Experiment: Control_TnH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02491 and ECD_02492 are separated by 149 nucleotides ECD_02492 and ECD_02493 overlap by 11 nucleotides ECD_02493 and ECD_02494 are separated by 15 nucleotides ECD_02494 and ECD_02495 are separated by 75 nucleotides ECD_02495 and ECD_02496 are separated by 41 nucleotides
ECD_02491: ECD_02491 - lipoprotein, at 2,607,874 to 2,608,239
_02491
ECD_02492: ECD_02492 - putative periplasmic inhibitor of YfiN activity, at 2,608,389 to 2,608,907
_02492
ECD_02493: ECD_02493 - putative membrane-anchored diguanylate cyclase, at 2,608,897 to 2,610,123
_02493
ECD_02494: ECD_02494 - OM lipoprotein putative positive effector of YfiN activity, at 2,610,139 to 2,610,621
_02494
ECD_02495: ECD_02495 - 50S ribosomal subunit protein L19, at 2,610,697 to 2,611,044
_02495
ECD_02496: ECD_02496 - tRNA m(1)G37 methyltransferase, SAM-dependent, at 2,611,086 to 2,611,853
_02496
Position (kb)
2608
2609
2610
2611 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2607.937 kb on + strand, within ECD_02491 at 2607.937 kb on + strand, within ECD_02491 at 2607.938 kb on - strand, within ECD_02491 at 2607.939 kb on + strand, within ECD_02491 at 2607.939 kb on + strand, within ECD_02491 at 2607.939 kb on + strand, within ECD_02491 at 2607.940 kb on - strand, within ECD_02491 at 2607.940 kb on - strand, within ECD_02491 at 2607.940 kb on - strand, within ECD_02491 at 2607.974 kb on - strand, within ECD_02491 at 2607.974 kb on - strand, within ECD_02491 at 2607.974 kb on - strand, within ECD_02491 at 2607.974 kb on - strand, within ECD_02491 at 2608.013 kb on + strand, within ECD_02491 at 2608.013 kb on + strand, within ECD_02491 at 2608.059 kb on - strand, within ECD_02491 at 2608.059 kb on - strand, within ECD_02491 at 2608.059 kb on - strand, within ECD_02491 at 2608.059 kb on - strand, within ECD_02491 at 2608.060 kb on + strand, within ECD_02491 at 2608.061 kb on - strand, within ECD_02491 at 2608.061 kb on - strand, within ECD_02491 at 2608.061 kb on - strand, within ECD_02491 at 2608.114 kb on + strand, within ECD_02491 at 2608.115 kb on - strand, within ECD_02491 at 2608.191 kb on - strand, within ECD_02491 at 2608.330 kb on + strand at 2608.414 kb on + strand at 2608.447 kb on + strand, within ECD_02492 at 2608.487 kb on + strand, within ECD_02492 at 2608.487 kb on + strand, within ECD_02492 at 2608.487 kb on + strand, within ECD_02492 at 2608.488 kb on - strand, within ECD_02492 at 2608.488 kb on - strand, within ECD_02492 at 2608.488 kb on - strand, within ECD_02492 at 2608.488 kb on - strand, within ECD_02492 at 2608.512 kb on + strand, within ECD_02492 at 2608.512 kb on + strand, within ECD_02492 at 2608.549 kb on + strand, within ECD_02492 at 2608.549 kb on + strand, within ECD_02492 at 2608.549 kb on + strand, within ECD_02492 at 2608.550 kb on - strand, within ECD_02492 at 2608.553 kb on + strand, within ECD_02492 at 2608.553 kb on + strand, within ECD_02492 at 2608.574 kb on + strand, within ECD_02492 at 2608.585 kb on + strand, within ECD_02492 at 2608.674 kb on + strand, within ECD_02492 at 2608.805 kb on + strand, within ECD_02492 at 2608.973 kb on + strand at 2608.973 kb on + strand at 2608.973 kb on + strand at 2608.977 kb on + strand at 2608.983 kb on + strand at 2609.080 kb on + strand, within ECD_02493 at 2609.177 kb on + strand, within ECD_02493 at 2609.185 kb on - strand, within ECD_02493 at 2609.185 kb on - strand, within ECD_02493 at 2609.216 kb on - strand, within ECD_02493 at 2609.239 kb on - strand, within ECD_02493 at 2609.255 kb on + strand, within ECD_02493 at 2609.325 kb on - strand, within ECD_02493 at 2609.361 kb on + strand, within ECD_02493 at 2609.395 kb on - strand, within ECD_02493 at 2609.395 kb on - strand, within ECD_02493 at 2609.395 kb on - strand, within ECD_02493 at 2609.395 kb on - strand, within ECD_02493 at 2609.421 kb on + strand, within ECD_02493 at 2609.422 kb on - strand, within ECD_02493 at 2609.422 kb on - strand, within ECD_02493 at 2609.484 kb on - strand, within ECD_02493 at 2609.535 kb on + strand, within ECD_02493 at 2609.633 kb on + strand, within ECD_02493 at 2609.633 kb on + strand, within ECD_02493 at 2609.645 kb on + strand, within ECD_02493 at 2609.770 kb on + strand, within ECD_02493 at 2609.770 kb on + strand, within ECD_02493 at 2609.770 kb on + strand, within ECD_02493 at 2609.771 kb on - strand, within ECD_02493 at 2609.859 kb on + strand, within ECD_02493 at 2609.859 kb on + strand, within ECD_02493 at 2609.859 kb on + strand, within ECD_02493 at 2609.859 kb on + strand, within ECD_02493 at 2609.859 kb on + strand, within ECD_02493 at 2609.860 kb on - strand, within ECD_02493 at 2609.860 kb on - strand, within ECD_02493 at 2609.860 kb on - strand, within ECD_02493 at 2609.866 kb on + strand, within ECD_02493 at 2609.902 kb on + strand, within ECD_02493 at 2609.909 kb on + strand, within ECD_02493 at 2609.910 kb on - strand, within ECD_02493 at 2610.078 kb on + strand at 2610.078 kb on + strand at 2610.078 kb on + strand at 2610.078 kb on + strand at 2610.079 kb on - strand at 2610.079 kb on - strand at 2610.079 kb on - strand at 2610.121 kb on + strand at 2610.122 kb on - strand at 2610.131 kb on - strand at 2610.133 kb on - strand at 2610.179 kb on + strand at 2610.179 kb on + strand at 2610.255 kb on + strand, within ECD_02494 at 2610.255 kb on + strand, within ECD_02494 at 2610.319 kb on + strand, within ECD_02494 at 2610.367 kb on - strand, within ECD_02494 at 2610.417 kb on + strand, within ECD_02494 at 2610.421 kb on + strand, within ECD_02494 at 2610.421 kb on + strand, within ECD_02494 at 2610.421 kb on + strand, within ECD_02494 at 2610.421 kb on + strand, within ECD_02494 at 2610.421 kb on + strand, within ECD_02494 at 2610.421 kb on + strand, within ECD_02494 at 2610.422 kb on - strand, within ECD_02494 at 2610.422 kb on - strand, within ECD_02494 at 2610.422 kb on - strand, within ECD_02494 at 2610.422 kb on - strand, within ECD_02494 at 2610.422 kb on - strand, within ECD_02494 at 2610.436 kb on + strand, within ECD_02494 at 2610.436 kb on + strand, within ECD_02494 at 2610.436 kb on + strand, within ECD_02494 at 2610.436 kb on + strand, within ECD_02494 at 2610.449 kb on + strand, within ECD_02494 at 2610.450 kb on - strand, within ECD_02494 at 2610.450 kb on - strand, within ECD_02494 at 2610.450 kb on - strand, within ECD_02494 at 2610.490 kb on - strand, within ECD_02494 at 2610.490 kb on - strand, within ECD_02494 at 2610.610 kb on - strand at 2610.610 kb on - strand at 2610.638 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnH remove 2,607,937 + ECD_02491 0.17 -0.8 2,607,937 + ECD_02491 0.17 +1.0 2,607,938 - ECD_02491 0.17 +0.5 2,607,939 + ECD_02491 0.18 +0.1 2,607,939 + ECD_02491 0.18 +0.2 2,607,939 + ECD_02491 0.18 -0.2 2,607,940 - ECD_02491 0.18 -0.3 2,607,940 - ECD_02491 0.18 -0.2 2,607,940 - ECD_02491 0.18 +0.3 2,607,974 - ECD_02491 0.27 -0.1 2,607,974 - ECD_02491 0.27 -1.1 2,607,974 - ECD_02491 0.27 -0.7 2,607,974 - ECD_02491 0.27 -0.7 2,608,013 + ECD_02491 0.38 +0.4 2,608,013 + ECD_02491 0.38 +1.6 2,608,059 - ECD_02491 0.51 -0.1 2,608,059 - ECD_02491 0.51 -0.0 2,608,059 - ECD_02491 0.51 -0.1 2,608,059 - ECD_02491 0.51 -1.2 2,608,060 + ECD_02491 0.51 +0.3 2,608,061 - ECD_02491 0.51 +0.1 2,608,061 - ECD_02491 0.51 -0.1 2,608,061 - ECD_02491 0.51 +0.1 2,608,114 + ECD_02491 0.66 -0.3 2,608,115 - ECD_02491 0.66 +0.3 2,608,191 - ECD_02491 0.87 -0.5 2,608,330 + -0.5 2,608,414 + +1.3 2,608,447 + ECD_02492 0.11 +0.9 2,608,487 + ECD_02492 0.19 +0.2 2,608,487 + ECD_02492 0.19 +1.1 2,608,487 + ECD_02492 0.19 +0.2 2,608,488 - ECD_02492 0.19 -2.0 2,608,488 - ECD_02492 0.19 -0.2 2,608,488 - ECD_02492 0.19 +0.1 2,608,488 - ECD_02492 0.19 +1.7 2,608,512 + ECD_02492 0.24 +0.2 2,608,512 + ECD_02492 0.24 +0.2 2,608,549 + ECD_02492 0.31 +0.0 2,608,549 + ECD_02492 0.31 +0.2 2,608,549 + ECD_02492 0.31 -0.7 2,608,550 - ECD_02492 0.31 -0.0 2,608,553 + ECD_02492 0.32 -0.3 2,608,553 + ECD_02492 0.32 -0.8 2,608,574 + ECD_02492 0.36 +0.0 2,608,585 + ECD_02492 0.38 +0.7 2,608,674 + ECD_02492 0.55 -0.2 2,608,805 + ECD_02492 0.80 +0.9 2,608,973 + -0.9 2,608,973 + +0.2 2,608,973 + +0.9 2,608,977 + -0.7 2,608,983 + +1.9 2,609,080 + ECD_02493 0.15 -1.7 2,609,177 + ECD_02493 0.23 +0.3 2,609,185 - ECD_02493 0.23 -0.1 2,609,185 - ECD_02493 0.23 -0.4 2,609,216 - ECD_02493 0.26 +0.9 2,609,239 - ECD_02493 0.28 -0.9 2,609,255 + ECD_02493 0.29 -0.2 2,609,325 - ECD_02493 0.35 +0.6 2,609,361 + ECD_02493 0.38 +0.6 2,609,395 - ECD_02493 0.41 -0.1 2,609,395 - ECD_02493 0.41 -1.1 2,609,395 - ECD_02493 0.41 +0.3 2,609,395 - ECD_02493 0.41 -1.8 2,609,421 + ECD_02493 0.43 +0.2 2,609,422 - ECD_02493 0.43 +0.0 2,609,422 - ECD_02493 0.43 +0.1 2,609,484 - ECD_02493 0.48 +0.3 2,609,535 + ECD_02493 0.52 -0.2 2,609,633 + ECD_02493 0.60 -1.2 2,609,633 + ECD_02493 0.60 -0.7 2,609,645 + ECD_02493 0.61 -0.9 2,609,770 + ECD_02493 0.71 -0.4 2,609,770 + ECD_02493 0.71 -0.1 2,609,770 + ECD_02493 0.71 -0.7 2,609,771 - ECD_02493 0.71 -0.7 2,609,859 + ECD_02493 0.78 +0.3 2,609,859 + ECD_02493 0.78 +0.5 2,609,859 + ECD_02493 0.78 -0.1 2,609,859 + ECD_02493 0.78 -0.4 2,609,859 + ECD_02493 0.78 -2.6 2,609,860 - ECD_02493 0.78 +0.6 2,609,860 - ECD_02493 0.78 +0.2 2,609,860 - ECD_02493 0.78 -0.2 2,609,866 + ECD_02493 0.79 +0.3 2,609,902 + ECD_02493 0.82 -0.0 2,609,909 + ECD_02493 0.82 -1.1 2,609,910 - ECD_02493 0.83 -1.1 2,610,078 + +0.6 2,610,078 + -0.5 2,610,078 + -0.7 2,610,078 + -0.2 2,610,079 - +0.2 2,610,079 - -1.4 2,610,079 - -1.6 2,610,121 + -0.0 2,610,122 - +0.3 2,610,131 - -0.1 2,610,133 - +0.7 2,610,179 + -0.3 2,610,179 + -0.4 2,610,255 + ECD_02494 0.24 -0.4 2,610,255 + ECD_02494 0.24 -0.5 2,610,319 + ECD_02494 0.37 +0.8 2,610,367 - ECD_02494 0.47 -0.0 2,610,417 + ECD_02494 0.58 +0.3 2,610,421 + ECD_02494 0.58 -0.9 2,610,421 + ECD_02494 0.58 +0.3 2,610,421 + ECD_02494 0.58 -0.3 2,610,421 + ECD_02494 0.58 +0.0 2,610,421 + ECD_02494 0.58 -0.2 2,610,421 + ECD_02494 0.58 -0.9 2,610,422 - ECD_02494 0.59 -0.7 2,610,422 - ECD_02494 0.59 +0.6 2,610,422 - ECD_02494 0.59 +0.5 2,610,422 - ECD_02494 0.59 +0.1 2,610,422 - ECD_02494 0.59 -0.7 2,610,436 + ECD_02494 0.61 +0.8 2,610,436 + ECD_02494 0.61 +0.2 2,610,436 + ECD_02494 0.61 +0.3 2,610,436 + ECD_02494 0.61 -1.0 2,610,449 + ECD_02494 0.64 -0.4 2,610,450 - ECD_02494 0.64 +0.3 2,610,450 - ECD_02494 0.64 -1.0 2,610,450 - ECD_02494 0.64 -0.6 2,610,490 - ECD_02494 0.73 -1.0 2,610,490 - ECD_02494 0.73 +0.6 2,610,610 - -0.4 2,610,610 - -1.4 2,610,638 + -0.4
Or see this region's nucleotide sequence