Experiment: Control_TnH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00403 and ECD_00404 are separated by 48 nucleotides ECD_00404 and ECD_00405 are separated by 217 nucleotides ECD_00405 and ECD_00406 are separated by 30 nucleotides
ECD_00403: ECD_00403 - ammonium transporter, at 442,012 to 443,298
_00403
ECD_00404: ECD_00404 - acyl-CoA thioesterase 2, at 443,347 to 444,207
_00404
ECD_00405: ECD_00405 - outer membrane lipoprotein, at 444,425 to 444,997
_00405
ECD_00406: ECD_00406 - excision repair protein, alkyltransferase-like protein ATL, at 445,028 to 445,417
_00406
Position (kb) 443
444
445 Strain fitness (log2 ratio) -1
0
1 at 442.363 kb on + strand, within ECD_00403 at 442.369 kb on + strand, within ECD_00403 at 442.369 kb on + strand, within ECD_00403 at 442.495 kb on + strand, within ECD_00403 at 442.495 kb on + strand, within ECD_00403 at 442.581 kb on + strand, within ECD_00403 at 442.702 kb on + strand, within ECD_00403 at 442.702 kb on + strand, within ECD_00403 at 442.703 kb on - strand, within ECD_00403 at 442.703 kb on - strand, within ECD_00403 at 442.839 kb on + strand, within ECD_00403 at 442.909 kb on + strand, within ECD_00403 at 442.947 kb on - strand, within ECD_00403 at 442.977 kb on + strand, within ECD_00403 at 442.977 kb on + strand, within ECD_00403 at 442.978 kb on - strand, within ECD_00403 at 443.055 kb on + strand, within ECD_00403 at 443.056 kb on - strand, within ECD_00403 at 443.288 kb on - strand at 443.395 kb on + strand at 443.468 kb on + strand, within ECD_00404 at 443.468 kb on + strand, within ECD_00404 at 443.468 kb on + strand, within ECD_00404 at 443.469 kb on - strand, within ECD_00404 at 443.573 kb on - strand, within ECD_00404 at 443.618 kb on + strand, within ECD_00404 at 443.618 kb on + strand, within ECD_00404 at 443.619 kb on - strand, within ECD_00404 at 443.764 kb on - strand, within ECD_00404 at 443.982 kb on - strand, within ECD_00404 at 443.997 kb on + strand, within ECD_00404 at 443.998 kb on - strand, within ECD_00404 at 444.037 kb on + strand, within ECD_00404 at 444.075 kb on - strand, within ECD_00404 at 444.116 kb on - strand, within ECD_00404 at 444.173 kb on - strand at 444.207 kb on + strand at 444.207 kb on + strand at 444.208 kb on - strand at 444.210 kb on - strand at 444.256 kb on + strand at 444.257 kb on - strand at 444.292 kb on + strand at 444.314 kb on - strand at 444.357 kb on + strand at 444.488 kb on - strand, within ECD_00405 at 444.556 kb on + strand, within ECD_00405 at 444.811 kb on - strand, within ECD_00405 at 444.815 kb on - strand, within ECD_00405 at 445.029 kb on + strand at 445.032 kb on + strand at 445.033 kb on - strand at 445.119 kb on - strand, within ECD_00406
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnH remove 442,363 + ECD_00403 0.27 +0.1 442,369 + ECD_00403 0.28 +0.0 442,369 + ECD_00403 0.28 -0.2 442,495 + ECD_00403 0.38 +0.5 442,495 + ECD_00403 0.38 +1.6 442,581 + ECD_00403 0.44 +0.5 442,702 + ECD_00403 0.54 -0.3 442,702 + ECD_00403 0.54 -1.4 442,703 - ECD_00403 0.54 +0.5 442,703 - ECD_00403 0.54 +0.8 442,839 + ECD_00403 0.64 +0.6 442,909 + ECD_00403 0.70 -0.1 442,947 - ECD_00403 0.73 +0.4 442,977 + ECD_00403 0.75 +1.0 442,977 + ECD_00403 0.75 +0.3 442,978 - ECD_00403 0.75 -0.4 443,055 + ECD_00403 0.81 -0.8 443,056 - ECD_00403 0.81 -0.9 443,288 - +0.4 443,395 + -0.2 443,468 + ECD_00404 0.14 +0.2 443,468 + ECD_00404 0.14 +0.2 443,468 + ECD_00404 0.14 +0.3 443,469 - ECD_00404 0.14 +0.2 443,573 - ECD_00404 0.26 +1.4 443,618 + ECD_00404 0.31 +0.7 443,618 + ECD_00404 0.31 +0.4 443,619 - ECD_00404 0.32 -0.5 443,764 - ECD_00404 0.48 +0.9 443,982 - ECD_00404 0.74 +0.3 443,997 + ECD_00404 0.75 +1.1 443,998 - ECD_00404 0.76 +0.3 444,037 + ECD_00404 0.80 -0.0 444,075 - ECD_00404 0.85 +0.5 444,116 - ECD_00404 0.89 -0.2 444,173 - +1.3 444,207 + +0.1 444,207 + +0.4 444,208 - +0.9 444,210 - +0.1 444,256 + -1.2 444,257 - -1.5 444,292 + +0.8 444,314 - +0.1 444,357 + -0.9 444,488 - ECD_00405 0.11 +0.8 444,556 + ECD_00405 0.23 -0.6 444,811 - ECD_00405 0.67 -0.1 444,815 - ECD_00405 0.68 -0.4 445,029 + +0.4 445,032 + +0.3 445,033 - +0.8 445,119 - ECD_00406 0.23 -0.1
Or see this region's nucleotide sequence