Experiment: Control_TnH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01975 and ECD_01976 are separated by 12 nucleotides ECD_01976 and ECD_01977 overlap by 4 nucleotides ECD_01977 and ECD_01978 overlap by 4 nucleotides
ECD_01975: ECD_01975 - Hsp70 chaperone family protein, at 2,046,673 to 2,048,025
_01975
ECD_01976: ECD_01976 - protein kinase-related putative non-specific DNA-binding protein, at 2,048,038 to 2,049,978
_01976
ECD_01977: ECD_01977 - ser/thr phosphatase-related protein, at 2,049,975 to 2,050,736
_01977
ECD_01978: ECD_01978 - VMA domain protein, at 2,050,733 to 2,051,392
_01978
Position (kb)
2048
2049
2050 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2047.554 kb on - strand, within ECD_01975 at 2047.573 kb on + strand, within ECD_01975 at 2047.573 kb on + strand, within ECD_01975 at 2047.579 kb on - strand, within ECD_01975 at 2047.883 kb on - strand, within ECD_01975 at 2048.050 kb on + strand at 2048.419 kb on - strand, within ECD_01976 at 2048.619 kb on - strand, within ECD_01976 at 2048.828 kb on - strand, within ECD_01976 at 2049.058 kb on - strand, within ECD_01976 at 2049.131 kb on - strand, within ECD_01976 at 2049.217 kb on + strand, within ECD_01976 at 2049.218 kb on - strand, within ECD_01976 at 2049.235 kb on - strand, within ECD_01976 at 2049.460 kb on + strand, within ECD_01976 at 2049.538 kb on - strand, within ECD_01976 at 2049.621 kb on - strand, within ECD_01976 at 2049.677 kb on + strand, within ECD_01976 at 2049.678 kb on - strand, within ECD_01976 at 2049.963 kb on - strand at 2049.963 kb on - strand at 2049.963 kb on - strand at 2050.068 kb on + strand, within ECD_01977 at 2050.475 kb on + strand, within ECD_01977 at 2050.497 kb on - strand, within ECD_01977 at 2050.677 kb on + strand at 2050.678 kb on - strand at 2050.844 kb on + strand, within ECD_01978
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnH remove 2,047,554 - ECD_01975 0.65 -0.7 2,047,573 + ECD_01975 0.67 +1.3 2,047,573 + ECD_01975 0.67 -2.3 2,047,579 - ECD_01975 0.67 -1.1 2,047,883 - ECD_01975 0.89 +0.1 2,048,050 + +0.4 2,048,419 - ECD_01976 0.20 +0.7 2,048,619 - ECD_01976 0.30 +0.8 2,048,828 - ECD_01976 0.41 +0.3 2,049,058 - ECD_01976 0.53 +0.6 2,049,131 - ECD_01976 0.56 +0.3 2,049,217 + ECD_01976 0.61 -0.7 2,049,218 - ECD_01976 0.61 +0.3 2,049,235 - ECD_01976 0.62 +0.3 2,049,460 + ECD_01976 0.73 +0.0 2,049,538 - ECD_01976 0.77 +1.8 2,049,621 - ECD_01976 0.82 +0.5 2,049,677 + ECD_01976 0.84 -0.1 2,049,678 - ECD_01976 0.84 -0.0 2,049,963 - +0.5 2,049,963 - -0.3 2,049,963 - -0.9 2,050,068 + ECD_01977 0.12 +0.1 2,050,475 + ECD_01977 0.66 -0.5 2,050,497 - ECD_01977 0.69 -1.8 2,050,677 + -0.0 2,050,678 - +0.4 2,050,844 + ECD_01978 0.17 -1.3
Or see this region's nucleotide sequence