Experiment: Laval1267
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02942 and ECD_02943 are separated by 41 nucleotides ECD_02943 and ECD_02944 are separated by 218 nucleotides ECD_02944 and ECD_02945 are separated by 183 nucleotides
ECD_02942: ECD_02942 - putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent, at 3,085,576 to 3,086,955
_02942
ECD_02943: ECD_02943 - putative tRNA binding protein; putative tRNA corner chaperone, at 3,086,997 to 3,087,329
_02943
ECD_02944: ECD_02944 - transcriptional repressor, at 3,087,548 to 3,088,531
_02944
ECD_02945: ECD_02945 - evolved beta-D-galactosidase, alpha subunit, at 3,088,715 to 3,091,807
_02945
Position (kb)
3087
3088
3089 Strain fitness (log2 ratio)
-2
-1
0
1 at 3086.562 kb on + strand, within ECD_02942 at 3086.562 kb on + strand, within ECD_02942 at 3086.562 kb on + strand, within ECD_02942 at 3086.563 kb on - strand, within ECD_02942 at 3086.668 kb on - strand, within ECD_02942 at 3086.781 kb on + strand, within ECD_02942 at 3086.937 kb on - strand at 3086.937 kb on - strand at 3087.132 kb on + strand, within ECD_02943 at 3087.133 kb on - strand, within ECD_02943 at 3087.133 kb on - strand, within ECD_02943 at 3087.175 kb on + strand, within ECD_02943 at 3087.228 kb on + strand, within ECD_02943 at 3087.229 kb on - strand, within ECD_02943 at 3087.236 kb on - strand, within ECD_02943 at 3087.314 kb on - strand at 3087.508 kb on - strand at 3087.559 kb on - strand at 3087.600 kb on + strand at 3087.601 kb on - strand at 3087.612 kb on + strand at 3087.612 kb on + strand at 3087.612 kb on + strand at 3087.613 kb on - strand at 3087.739 kb on + strand, within ECD_02944 at 3087.739 kb on + strand, within ECD_02944 at 3087.740 kb on - strand, within ECD_02944 at 3087.740 kb on - strand, within ECD_02944 at 3087.749 kb on - strand, within ECD_02944 at 3087.752 kb on + strand, within ECD_02944 at 3087.752 kb on + strand, within ECD_02944 at 3087.752 kb on + strand, within ECD_02944 at 3087.752 kb on + strand, within ECD_02944 at 3087.752 kb on + strand, within ECD_02944 at 3087.752 kb on + strand, within ECD_02944 at 3087.752 kb on + strand, within ECD_02944 at 3087.752 kb on + strand, within ECD_02944 at 3087.753 kb on - strand, within ECD_02944 at 3087.753 kb on - strand, within ECD_02944 at 3087.759 kb on - strand, within ECD_02944 at 3087.788 kb on + strand, within ECD_02944 at 3087.789 kb on - strand, within ECD_02944 at 3087.792 kb on - strand, within ECD_02944 at 3087.873 kb on + strand, within ECD_02944 at 3087.883 kb on + strand, within ECD_02944 at 3087.903 kb on + strand, within ECD_02944 at 3087.903 kb on + strand, within ECD_02944 at 3087.903 kb on + strand, within ECD_02944 at 3087.961 kb on + strand, within ECD_02944 at 3087.961 kb on + strand, within ECD_02944 at 3087.962 kb on - strand, within ECD_02944 at 3087.962 kb on - strand, within ECD_02944 at 3087.962 kb on - strand, within ECD_02944 at 3087.962 kb on - strand, within ECD_02944 at 3088.052 kb on + strand, within ECD_02944 at 3088.052 kb on + strand, within ECD_02944 at 3088.052 kb on + strand, within ECD_02944 at 3088.053 kb on - strand, within ECD_02944 at 3088.053 kb on - strand, within ECD_02944 at 3088.053 kb on - strand, within ECD_02944 at 3088.053 kb on - strand, within ECD_02944 at 3088.053 kb on - strand, within ECD_02944 at 3088.055 kb on - strand, within ECD_02944 at 3088.076 kb on - strand, within ECD_02944 at 3088.165 kb on - strand, within ECD_02944 at 3088.211 kb on + strand, within ECD_02944 at 3088.486 kb on - strand at 3088.486 kb on - strand at 3088.669 kb on + strand at 3088.669 kb on + strand at 3088.669 kb on + strand at 3088.808 kb on - strand at 3088.915 kb on - strand at 3088.934 kb on - strand at 3088.934 kb on - strand at 3088.934 kb on - strand at 3088.936 kb on + strand at 3088.982 kb on + strand at 3088.984 kb on + strand at 3088.985 kb on - strand at 3089.060 kb on - strand, within ECD_02945 at 3089.138 kb on + strand, within ECD_02945 at 3089.138 kb on + strand, within ECD_02945 at 3089.139 kb on - strand, within ECD_02945 at 3089.139 kb on - strand, within ECD_02945 at 3089.139 kb on - strand, within ECD_02945 at 3089.153 kb on + strand, within ECD_02945 at 3089.153 kb on + strand, within ECD_02945 at 3089.153 kb on + strand, within ECD_02945 at 3089.154 kb on - strand, within ECD_02945 at 3089.264 kb on - strand, within ECD_02945 at 3089.264 kb on - strand, within ECD_02945 at 3089.267 kb on + strand, within ECD_02945 at 3089.267 kb on + strand, within ECD_02945 at 3089.268 kb on - strand, within ECD_02945 at 3089.268 kb on - strand, within ECD_02945 at 3089.284 kb on + strand, within ECD_02945 at 3089.284 kb on + strand, within ECD_02945 at 3089.284 kb on + strand, within ECD_02945 at 3089.284 kb on + strand, within ECD_02945 at 3089.285 kb on - strand, within ECD_02945 at 3089.285 kb on - strand, within ECD_02945 at 3089.345 kb on - strand, within ECD_02945 at 3089.365 kb on + strand, within ECD_02945 at 3089.384 kb on + strand, within ECD_02945 at 3089.385 kb on - strand, within ECD_02945 at 3089.385 kb on - strand, within ECD_02945 at 3089.460 kb on - strand, within ECD_02945 at 3089.462 kb on - strand, within ECD_02945
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1267 remove 3,086,562 + ECD_02942 0.71 +0.4 3,086,562 + ECD_02942 0.71 +0.6 3,086,562 + ECD_02942 0.71 -0.5 3,086,563 - ECD_02942 0.72 +0.5 3,086,668 - ECD_02942 0.79 -0.5 3,086,781 + ECD_02942 0.87 +1.6 3,086,937 - -0.1 3,086,937 - +0.0 3,087,132 + ECD_02943 0.41 -2.0 3,087,133 - ECD_02943 0.41 -0.9 3,087,133 - ECD_02943 0.41 +1.0 3,087,175 + ECD_02943 0.53 -1.4 3,087,228 + ECD_02943 0.69 +0.9 3,087,229 - ECD_02943 0.70 -2.0 3,087,236 - ECD_02943 0.72 +0.4 3,087,314 - +0.6 3,087,508 - +0.2 3,087,559 - +0.9 3,087,600 + +0.1 3,087,601 - +0.3 3,087,612 + +1.7 3,087,612 + +1.6 3,087,612 + +1.1 3,087,613 - +0.5 3,087,739 + ECD_02944 0.19 +1.3 3,087,739 + ECD_02944 0.19 -0.5 3,087,740 - ECD_02944 0.20 -0.3 3,087,740 - ECD_02944 0.20 +1.3 3,087,749 - ECD_02944 0.20 +1.2 3,087,752 + ECD_02944 0.21 +1.2 3,087,752 + ECD_02944 0.21 +0.5 3,087,752 + ECD_02944 0.21 +0.8 3,087,752 + ECD_02944 0.21 -1.7 3,087,752 + ECD_02944 0.21 -0.6 3,087,752 + ECD_02944 0.21 -0.4 3,087,752 + ECD_02944 0.21 +0.3 3,087,752 + ECD_02944 0.21 -0.5 3,087,753 - ECD_02944 0.21 +0.5 3,087,753 - ECD_02944 0.21 +0.5 3,087,759 - ECD_02944 0.21 -0.1 3,087,788 + ECD_02944 0.24 -0.4 3,087,789 - ECD_02944 0.24 +0.6 3,087,792 - ECD_02944 0.25 +1.2 3,087,873 + ECD_02944 0.33 -0.4 3,087,883 + ECD_02944 0.34 +0.6 3,087,903 + ECD_02944 0.36 +1.0 3,087,903 + ECD_02944 0.36 +0.2 3,087,903 + ECD_02944 0.36 -1.0 3,087,961 + ECD_02944 0.42 -0.1 3,087,961 + ECD_02944 0.42 -1.0 3,087,962 - ECD_02944 0.42 -0.8 3,087,962 - ECD_02944 0.42 +0.2 3,087,962 - ECD_02944 0.42 +0.9 3,087,962 - ECD_02944 0.42 +0.4 3,088,052 + ECD_02944 0.51 +1.0 3,088,052 + ECD_02944 0.51 +0.3 3,088,052 + ECD_02944 0.51 +0.9 3,088,053 - ECD_02944 0.51 -0.2 3,088,053 - ECD_02944 0.51 +0.1 3,088,053 - ECD_02944 0.51 +0.6 3,088,053 - ECD_02944 0.51 -0.5 3,088,053 - ECD_02944 0.51 -2.2 3,088,055 - ECD_02944 0.52 +0.4 3,088,076 - ECD_02944 0.54 -0.2 3,088,165 - ECD_02944 0.63 +0.6 3,088,211 + ECD_02944 0.67 +1.3 3,088,486 - -1.5 3,088,486 - +0.1 3,088,669 + -0.5 3,088,669 + -0.4 3,088,669 + +0.6 3,088,808 - -0.6 3,088,915 - -1.2 3,088,934 - +0.5 3,088,934 - -0.3 3,088,934 - +0.6 3,088,936 + +1.0 3,088,982 + -0.2 3,088,984 + +0.3 3,088,985 - +0.3 3,089,060 - ECD_02945 0.11 +0.4 3,089,138 + ECD_02945 0.14 -0.7 3,089,138 + ECD_02945 0.14 +0.9 3,089,139 - ECD_02945 0.14 +0.0 3,089,139 - ECD_02945 0.14 +0.3 3,089,139 - ECD_02945 0.14 -1.5 3,089,153 + ECD_02945 0.14 +0.2 3,089,153 + ECD_02945 0.14 +0.6 3,089,153 + ECD_02945 0.14 -0.2 3,089,154 - ECD_02945 0.14 +0.6 3,089,264 - ECD_02945 0.18 +0.1 3,089,264 - ECD_02945 0.18 -0.1 3,089,267 + ECD_02945 0.18 -0.6 3,089,267 + ECD_02945 0.18 +0.6 3,089,268 - ECD_02945 0.18 -1.2 3,089,268 - ECD_02945 0.18 +1.6 3,089,284 + ECD_02945 0.18 +0.4 3,089,284 + ECD_02945 0.18 -0.5 3,089,284 + ECD_02945 0.18 +0.1 3,089,284 + ECD_02945 0.18 -0.2 3,089,285 - ECD_02945 0.18 -0.1 3,089,285 - ECD_02945 0.18 -0.2 3,089,345 - ECD_02945 0.20 +0.0 3,089,365 + ECD_02945 0.21 +0.9 3,089,384 + ECD_02945 0.22 +0.1 3,089,385 - ECD_02945 0.22 +1.4 3,089,385 - ECD_02945 0.22 -0.4 3,089,460 - ECD_02945 0.24 +0.6 3,089,462 - ECD_02945 0.24 +0.6
Or see this region's nucleotide sequence