Experiment: Laval1267
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02574 and ECD_02575 are separated by 124 nucleotides ECD_02575 and ECD_02576 are separated by 211 nucleotides ECD_02576 and ECD_02577 are separated by 3 nucleotides ECD_02577 and ECD_02578 overlap by 10 nucleotides
ECD_02574: ECD_02574 - hydrogenase 3, Fe-S subunit, at 2,689,205 to 2,689,816
_02574
ECD_02575: ECD_02575 - regulator of the transcriptional regulator FhlA, at 2,689,941 to 2,690,402
_02575
ECD_02576: ECD_02576 - protein involved in nickel insertion into hydrogenases 3, at 2,690,614 to 2,690,964
_02576
ECD_02577: ECD_02577 - GTP hydrolase, at 2,690,968 to 2,691,840
_02577
ECD_02578: ECD_02578 - hydrogenase maturation protein, at 2,691,831 to 2,692,103
_02578
Position (kb)
2690
2691 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2689.803 kb on - strand at 2689.803 kb on - strand at 2689.912 kb on - strand at 2689.912 kb on - strand at 2690.003 kb on + strand, within ECD_02575 at 2690.011 kb on + strand, within ECD_02575 at 2690.011 kb on + strand, within ECD_02575 at 2690.011 kb on + strand, within ECD_02575 at 2690.011 kb on + strand, within ECD_02575 at 2690.011 kb on + strand, within ECD_02575 at 2690.011 kb on + strand, within ECD_02575 at 2690.011 kb on + strand, within ECD_02575 at 2690.012 kb on - strand, within ECD_02575 at 2690.012 kb on - strand, within ECD_02575 at 2690.012 kb on - strand, within ECD_02575 at 2690.012 kb on - strand, within ECD_02575 at 2690.012 kb on - strand, within ECD_02575 at 2690.012 kb on - strand, within ECD_02575 at 2690.012 kb on - strand, within ECD_02575 at 2690.012 kb on - strand, within ECD_02575 at 2690.012 kb on - strand, within ECD_02575 at 2690.012 kb on - strand, within ECD_02575 at 2690.013 kb on + strand, within ECD_02575 at 2690.013 kb on + strand, within ECD_02575 at 2690.013 kb on + strand, within ECD_02575 at 2690.013 kb on + strand, within ECD_02575 at 2690.013 kb on + strand, within ECD_02575 at 2690.013 kb on + strand, within ECD_02575 at 2690.014 kb on - strand, within ECD_02575 at 2690.014 kb on - strand, within ECD_02575 at 2690.014 kb on - strand, within ECD_02575 at 2690.014 kb on - strand, within ECD_02575 at 2690.014 kb on - strand, within ECD_02575 at 2690.014 kb on - strand, within ECD_02575 at 2690.014 kb on - strand, within ECD_02575 at 2690.014 kb on - strand, within ECD_02575 at 2690.014 kb on - strand, within ECD_02575 at 2690.014 kb on - strand, within ECD_02575 at 2690.023 kb on + strand, within ECD_02575 at 2690.047 kb on + strand, within ECD_02575 at 2690.047 kb on + strand, within ECD_02575 at 2690.047 kb on + strand, within ECD_02575 at 2690.047 kb on + strand, within ECD_02575 at 2690.047 kb on + strand, within ECD_02575 at 2690.048 kb on - strand, within ECD_02575 at 2690.048 kb on - strand, within ECD_02575 at 2690.048 kb on - strand, within ECD_02575 at 2690.048 kb on - strand, within ECD_02575 at 2690.048 kb on - strand, within ECD_02575 at 2690.048 kb on - strand, within ECD_02575 at 2690.164 kb on + strand, within ECD_02575 at 2690.164 kb on + strand, within ECD_02575 at 2690.165 kb on - strand, within ECD_02575 at 2690.165 kb on - strand, within ECD_02575 at 2690.165 kb on - strand, within ECD_02575 at 2690.165 kb on - strand, within ECD_02575 at 2690.165 kb on - strand, within ECD_02575 at 2690.165 kb on - strand, within ECD_02575 at 2690.165 kb on - strand, within ECD_02575 at 2690.165 kb on - strand, within ECD_02575 at 2690.167 kb on + strand, within ECD_02575 at 2690.167 kb on + strand, within ECD_02575 at 2690.168 kb on - strand, within ECD_02575 at 2690.168 kb on - strand, within ECD_02575 at 2690.179 kb on - strand, within ECD_02575 at 2690.187 kb on - strand, within ECD_02575 at 2690.209 kb on + strand, within ECD_02575 at 2690.209 kb on + strand, within ECD_02575 at 2690.209 kb on + strand, within ECD_02575 at 2690.210 kb on - strand, within ECD_02575 at 2690.210 kb on - strand, within ECD_02575 at 2690.210 kb on - strand, within ECD_02575 at 2690.210 kb on - strand, within ECD_02575 at 2690.210 kb on - strand, within ECD_02575 at 2690.210 kb on - strand, within ECD_02575 at 2690.210 kb on - strand, within ECD_02575 at 2690.210 kb on - strand, within ECD_02575 at 2690.210 kb on - strand, within ECD_02575 at 2690.210 kb on - strand, within ECD_02575 at 2690.323 kb on + strand, within ECD_02575 at 2690.323 kb on + strand, within ECD_02575 at 2690.324 kb on - strand, within ECD_02575 at 2690.324 kb on - strand, within ECD_02575 at 2690.324 kb on - strand, within ECD_02575 at 2690.324 kb on - strand, within ECD_02575 at 2690.324 kb on - strand, within ECD_02575 at 2690.324 kb on - strand, within ECD_02575 at 2690.324 kb on - strand, within ECD_02575 at 2690.343 kb on + strand, within ECD_02575 at 2690.369 kb on - strand at 2690.369 kb on - strand at 2690.369 kb on - strand at 2690.369 kb on - strand at 2690.386 kb on - strand at 2690.396 kb on + strand at 2690.396 kb on + strand at 2690.396 kb on + strand at 2690.397 kb on - strand at 2690.397 kb on - strand at 2690.586 kb on + strand at 2690.596 kb on + strand at 2690.596 kb on + strand at 2690.596 kb on + strand at 2690.596 kb on + strand at 2690.596 kb on + strand at 2690.596 kb on + strand at 2690.596 kb on + strand at 2690.597 kb on - strand at 2690.597 kb on - strand at 2690.597 kb on - strand at 2690.597 kb on - strand at 2690.597 kb on - strand at 2690.600 kb on + strand at 2690.624 kb on + strand at 2690.624 kb on + strand at 2690.691 kb on - strand, within ECD_02576 at 2690.691 kb on - strand, within ECD_02576 at 2690.793 kb on + strand, within ECD_02576 at 2690.793 kb on + strand, within ECD_02576 at 2690.848 kb on + strand, within ECD_02576 at 2690.848 kb on + strand, within ECD_02576 at 2690.848 kb on + strand, within ECD_02576 at 2690.848 kb on + strand, within ECD_02576 at 2690.848 kb on + strand, within ECD_02576 at 2690.848 kb on + strand, within ECD_02576 at 2690.848 kb on + strand, within ECD_02576 at 2690.848 kb on + strand, within ECD_02576 at 2690.848 kb on + strand, within ECD_02576 at 2690.848 kb on + strand, within ECD_02576 at 2690.849 kb on - strand, within ECD_02576 at 2690.930 kb on + strand at 2690.931 kb on - strand at 2690.946 kb on - strand at 2690.946 kb on - strand at 2690.951 kb on + strand at 2690.951 kb on + strand at 2690.951 kb on + strand at 2690.951 kb on + strand at 2690.951 kb on + strand at 2690.951 kb on + strand at 2690.952 kb on - strand at 2690.952 kb on - strand at 2690.952 kb on - strand at 2690.973 kb on + strand at 2690.973 kb on + strand at 2690.973 kb on + strand at 2690.973 kb on + strand at 2690.974 kb on - strand at 2690.974 kb on - strand at 2690.974 kb on - strand at 2690.974 kb on - strand at 2690.974 kb on - strand at 2690.974 kb on - strand at 2691.004 kb on + strand at 2691.004 kb on + strand at 2691.004 kb on + strand at 2691.004 kb on + strand at 2691.004 kb on + strand at 2691.004 kb on + strand at 2691.004 kb on + strand at 2691.005 kb on - strand at 2691.005 kb on - strand at 2691.005 kb on - strand at 2691.005 kb on - strand at 2691.005 kb on - strand at 2691.005 kb on - strand at 2691.005 kb on - strand at 2691.005 kb on - strand at 2691.005 kb on - strand at 2691.025 kb on - strand at 2691.025 kb on - strand at 2691.045 kb on + strand at 2691.096 kb on + strand, within ECD_02577 at 2691.096 kb on + strand, within ECD_02577 at 2691.145 kb on + strand, within ECD_02577 at 2691.342 kb on - strand, within ECD_02577 at 2691.375 kb on + strand, within ECD_02577 at 2691.375 kb on + strand, within ECD_02577 at 2691.376 kb on - strand, within ECD_02577 at 2691.376 kb on - strand, within ECD_02577 at 2691.457 kb on - strand, within ECD_02577 at 2691.525 kb on + strand, within ECD_02577 at 2691.525 kb on + strand, within ECD_02577 at 2691.526 kb on - strand, within ECD_02577 at 2691.557 kb on + strand, within ECD_02577 at 2691.557 kb on + strand, within ECD_02577 at 2691.558 kb on - strand, within ECD_02577 at 2691.558 kb on - strand, within ECD_02577 at 2691.640 kb on + strand, within ECD_02577 at 2691.648 kb on + strand, within ECD_02577 at 2691.648 kb on + strand, within ECD_02577 at 2691.648 kb on + strand, within ECD_02577 at 2691.648 kb on + strand, within ECD_02577 at 2691.649 kb on - strand, within ECD_02577 at 2691.649 kb on - strand, within ECD_02577 at 2691.649 kb on - strand, within ECD_02577 at 2691.700 kb on + strand, within ECD_02577 at 2691.700 kb on + strand, within ECD_02577 at 2691.771 kb on + strand at 2691.771 kb on + strand at 2691.771 kb on + strand at 2691.771 kb on + strand at 2691.772 kb on - strand at 2691.838 kb on + strand at 2691.839 kb on - strand at 2691.839 kb on - strand at 2691.839 kb on - strand at 2691.839 kb on - strand at 2691.919 kb on + strand, within ECD_02578 at 2691.919 kb on + strand, within ECD_02578 at 2691.919 kb on + strand, within ECD_02578 at 2691.919 kb on + strand, within ECD_02578 at 2691.919 kb on + strand, within ECD_02578 at 2691.919 kb on + strand, within ECD_02578 at 2691.919 kb on + strand, within ECD_02578 at 2691.920 kb on - strand, within ECD_02578 at 2691.920 kb on - strand, within ECD_02578 at 2691.920 kb on - strand, within ECD_02578
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1267 remove 2,689,803 - +1.1 2,689,803 - +0.2 2,689,912 - -1.1 2,689,912 - +0.7 2,690,003 + ECD_02575 0.13 +0.8 2,690,011 + ECD_02575 0.15 +0.1 2,690,011 + ECD_02575 0.15 +0.1 2,690,011 + ECD_02575 0.15 -0.4 2,690,011 + ECD_02575 0.15 +0.3 2,690,011 + ECD_02575 0.15 +3.0 2,690,011 + ECD_02575 0.15 +0.9 2,690,011 + ECD_02575 0.15 +0.6 2,690,012 - ECD_02575 0.15 -0.7 2,690,012 - ECD_02575 0.15 -0.6 2,690,012 - ECD_02575 0.15 +0.4 2,690,012 - ECD_02575 0.15 -0.8 2,690,012 - ECD_02575 0.15 -0.3 2,690,012 - ECD_02575 0.15 +0.2 2,690,012 - ECD_02575 0.15 +0.3 2,690,012 - ECD_02575 0.15 -0.3 2,690,012 - ECD_02575 0.15 +0.6 2,690,012 - ECD_02575 0.15 -0.0 2,690,013 + ECD_02575 0.16 +1.2 2,690,013 + ECD_02575 0.16 +0.7 2,690,013 + ECD_02575 0.16 +0.5 2,690,013 + ECD_02575 0.16 +0.8 2,690,013 + ECD_02575 0.16 -0.6 2,690,013 + ECD_02575 0.16 -0.9 2,690,014 - ECD_02575 0.16 +0.8 2,690,014 - ECD_02575 0.16 +0.1 2,690,014 - ECD_02575 0.16 +1.3 2,690,014 - ECD_02575 0.16 -0.6 2,690,014 - ECD_02575 0.16 +0.5 2,690,014 - ECD_02575 0.16 +1.1 2,690,014 - ECD_02575 0.16 -1.0 2,690,014 - ECD_02575 0.16 +0.6 2,690,014 - ECD_02575 0.16 +0.4 2,690,014 - ECD_02575 0.16 -0.4 2,690,023 + ECD_02575 0.18 -0.4 2,690,047 + ECD_02575 0.23 -0.5 2,690,047 + ECD_02575 0.23 +1.6 2,690,047 + ECD_02575 0.23 -0.9 2,690,047 + ECD_02575 0.23 +0.3 2,690,047 + ECD_02575 0.23 -0.1 2,690,048 - ECD_02575 0.23 +0.0 2,690,048 - ECD_02575 0.23 +1.0 2,690,048 - ECD_02575 0.23 +0.0 2,690,048 - ECD_02575 0.23 +0.5 2,690,048 - ECD_02575 0.23 +0.9 2,690,048 - ECD_02575 0.23 -0.3 2,690,164 + ECD_02575 0.48 +1.1 2,690,164 + ECD_02575 0.48 -0.0 2,690,165 - ECD_02575 0.48 +1.0 2,690,165 - ECD_02575 0.48 +0.3 2,690,165 - ECD_02575 0.48 -0.0 2,690,165 - ECD_02575 0.48 -0.2 2,690,165 - ECD_02575 0.48 +0.0 2,690,165 - ECD_02575 0.48 +0.9 2,690,165 - ECD_02575 0.48 -0.8 2,690,165 - ECD_02575 0.48 -0.1 2,690,167 + ECD_02575 0.49 -0.3 2,690,167 + ECD_02575 0.49 +0.2 2,690,168 - ECD_02575 0.49 +1.0 2,690,168 - ECD_02575 0.49 -0.4 2,690,179 - ECD_02575 0.52 -0.4 2,690,187 - ECD_02575 0.53 +0.2 2,690,209 + ECD_02575 0.58 +0.4 2,690,209 + ECD_02575 0.58 -1.1 2,690,209 + ECD_02575 0.58 +1.6 2,690,210 - ECD_02575 0.58 -0.2 2,690,210 - ECD_02575 0.58 -0.4 2,690,210 - ECD_02575 0.58 -0.1 2,690,210 - ECD_02575 0.58 +0.5 2,690,210 - ECD_02575 0.58 +0.3 2,690,210 - ECD_02575 0.58 -1.0 2,690,210 - ECD_02575 0.58 +0.7 2,690,210 - ECD_02575 0.58 -1.1 2,690,210 - ECD_02575 0.58 +1.3 2,690,210 - ECD_02575 0.58 -0.7 2,690,323 + ECD_02575 0.83 -0.3 2,690,323 + ECD_02575 0.83 +0.1 2,690,324 - ECD_02575 0.83 +0.3 2,690,324 - ECD_02575 0.83 -0.7 2,690,324 - ECD_02575 0.83 -0.3 2,690,324 - ECD_02575 0.83 -1.5 2,690,324 - ECD_02575 0.83 -2.0 2,690,324 - ECD_02575 0.83 -0.0 2,690,324 - ECD_02575 0.83 +0.2 2,690,343 + ECD_02575 0.87 +0.3 2,690,369 - +0.0 2,690,369 - +0.1 2,690,369 - +1.1 2,690,369 - -0.2 2,690,386 - +0.7 2,690,396 + +1.0 2,690,396 + +0.2 2,690,396 + -0.5 2,690,397 - -0.1 2,690,397 - +0.4 2,690,586 + -0.0 2,690,596 + +0.6 2,690,596 + -0.5 2,690,596 + +1.0 2,690,596 + +1.1 2,690,596 + +0.2 2,690,596 + +2.0 2,690,596 + +0.1 2,690,597 - +0.4 2,690,597 - +0.0 2,690,597 - -1.1 2,690,597 - -0.2 2,690,597 - -0.6 2,690,600 + +0.2 2,690,624 + +0.8 2,690,624 + -0.1 2,690,691 - ECD_02576 0.22 +0.0 2,690,691 - ECD_02576 0.22 +0.1 2,690,793 + ECD_02576 0.51 +0.9 2,690,793 + ECD_02576 0.51 -0.2 2,690,848 + ECD_02576 0.67 +0.9 2,690,848 + ECD_02576 0.67 +0.7 2,690,848 + ECD_02576 0.67 -0.7 2,690,848 + ECD_02576 0.67 -1.0 2,690,848 + ECD_02576 0.67 +0.0 2,690,848 + ECD_02576 0.67 +0.7 2,690,848 + ECD_02576 0.67 +0.9 2,690,848 + ECD_02576 0.67 +0.3 2,690,848 + ECD_02576 0.67 -0.0 2,690,848 + ECD_02576 0.67 -0.3 2,690,849 - ECD_02576 0.67 +2.5 2,690,930 + -0.8 2,690,931 - -0.6 2,690,946 - -2.2 2,690,946 - +0.8 2,690,951 + +0.3 2,690,951 + +0.9 2,690,951 + +0.1 2,690,951 + +2.6 2,690,951 + +0.7 2,690,951 + +0.2 2,690,952 - -0.3 2,690,952 - -0.5 2,690,952 - -0.9 2,690,973 + -0.1 2,690,973 + +0.1 2,690,973 + +1.0 2,690,973 + -0.1 2,690,974 - +0.7 2,690,974 - +0.1 2,690,974 - +1.3 2,690,974 - +0.3 2,690,974 - -0.3 2,690,974 - +0.3 2,691,004 + -0.1 2,691,004 + +1.0 2,691,004 + -0.1 2,691,004 + +2.1 2,691,004 + -0.3 2,691,004 + +0.3 2,691,004 + -1.3 2,691,005 - -0.7 2,691,005 - -0.4 2,691,005 - -1.4 2,691,005 - -0.1 2,691,005 - +0.4 2,691,005 - -0.4 2,691,005 - -2.3 2,691,005 - +0.1 2,691,005 - -0.4 2,691,025 - -0.5 2,691,025 - +1.7 2,691,045 + -0.9 2,691,096 + ECD_02577 0.15 -0.3 2,691,096 + ECD_02577 0.15 -1.0 2,691,145 + ECD_02577 0.20 +0.2 2,691,342 - ECD_02577 0.43 +0.5 2,691,375 + ECD_02577 0.47 +0.6 2,691,375 + ECD_02577 0.47 -0.2 2,691,376 - ECD_02577 0.47 -0.9 2,691,376 - ECD_02577 0.47 -0.9 2,691,457 - ECD_02577 0.56 +0.1 2,691,525 + ECD_02577 0.64 -0.4 2,691,525 + ECD_02577 0.64 -1.3 2,691,526 - ECD_02577 0.64 -0.9 2,691,557 + ECD_02577 0.67 -0.0 2,691,557 + ECD_02577 0.67 -0.5 2,691,558 - ECD_02577 0.68 -0.8 2,691,558 - ECD_02577 0.68 -0.1 2,691,640 + ECD_02577 0.77 +0.7 2,691,648 + ECD_02577 0.78 +0.3 2,691,648 + ECD_02577 0.78 +2.0 2,691,648 + ECD_02577 0.78 -0.4 2,691,648 + ECD_02577 0.78 +0.1 2,691,649 - ECD_02577 0.78 +1.1 2,691,649 - ECD_02577 0.78 +0.5 2,691,649 - ECD_02577 0.78 -0.1 2,691,700 + ECD_02577 0.84 +1.1 2,691,700 + ECD_02577 0.84 -0.9 2,691,771 + +0.3 2,691,771 + +0.6 2,691,771 + +1.7 2,691,771 + -0.2 2,691,772 - -0.4 2,691,838 + +0.3 2,691,839 - +0.7 2,691,839 - +0.0 2,691,839 - +0.1 2,691,839 - -0.2 2,691,919 + ECD_02578 0.32 +0.3 2,691,919 + ECD_02578 0.32 -0.8 2,691,919 + ECD_02578 0.32 -0.4 2,691,919 + ECD_02578 0.32 +1.2 2,691,919 + ECD_02578 0.32 -0.1 2,691,919 + ECD_02578 0.32 +0.5 2,691,919 + ECD_02578 0.32 -0.3 2,691,920 - ECD_02578 0.33 +1.1 2,691,920 - ECD_02578 0.33 -0.4 2,691,920 - ECD_02578 0.33 -1.7
Or see this region's nucleotide sequence