 kb on - strandat 2610.133 kb on - strandat 2610.179 kb on + strandat 2610.179 kb on + strandat 2610.255 kb on + strand, within ECD_02494at 2610.255 kb on + strand, within ECD_02494at 2610.319 kb on + strand, within ECD_02494at 2610.367 kb on - strand, within ECD_02494at 2610.417 kb on + strand, within ECD_02494at 2610.421 kb on + strand, within ECD_02494at 2610.421 kb on + strand, within ECD_02494at 2610.421 kb on + strand, within ECD_02494at 2610.421 kb on + strand, within ECD_02494at 2610.421 kb on + strand, within ECD_02494at 2610.421 kb on + strand, within ECD_02494at 2610.422 kb on - strand, within ECD_02494at 2610.422 kb on - strand, within ECD_02494at 2610.422 kb on - strand, within ECD_02494at 2610.422 kb on - strand, within ECD_02494at 2610.422 kb on - strand, within ECD_02494at 2610.436 kb on + strand, within ECD_02494at 2610.436 kb on + strand, within ECD_02494at 2610.436 kb on + strand, within ECD_02494at 2610.436 kb on + strand, within ECD_02494at 2610.449 kb on + strand, within ECD_02494at 2610.450 kb on - strand, within ECD_02494at 2610.450 kb on - strand, within ECD_02494at 2610.450 kb on - strand, within ECD_02494at 2610.490 kb on - strand, within ECD_02494at 2610.490 kb on - strand, within ECD_02494at 2610.610 kb on - strandat 2610.610 kb on - strandat 2610.638 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnH
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2,607,937 + ECD_02491 0.17 -0.8
2,607,937 + ECD_02491 0.17 +1.0
2,607,938 - ECD_02491 0.17 +0.5
2,607,939 + ECD_02491 0.18 +0.1
2,607,939 + ECD_02491 0.18 +0.2
2,607,939 + ECD_02491 0.18 -0.2
2,607,940 - ECD_02491 0.18 -0.3
2,607,940 - ECD_02491 0.18 -0.2
2,607,940 - ECD_02491 0.18 +0.3
2,607,974 - ECD_02491 0.27 -0.1
2,607,974 - ECD_02491 0.27 -1.1
2,607,974 - ECD_02491 0.27 -0.7
2,607,974 - ECD_02491 0.27 -0.7
2,608,013 + ECD_02491 0.38 +0.4
2,608,013 + ECD_02491 0.38 +1.6
2,608,059 - ECD_02491 0.51 -0.1
2,608,059 - ECD_02491 0.51 -0.0
2,608,059 - ECD_02491 0.51 -0.1
2,608,059 - ECD_02491 0.51 -1.2
2,608,060 + ECD_02491 0.51 +0.3
2,608,061 - ECD_02491 0.51 +0.1
2,608,061 - ECD_02491 0.51 -0.1
2,608,061 - ECD_02491 0.51 +0.1
2,608,114 + ECD_02491 0.66 -0.3
2,608,115 - ECD_02491 0.66 +0.3
2,608,191 - ECD_02491 0.87 -0.5
2,608,330 + -0.5
2,608,414 + +1.3
2,608,447 + ECD_02492 0.11 +0.9
2,608,487 + ECD_02492 0.19 +0.2
2,608,487 + ECD_02492 0.19 +1.1
2,608,487 + ECD_02492 0.19 +0.2
2,608,488 - ECD_02492 0.19 -2.0
2,608,488 - ECD_02492 0.19 -0.2
2,608,488 - ECD_02492 0.19 +0.1
2,608,488 - ECD_02492 0.19 +1.7
2,608,512 + ECD_02492 0.24 +0.2
2,608,512 + ECD_02492 0.24 +0.2
2,608,549 + ECD_02492 0.31 +0.0
2,608,549 + ECD_02492 0.31 +0.2
2,608,549 + ECD_02492 0.31 -0.7
2,608,550 - ECD_02492 0.31 -0.0
2,608,553 + ECD_02492 0.32 -0.3
2,608,553 + ECD_02492 0.32 -0.8
2,608,574 + ECD_02492 0.36 +0.0
2,608,585 + ECD_02492 0.38 +0.7
2,608,674 + ECD_02492 0.55 -0.2
2,608,805 + ECD_02492 0.80 +0.9
2,608,973 + -0.9
2,608,973 + +0.2
2,608,973 + +0.9
2,608,977 + -0.7
2,608,983 + +1.9
2,609,080 + ECD_02493 0.15 -1.7
2,609,177 + ECD_02493 0.23 +0.3
2,609,185 - ECD_02493 0.23 -0.1
2,609,185 - ECD_02493 0.23 -0.4
2,609,216 - ECD_02493 0.26 +0.9
2,609,239 - ECD_02493 0.28 -0.9
2,609,255 + ECD_02493 0.29 -0.2
2,609,325 - ECD_02493 0.35 +0.6
2,609,361 + ECD_02493 0.38 +0.6
2,609,395 - ECD_02493 0.41 -0.1
2,609,395 - ECD_02493 0.41 -1.1
2,609,395 - ECD_02493 0.41 +0.3
2,609,395 - ECD_02493 0.41 -1.8
2,609,421 + ECD_02493 0.43 +0.2
2,609,422 - ECD_02493 0.43 +0.0
2,609,422 - ECD_02493 0.43 +0.1
2,609,484 - ECD_02493 0.48 +0.3
2,609,535 + ECD_02493 0.52 -0.2
2,609,633 + ECD_02493 0.60 -1.2
2,609,633 + ECD_02493 0.60 -0.7
2,609,645 + ECD_02493 0.61 -0.9
2,609,770 + ECD_02493 0.71 -0.4
2,609,770 + ECD_02493 0.71 -0.1
2,609,770 + ECD_02493 0.71 -0.7
2,609,771 - ECD_02493 0.71 -0.7
2,609,859 + ECD_02493 0.78 +0.3
2,609,859 + ECD_02493 0.78 +0.5
2,609,859 + ECD_02493 0.78 -0.1
2,609,859 + ECD_02493 0.78 -0.4
2,609,859 + ECD_02493 0.78 -2.6
2,609,860 - ECD_02493 0.78 +0.6
2,609,860 - ECD_02493 0.78 +0.2
2,609,860 - ECD_02493 0.78 -0.2
2,609,866 + ECD_02493 0.79 +0.3
2,609,902 + ECD_02493 0.82 -0.0
2,609,909 + ECD_02493 0.82 -1.1
2,609,910 - ECD_02493 0.83 -1.1
2,610,078 + +0.6
2,610,078 + -0.5
2,610,078 + -0.7
2,610,078 + -0.2
2,610,079 - +0.2
2,610,079 - -1.4
2,610,079 - -1.6
2,610,121 + -0.0
2,610,122 - +0.3
2,610,131 - -0.1
2,610,133 - +0.7
2,610,179 + -0.3
2,610,179 + -0.4
2,610,255 + ECD_02494 0.24 -0.4
2,610,255 + ECD_02494 0.24 -0.5
2,610,319 + ECD_02494 0.37 +0.8
2,610,367 - ECD_02494 0.47 -0.0
2,610,417 + ECD_02494 0.58 +0.3
2,610,421 + ECD_02494 0.58 -0.9
2,610,421 + ECD_02494 0.58 +0.3
2,610,421 + ECD_02494 0.58 -0.3
2,610,421 + ECD_02494 0.58 +0.0
2,610,421 + ECD_02494 0.58 -0.2
2,610,421 + ECD_02494 0.58 -0.9
2,610,422 - ECD_02494 0.59 -0.7
2,610,422 - ECD_02494 0.59 +0.6
2,610,422 - ECD_02494 0.59 +0.5
2,610,422 - ECD_02494 0.59 +0.1
2,610,422 - ECD_02494 0.59 -0.7
2,610,436 + ECD_02494 0.61 +0.8
2,610,436 + ECD_02494 0.61 +0.2
2,610,436 + ECD_02494 0.61 +0.3
2,610,436 + ECD_02494 0.61 -1.0
2,610,449 + ECD_02494 0.64 -0.4
2,610,450 - ECD_02494 0.64 +0.3
2,610,450 - ECD_02494 0.64 -1.0
2,610,450 - ECD_02494 0.64 -0.6
2,610,490 - ECD_02494 0.73 -1.0
2,610,490 - ECD_02494 0.73 +0.6
2,610,610 - -0.4
2,610,610 - -1.4
2,610,638 + -0.4

Or see this region's nucleotide sequence