Strain Fitness in Escherichia coli BL21 around ECD_03062

Experiment: Laval1267

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03061 and ECD_03062 are separated by 13 nucleotidesECD_03062 and ECD_03063 are separated by 20 nucleotidesECD_03063 and ECD_03064 overlap by 4 nucleotides ECD_03061: ECD_03061 - putative calcium/sodium:proton antiporter, at 3,208,775 to 3,209,752 _03061 ECD_03062: ECD_03062 - D-arabinose 5-phosphate isomerase, at 3,209,766 to 3,210,752 _03062 ECD_03063: ECD_03063 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 3,210,773 to 3,211,339 _03063 ECD_03064: ECD_03064 - periplasmic membrane-anchored LPS-binding protein; LPS export protein, at 3,211,336 to 3,211,911 _03064 Position (kb) 3209 3210 3211Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3208.772 kb on + strandat 3208.772 kb on + strandat 3208.773 kb on - strandat 3208.782 kb on + strandat 3208.782 kb on + strandat 3208.782 kb on + strandat 3208.782 kb on + strandat 3208.798 kb on - strandat 3208.823 kb on + strandat 3208.913 kb on - strand, within ECD_03061at 3208.918 kb on + strand, within ECD_03061at 3208.918 kb on + strand, within ECD_03061at 3208.918 kb on + strand, within ECD_03061at 3209.008 kb on + strand, within ECD_03061at 3209.014 kb on + strand, within ECD_03061at 3209.014 kb on + strand, within ECD_03061at 3209.014 kb on + strand, within ECD_03061at 3209.014 kb on + strand, within ECD_03061at 3209.014 kb on + strand, within ECD_03061at 3209.015 kb on - strand, within ECD_03061at 3209.015 kb on - strand, within ECD_03061at 3209.015 kb on - strand, within ECD_03061at 3209.015 kb on - strand, within ECD_03061at 3209.015 kb on - strand, within ECD_03061at 3209.015 kb on - strand, within ECD_03061at 3209.016 kb on + strand, within ECD_03061at 3209.016 kb on + strand, within ECD_03061at 3209.017 kb on - strand, within ECD_03061at 3209.056 kb on + strand, within ECD_03061at 3209.076 kb on + strand, within ECD_03061at 3209.077 kb on - strand, within ECD_03061at 3209.088 kb on + strand, within ECD_03061at 3209.095 kb on - strand, within ECD_03061at 3209.127 kb on + strand, within ECD_03061at 3209.127 kb on + strand, within ECD_03061at 3209.133 kb on - strand, within ECD_03061at 3209.133 kb on - strand, within ECD_03061at 3209.146 kb on + strand, within ECD_03061at 3209.161 kb on + strand, within ECD_03061at 3209.162 kb on - strand, within ECD_03061at 3209.187 kb on + strand, within ECD_03061at 3209.187 kb on + strand, within ECD_03061at 3209.187 kb on + strand, within ECD_03061at 3209.187 kb on + strand, within ECD_03061at 3209.188 kb on - strand, within ECD_03061at 3209.188 kb on - strand, within ECD_03061at 3209.206 kb on + strand, within ECD_03061at 3209.323 kb on + strand, within ECD_03061at 3209.323 kb on + strand, within ECD_03061at 3209.323 kb on + strand, within ECD_03061at 3209.324 kb on - strand, within ECD_03061at 3209.381 kb on + strand, within ECD_03061at 3209.381 kb on + strand, within ECD_03061at 3209.460 kb on + strand, within ECD_03061at 3209.504 kb on - strand, within ECD_03061at 3209.524 kb on + strand, within ECD_03061at 3209.525 kb on - strand, within ECD_03061at 3209.527 kb on + strand, within ECD_03061at 3209.588 kb on + strand, within ECD_03061at 3209.589 kb on - strand, within ECD_03061at 3209.600 kb on + strand, within ECD_03061at 3209.601 kb on - strand, within ECD_03061at 3209.676 kb on + strandat 3209.676 kb on + strandat 3209.677 kb on - strandat 3209.682 kb on + strandat 3209.683 kb on - strandat 3209.683 kb on - strandat 3209.685 kb on + strandat 3209.685 kb on + strandat 3209.688 kb on + strandat 3209.688 kb on + strandat 3209.689 kb on - strandat 3209.706 kb on + strandat 3209.707 kb on - strandat 3209.707 kb on - strandat 3209.724 kb on - strandat 3209.750 kb on + strandat 3209.750 kb on + strandat 3209.765 kb on + strandat 3209.765 kb on + strandat 3209.765 kb on + strandat 3209.765 kb on + strandat 3209.765 kb on + strandat 3209.765 kb on + strandat 3209.776 kb on + strandat 3209.776 kb on + strandat 3209.783 kb on - strandat 3209.862 kb on + strandat 3209.862 kb on + strandat 3209.863 kb on - strandat 3210.077 kb on + strand, within ECD_03062at 3210.109 kb on + strand, within ECD_03062at 3210.110 kb on - strand, within ECD_03062at 3210.122 kb on + strand, within ECD_03062at 3210.122 kb on + strand, within ECD_03062at 3210.122 kb on + strand, within ECD_03062at 3210.137 kb on - strand, within ECD_03062at 3210.392 kb on + strand, within ECD_03062at 3210.392 kb on + strand, within ECD_03062at 3210.393 kb on - strand, within ECD_03062at 3210.422 kb on + strand, within ECD_03062at 3210.503 kb on + strand, within ECD_03062at 3210.503 kb on + strand, within ECD_03062at 3210.503 kb on + strand, within ECD_03062at 3210.503 kb on + strand, within ECD_03062at 3210.577 kb on + strand, within ECD_03062at 3210.577 kb on + strand, within ECD_03062at 3210.610 kb on + strand, within ECD_03062at 3210.652 kb on + strand, within ECD_03062at 3210.652 kb on + strand, within ECD_03062at 3210.652 kb on + strand, within ECD_03062at 3210.715 kb on + strandat 3210.715 kb on + strandat 3210.715 kb on + strandat 3210.715 kb on + strandat 3210.715 kb on + strandat 3210.715 kb on + strandat 3210.715 kb on + strandat 3210.715 kb on + strandat 3210.719 kb on + strandat 3210.719 kb on + strandat 3210.719 kb on + strandat 3210.719 kb on + strandat 3210.719 kb on + strandat 3210.719 kb on + strandat 3210.719 kb on + strandat 3210.719 kb on + strandat 3210.719 kb on + strandat 3210.719 kb on + strandat 3210.719 kb on + strandat 3210.719 kb on + strandat 3210.719 kb on + strandat 3210.719 kb on + strandat 3210.730 kb on + strandat 3210.899 kb on + strand, within ECD_03063at 3210.899 kb on + strand, within ECD_03063at 3210.899 kb on + strand, within ECD_03063at 3210.899 kb on + strand, within ECD_03063at 3211.058 kb on + strand, within ECD_03063at 3211.136 kb on + strand, within ECD_03063at 3211.287 kb on + strandat 3211.287 kb on + strandat 3211.287 kb on + strandat 3211.287 kb on + strandat 3211.287 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1267
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3,208,772 + +0.7
3,208,772 + +0.1
3,208,773 - +0.4
3,208,782 + +0.7
3,208,782 + -0.7
3,208,782 + -0.9
3,208,782 + +0.7
3,208,798 - -0.3
3,208,823 + +0.7
3,208,913 - ECD_03061 0.14 +0.9
3,208,918 + ECD_03061 0.15 -1.1
3,208,918 + ECD_03061 0.15 +0.6
3,208,918 + ECD_03061 0.15 -0.1
3,209,008 + ECD_03061 0.24 +0.1
3,209,014 + ECD_03061 0.24 -1.9
3,209,014 + ECD_03061 0.24 -1.9
3,209,014 + ECD_03061 0.24 -0.4
3,209,014 + ECD_03061 0.24 -0.1
3,209,014 + ECD_03061 0.24 +0.4
3,209,015 - ECD_03061 0.25 +1.2
3,209,015 - ECD_03061 0.25 +1.7
3,209,015 - ECD_03061 0.25 +0.3
3,209,015 - ECD_03061 0.25 +0.1
3,209,015 - ECD_03061 0.25 +2.5
3,209,015 - ECD_03061 0.25 -0.1
3,209,016 + ECD_03061 0.25 -0.1
3,209,016 + ECD_03061 0.25 -0.3
3,209,017 - ECD_03061 0.25 +0.9
3,209,056 + ECD_03061 0.29 +1.0
3,209,076 + ECD_03061 0.31 +0.4
3,209,077 - ECD_03061 0.31 -1.7
3,209,088 + ECD_03061 0.32 +0.3
3,209,095 - ECD_03061 0.33 +2.2
3,209,127 + ECD_03061 0.36 +1.0
3,209,127 + ECD_03061 0.36 +1.3
3,209,133 - ECD_03061 0.37 +0.7
3,209,133 - ECD_03061 0.37 +0.2
3,209,146 + ECD_03061 0.38 -0.0
3,209,161 + ECD_03061 0.39 +0.6
3,209,162 - ECD_03061 0.40 +1.0
3,209,187 + ECD_03061 0.42 -0.2
3,209,187 + ECD_03061 0.42 +0.4
3,209,187 + ECD_03061 0.42 +1.3
3,209,187 + ECD_03061 0.42 -0.3
3,209,188 - ECD_03061 0.42 -0.7
3,209,188 - ECD_03061 0.42 -0.7
3,209,206 + ECD_03061 0.44 -0.2
3,209,323 + ECD_03061 0.56 -1.7
3,209,323 + ECD_03061 0.56 -0.2
3,209,323 + ECD_03061 0.56 -0.3
3,209,324 - ECD_03061 0.56 -0.3
3,209,381 + ECD_03061 0.62 -0.4
3,209,381 + ECD_03061 0.62 -1.3
3,209,460 + ECD_03061 0.70 -0.3
3,209,504 - ECD_03061 0.75 -0.5
3,209,524 + ECD_03061 0.77 -0.5
3,209,525 - ECD_03061 0.77 +0.3
3,209,527 + ECD_03061 0.77 +1.4
3,209,588 + ECD_03061 0.83 -0.2
3,209,589 - ECD_03061 0.83 -1.3
3,209,600 + ECD_03061 0.84 +0.2
3,209,601 - ECD_03061 0.84 +0.7
3,209,676 + +1.2
3,209,676 + +0.1
3,209,677 - -0.2
3,209,682 + -0.3
3,209,683 - +0.7
3,209,683 - +0.2
3,209,685 + -0.8
3,209,685 + -0.1
3,209,688 + +0.4
3,209,688 + +0.3
3,209,689 - -0.2
3,209,706 + -0.3
3,209,707 - -0.0
3,209,707 - -1.2
3,209,724 - -0.6
3,209,750 + -0.5
3,209,750 + -0.4
3,209,765 + +0.9
3,209,765 + -0.9
3,209,765 + -0.3
3,209,765 + -0.1
3,209,765 + +3.0
3,209,765 + +0.1
3,209,776 + +0.2
3,209,776 + -0.4
3,209,783 - -0.0
3,209,862 + +1.0
3,209,862 + -0.1
3,209,863 - -0.3
3,210,077 + ECD_03062 0.32 +0.5
3,210,109 + ECD_03062 0.35 -1.8
3,210,110 - ECD_03062 0.35 -0.8
3,210,122 + ECD_03062 0.36 +0.9
3,210,122 + ECD_03062 0.36 -0.1
3,210,122 + ECD_03062 0.36 +0.5
3,210,137 - ECD_03062 0.38 -0.8
3,210,392 + ECD_03062 0.63 -0.3
3,210,392 + ECD_03062 0.63 +0.2
3,210,393 - ECD_03062 0.64 +0.7
3,210,422 + ECD_03062 0.66 -0.3
3,210,503 + ECD_03062 0.75 -0.1
3,210,503 + ECD_03062 0.75 +0.5
3,210,503 + ECD_03062 0.75 -0.2
3,210,503 + ECD_03062 0.75 +0.7
3,210,577 + ECD_03062 0.82 +0.1
3,210,577 + ECD_03062 0.82 +0.7
3,210,610 + ECD_03062 0.86 +0.4
3,210,652 + ECD_03062 0.90 -0.2
3,210,652 + ECD_03062 0.90 -0.3
3,210,652 + ECD_03062 0.90 -0.0
3,210,715 + -0.1
3,210,715 + +0.6
3,210,715 + +0.8
3,210,715 + -0.3
3,210,715 + +0.2
3,210,715 + -1.6
3,210,715 + -0.3
3,210,715 + +1.2
3,210,719 + +0.1
3,210,719 + +0.8
3,210,719 + -0.8
3,210,719 + -0.5
3,210,719 + -0.9
3,210,719 + +0.1
3,210,719 + -0.2
3,210,719 + -0.3
3,210,719 + -0.4
3,210,719 + -0.2
3,210,719 + +0.0
3,210,719 + -0.1
3,210,719 + -0.8
3,210,719 + -0.4
3,210,730 + +0.8
3,210,899 + ECD_03063 0.22 -2.0
3,210,899 + ECD_03063 0.22 -1.3
3,210,899 + ECD_03063 0.22 +0.2
3,210,899 + ECD_03063 0.22 -0.6
3,211,058 + ECD_03063 0.50 -0.9
3,211,136 + ECD_03063 0.64 -0.3
3,211,287 + +0.8
3,211,287 + +0.7
3,211,287 + -0.2
3,211,287 + -0.6
3,211,287 + -0.1

Or see this region's nucleotide sequence