Experiment: Control_TnH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00325 and ECD_00326 are separated by 58 nucleotides ECD_00326 and ECD_00327 are separated by 259 nucleotides ECD_00327 and ECD_00328 are separated by 23 nucleotides ECD_00328 and ECD_00329 are separated by 462 nucleotides ECD_00329 and ECD_00330 are separated by 100 nucleotides
ECD_00325: ECD_00325 - microcin Bac7 uptake protein; outer membrane surface-exposed lipoprotein, at 362,497 to 363,591
_00325
ECD_00326: ECD_00326 - DUF2755 family inner membrane protein, at 363,650 to 363,958
_00326
ECD_00327: ECD_00327 - DUF2754 family putative inner membrane protein, at 364,218 to 364,430
_00327
ECD_00328: ECD_00328 - D-alanine-D-alanine ligase A, at 364,454 to 365,548
_00328
ECD_00329: ECD_00329 - anti-RssB factor, RpoS stabilzer during Pi starvation; anti-adapter protein, at 366,011 to 366,271
_00329
ECD_00330: ECD_00330 - bacterial alkaline phosphatase, at 366,372 to 367,787
_00330
Position (kb) 364
365
366 Strain fitness (log2 ratio) -1
0
1
2 at 363.579 kb on + strand at 363.580 kb on - strand at 363.625 kb on + strand at 363.645 kb on - strand at 363.645 kb on - strand at 363.645 kb on - strand at 363.713 kb on + strand, within ECD_00326 at 364.157 kb on + strand at 364.254 kb on + strand, within ECD_00327 at 364.254 kb on + strand, within ECD_00327 at 364.257 kb on + strand, within ECD_00327 at 364.277 kb on + strand, within ECD_00327 at 364.280 kb on - strand, within ECD_00327 at 364.339 kb on - strand, within ECD_00327 at 364.367 kb on + strand, within ECD_00327 at 364.434 kb on + strand at 364.570 kb on + strand, within ECD_00328 at 364.570 kb on + strand, within ECD_00328 at 364.571 kb on - strand, within ECD_00328 at 364.571 kb on - strand, within ECD_00328 at 364.571 kb on - strand, within ECD_00328 at 364.571 kb on - strand, within ECD_00328 at 364.770 kb on + strand, within ECD_00328 at 364.770 kb on + strand, within ECD_00328 at 364.770 kb on + strand, within ECD_00328 at 364.771 kb on - strand, within ECD_00328 at 364.789 kb on - strand, within ECD_00328 at 364.901 kb on - strand, within ECD_00328 at 364.956 kb on - strand, within ECD_00328 at 364.956 kb on - strand, within ECD_00328 at 364.998 kb on - strand, within ECD_00328 at 365.166 kb on - strand, within ECD_00328 at 365.174 kb on + strand, within ECD_00328 at 365.417 kb on - strand, within ECD_00328 at 365.453 kb on - strand at 365.551 kb on + strand at 365.582 kb on + strand at 365.583 kb on - strand at 365.587 kb on + strand at 365.587 kb on + strand at 365.743 kb on - strand at 366.236 kb on + strand, within ECD_00329 at 366.323 kb on - strand at 366.349 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnH remove 363,579 + -0.8 363,580 - +0.1 363,625 + +0.9 363,645 - +0.2 363,645 - -0.6 363,645 - -0.4 363,713 + ECD_00326 0.20 +1.2 364,157 + +0.4 364,254 + ECD_00327 0.17 -0.9 364,254 + ECD_00327 0.17 +0.7 364,257 + ECD_00327 0.18 -0.2 364,277 + ECD_00327 0.28 +0.3 364,280 - ECD_00327 0.29 -0.3 364,339 - ECD_00327 0.57 +0.1 364,367 + ECD_00327 0.70 -0.7 364,434 + -1.1 364,570 + ECD_00328 0.11 -0.6 364,570 + ECD_00328 0.11 +0.4 364,571 - ECD_00328 0.11 -1.1 364,571 - ECD_00328 0.11 +0.4 364,571 - ECD_00328 0.11 -0.2 364,571 - ECD_00328 0.11 -0.3 364,770 + ECD_00328 0.29 +0.9 364,770 + ECD_00328 0.29 -0.8 364,770 + ECD_00328 0.29 +1.0 364,771 - ECD_00328 0.29 -0.1 364,789 - ECD_00328 0.31 +0.6 364,901 - ECD_00328 0.41 +0.3 364,956 - ECD_00328 0.46 -0.1 364,956 - ECD_00328 0.46 +0.6 364,998 - ECD_00328 0.50 +1.4 365,166 - ECD_00328 0.65 +0.6 365,174 + ECD_00328 0.66 -0.2 365,417 - ECD_00328 0.88 +2.0 365,453 - -0.8 365,551 + -0.2 365,582 + -0.1 365,583 - +1.0 365,587 + -0.0 365,587 + +1.3 365,743 - -0.4 366,236 + ECD_00329 0.86 +0.4 366,323 - -0.4 366,349 + -0.2
Or see this region's nucleotide sequence