Strain Fitness in Escherichia coli BL21 around ECD_02576

Experiment: Laval1267

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02574 and ECD_02575 are separated by 124 nucleotidesECD_02575 and ECD_02576 are separated by 211 nucleotidesECD_02576 and ECD_02577 are separated by 3 nucleotidesECD_02577 and ECD_02578 overlap by 10 nucleotides ECD_02574: ECD_02574 - hydrogenase 3, Fe-S subunit, at 2,689,205 to 2,689,816 _02574 ECD_02575: ECD_02575 - regulator of the transcriptional regulator FhlA, at 2,689,941 to 2,690,402 _02575 ECD_02576: ECD_02576 - protein involved in nickel insertion into hydrogenases 3, at 2,690,614 to 2,690,964 _02576 ECD_02577: ECD_02577 - GTP hydrolase, at 2,690,968 to 2,691,840 _02577 ECD_02578: ECD_02578 - hydrogenase maturation protein, at 2,691,831 to 2,692,103 _02578 Position (kb) 2690 2691Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2689.803 kb on - strandat 2689.803 kb on - strandat 2689.912 kb on - strandat 2689.912 kb on - strandat 2690.003 kb on + strand, within ECD_02575at 2690.011 kb on + strand, within ECD_02575at 2690.011 kb on + strand, within ECD_02575at 2690.011 kb on + strand, within ECD_02575at 2690.011 kb on + strand, within ECD_02575at 2690.011 kb on + strand, within ECD_02575at 2690.011 kb on + strand, within ECD_02575at 2690.011 kb on + strand, within ECD_02575at 2690.012 kb on - strand, within ECD_02575at 2690.012 kb on - strand, within ECD_02575at 2690.012 kb on - strand, within ECD_02575at 2690.012 kb on - strand, within ECD_02575at 2690.012 kb on - strand, within ECD_02575at 2690.012 kb on - strand, within ECD_02575at 2690.012 kb on - strand, within ECD_02575at 2690.012 kb on - strand, within ECD_02575at 2690.012 kb on - strand, within ECD_02575at 2690.012 kb on - strand, within ECD_02575at 2690.013 kb on + strand, within ECD_02575at 2690.013 kb on + strand, within ECD_02575at 2690.013 kb on + strand, within ECD_02575at 2690.013 kb on + strand, within ECD_02575at 2690.013 kb on + strand, within ECD_02575at 2690.013 kb on + strand, within ECD_02575at 2690.014 kb on - strand, within ECD_02575at 2690.014 kb on - strand, within ECD_02575at 2690.014 kb on - strand, within ECD_02575at 2690.014 kb on - strand, within ECD_02575at 2690.014 kb on - strand, within ECD_02575at 2690.014 kb on - strand, within ECD_02575at 2690.014 kb on - strand, within ECD_02575at 2690.014 kb on - strand, within ECD_02575at 2690.014 kb on - strand, within ECD_02575at 2690.014 kb on - strand, within ECD_02575at 2690.023 kb on + strand, within ECD_02575at 2690.047 kb on + strand, within ECD_02575at 2690.047 kb on + strand, within ECD_02575at 2690.047 kb on + strand, within ECD_02575at 2690.047 kb on + strand, within ECD_02575at 2690.047 kb on + strand, within ECD_02575at 2690.048 kb on - strand, within ECD_02575at 2690.048 kb on - strand, within ECD_02575at 2690.048 kb on - strand, within ECD_02575at 2690.048 kb on - strand, within ECD_02575at 2690.048 kb on - strand, within ECD_02575at 2690.048 kb on - strand, within ECD_02575at 2690.164 kb on + strand, within ECD_02575at 2690.164 kb on + strand, within ECD_02575at 2690.165 kb on - strand, within ECD_02575at 2690.165 kb on - strand, within ECD_02575at 2690.165 kb on - strand, within ECD_02575at 2690.165 kb on - strand, within ECD_02575at 2690.165 kb on - strand, within ECD_02575at 2690.165 kb on - strand, within ECD_02575at 2690.165 kb on - strand, within ECD_02575at 2690.165 kb on - strand, within ECD_02575at 2690.167 kb on + strand, within ECD_02575at 2690.167 kb on + strand, within ECD_02575at 2690.168 kb on - strand, within ECD_02575at 2690.168 kb on - strand, within ECD_02575at 2690.179 kb on - strand, within ECD_02575at 2690.187 kb on - strand, within ECD_02575at 2690.209 kb on + strand, within ECD_02575at 2690.209 kb on + strand, within ECD_02575at 2690.209 kb on + strand, within ECD_02575at 2690.210 kb on - strand, within ECD_02575at 2690.210 kb on - strand, within ECD_02575at 2690.210 kb on - strand, within ECD_02575at 2690.210 kb on - strand, within ECD_02575at 2690.210 kb on - strand, within ECD_02575at 2690.210 kb on - strand, within ECD_02575at 2690.210 kb on - strand, within ECD_02575at 2690.210 kb on - strand, within ECD_02575at 2690.210 kb on - strand, within ECD_02575at 2690.210 kb on - strand, within ECD_02575at 2690.323 kb on + strand, within ECD_02575at 2690.323 kb on + strand, within ECD_02575at 2690.324 kb on - strand, within ECD_02575at 2690.324 kb on - strand, within ECD_02575at 2690.324 kb on - strand, within ECD_02575at 2690.324 kb on - strand, within ECD_02575at 2690.324 kb on - strand, within ECD_02575at 2690.324 kb on - strand, within ECD_02575at 2690.324 kb on - strand, within ECD_02575at 2690.343 kb on + strand, within ECD_02575at 2690.369 kb on - strandat 2690.369 kb on - strandat 2690.369 kb on - strandat 2690.369 kb on - strandat 2690.386 kb on - strandat 2690.396 kb on + strandat 2690.396 kb on + strandat 2690.396 kb on + strandat 2690.397 kb on - strandat 2690.397 kb on - strandat 2690.586 kb on + strandat 2690.596 kb on + strandat 2690.596 kb on + strandat 2690.596 kb on + strandat 2690.596 kb on + strandat 2690.596 kb on + strandat 2690.596 kb on + strandat 2690.596 kb on + strandat 2690.597 kb on - strandat 2690.597 kb on - strandat 2690.597 kb on - strandat 2690.597 kb on - strandat 2690.597 kb on - strandat 2690.600 kb on + strandat 2690.624 kb on + strandat 2690.624 kb on + strandat 2690.691 kb on - strand, within ECD_02576at 2690.691 kb on - strand, within ECD_02576at 2690.793 kb on + strand, within ECD_02576at 2690.793 kb on + strand, within ECD_02576at 2690.848 kb on + strand, within ECD_02576at 2690.848 kb on + strand, within ECD_02576at 2690.848 kb on + strand, within ECD_02576at 2690.848 kb on + strand, within ECD_02576at 2690.848 kb on + strand, within ECD_02576at 2690.848 kb on + strand, within ECD_02576at 2690.848 kb on + strand, within ECD_02576at 2690.848 kb on + strand, within ECD_02576at 2690.848 kb on + strand, within ECD_02576at 2690.848 kb on + strand, within ECD_02576at 2690.849 kb on - strand, within ECD_02576at 2690.930 kb on + strandat 2690.931 kb on - strandat 2690.946 kb on - strandat 2690.946 kb on - strandat 2690.951 kb on + strandat 2690.951 kb on + strandat 2690.951 kb on + strandat 2690.951 kb on + strandat 2690.951 kb on + strandat 2690.951 kb on + strandat 2690.952 kb on - strandat 2690.952 kb on - strandat 2690.952 kb on - strandat 2690.973 kb on + strandat 2690.973 kb on + strandat 2690.973 kb on + strandat 2690.973 kb on + strandat 2690.974 kb on - strandat 2690.974 kb on - strandat 2690.974 kb on - strandat 2690.974 kb on - strandat 2690.974 kb on - strandat 2690.974 kb on - strandat 2691.004 kb on + strandat 2691.004 kb on + strandat 2691.004 kb on + strandat 2691.004 kb on + strandat 2691.004 kb on + strandat 2691.004 kb on + strandat 2691.004 kb on + strandat 2691.005 kb on - strandat 2691.005 kb on - strandat 2691.005 kb on - strandat 2691.005 kb on - strandat 2691.005 kb on - strandat 2691.005 kb on - strandat 2691.005 kb on - strandat 2691.005 kb on - strandat 2691.005 kb on - strandat 2691.025 kb on - strandat 2691.025 kb on - strandat 2691.045 kb on + strandat 2691.096 kb on + strand, within ECD_02577at 2691.096 kb on + strand, within ECD_02577at 2691.145 kb on + strand, within ECD_02577at 2691.342 kb on - strand, within ECD_02577at 2691.375 kb on + strand, within ECD_02577at 2691.375 kb on + strand, within ECD_02577at 2691.376 kb on - strand, within ECD_02577at 2691.376 kb on - strand, within ECD_02577at 2691.457 kb on - strand, within ECD_02577at 2691.525 kb on + strand, within ECD_02577at 2691.525 kb on + strand, within ECD_02577at 2691.526 kb on - strand, within ECD_02577at 2691.557 kb on + strand, within ECD_02577at 2691.557 kb on + strand, within ECD_02577at 2691.558 kb on - strand, within ECD_02577at 2691.558 kb on - strand, within ECD_02577at 2691.640 kb on + strand, within ECD_02577at 2691.648 kb on + strand, within ECD_02577at 2691.648 kb on + strand, within ECD_02577at 2691.648 kb on + strand, within ECD_02577at 2691.648 kb on + strand, within ECD_02577at 2691.649 kb on - strand, within ECD_02577at 2691.649 kb on - strand, within ECD_02577at 2691.649 kb on - strand, within ECD_02577at 2691.700 kb on + strand, within ECD_02577at 2691.700 kb on + strand, within ECD_02577at 2691.771 kb on + strandat 2691.771 kb on + strandat 2691.771 kb on + strandat 2691.771 kb on + strandat 2691.772 kb on - strandat 2691.838 kb on + strandat 2691.839 kb on - strandat 2691.839 kb on - strandat 2691.839 kb on - strandat 2691.839 kb on - strandat 2691.919 kb on + strand, within ECD_02578at 2691.919 kb on + strand, within ECD_02578at 2691.919 kb on + strand, within ECD_02578at 2691.919 kb on + strand, within ECD_02578at 2691.919 kb on + strand, within ECD_02578at 2691.919 kb on + strand, within ECD_02578at 2691.919 kb on + strand, within ECD_02578at 2691.920 kb on - strand, within ECD_02578at 2691.920 kb on - strand, within ECD_02578at 2691.920 kb on - strand, within ECD_02578

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1267
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2,689,803 - +1.1
2,689,803 - +0.2
2,689,912 - -1.1
2,689,912 - +0.7
2,690,003 + ECD_02575 0.13 +0.8
2,690,011 + ECD_02575 0.15 +0.1
2,690,011 + ECD_02575 0.15 +0.1
2,690,011 + ECD_02575 0.15 -0.4
2,690,011 + ECD_02575 0.15 +0.3
2,690,011 + ECD_02575 0.15 +3.0
2,690,011 + ECD_02575 0.15 +0.9
2,690,011 + ECD_02575 0.15 +0.6
2,690,012 - ECD_02575 0.15 -0.7
2,690,012 - ECD_02575 0.15 -0.6
2,690,012 - ECD_02575 0.15 +0.4
2,690,012 - ECD_02575 0.15 -0.8
2,690,012 - ECD_02575 0.15 -0.3
2,690,012 - ECD_02575 0.15 +0.2
2,690,012 - ECD_02575 0.15 +0.3
2,690,012 - ECD_02575 0.15 -0.3
2,690,012 - ECD_02575 0.15 +0.6
2,690,012 - ECD_02575 0.15 -0.0
2,690,013 + ECD_02575 0.16 +1.2
2,690,013 + ECD_02575 0.16 +0.7
2,690,013 + ECD_02575 0.16 +0.5
2,690,013 + ECD_02575 0.16 +0.8
2,690,013 + ECD_02575 0.16 -0.6
2,690,013 + ECD_02575 0.16 -0.9
2,690,014 - ECD_02575 0.16 +0.8
2,690,014 - ECD_02575 0.16 +0.1
2,690,014 - ECD_02575 0.16 +1.3
2,690,014 - ECD_02575 0.16 -0.6
2,690,014 - ECD_02575 0.16 +0.5
2,690,014 - ECD_02575 0.16 +1.1
2,690,014 - ECD_02575 0.16 -1.0
2,690,014 - ECD_02575 0.16 +0.6
2,690,014 - ECD_02575 0.16 +0.4
2,690,014 - ECD_02575 0.16 -0.4
2,690,023 + ECD_02575 0.18 -0.4
2,690,047 + ECD_02575 0.23 -0.5
2,690,047 + ECD_02575 0.23 +1.6
2,690,047 + ECD_02575 0.23 -0.9
2,690,047 + ECD_02575 0.23 +0.3
2,690,047 + ECD_02575 0.23 -0.1
2,690,048 - ECD_02575 0.23 +0.0
2,690,048 - ECD_02575 0.23 +1.0
2,690,048 - ECD_02575 0.23 +0.0
2,690,048 - ECD_02575 0.23 +0.5
2,690,048 - ECD_02575 0.23 +0.9
2,690,048 - ECD_02575 0.23 -0.3
2,690,164 + ECD_02575 0.48 +1.1
2,690,164 + ECD_02575 0.48 -0.0
2,690,165 - ECD_02575 0.48 +1.0
2,690,165 - ECD_02575 0.48 +0.3
2,690,165 - ECD_02575 0.48 -0.0
2,690,165 - ECD_02575 0.48 -0.2
2,690,165 - ECD_02575 0.48 +0.0
2,690,165 - ECD_02575 0.48 +0.9
2,690,165 - ECD_02575 0.48 -0.8
2,690,165 - ECD_02575 0.48 -0.1
2,690,167 + ECD_02575 0.49 -0.3
2,690,167 + ECD_02575 0.49 +0.2
2,690,168 - ECD_02575 0.49 +1.0
2,690,168 - ECD_02575 0.49 -0.4
2,690,179 - ECD_02575 0.52 -0.4
2,690,187 - ECD_02575 0.53 +0.2
2,690,209 + ECD_02575 0.58 +0.4
2,690,209 + ECD_02575 0.58 -1.1
2,690,209 + ECD_02575 0.58 +1.6
2,690,210 - ECD_02575 0.58 -0.2
2,690,210 - ECD_02575 0.58 -0.4
2,690,210 - ECD_02575 0.58 -0.1
2,690,210 - ECD_02575 0.58 +0.5
2,690,210 - ECD_02575 0.58 +0.3
2,690,210 - ECD_02575 0.58 -1.0
2,690,210 - ECD_02575 0.58 +0.7
2,690,210 - ECD_02575 0.58 -1.1
2,690,210 - ECD_02575 0.58 +1.3
2,690,210 - ECD_02575 0.58 -0.7
2,690,323 + ECD_02575 0.83 -0.3
2,690,323 + ECD_02575 0.83 +0.1
2,690,324 - ECD_02575 0.83 +0.3
2,690,324 - ECD_02575 0.83 -0.7
2,690,324 - ECD_02575 0.83 -0.3
2,690,324 - ECD_02575 0.83 -1.5
2,690,324 - ECD_02575 0.83 -2.0
2,690,324 - ECD_02575 0.83 -0.0
2,690,324 - ECD_02575 0.83 +0.2
2,690,343 + ECD_02575 0.87 +0.3
2,690,369 - +0.0
2,690,369 - +0.1
2,690,369 - +1.1
2,690,369 - -0.2
2,690,386 - +0.7
2,690,396 + +1.0
2,690,396 + +0.2
2,690,396 + -0.5
2,690,397 - -0.1
2,690,397 - +0.4
2,690,586 + -0.0
2,690,596 + +0.6
2,690,596 + -0.5
2,690,596 + +1.0
2,690,596 + +1.1
2,690,596 + +0.2
2,690,596 + +2.0
2,690,596 + +0.1
2,690,597 - +0.4
2,690,597 - +0.0
2,690,597 - -1.1
2,690,597 - -0.2
2,690,597 - -0.6
2,690,600 + +0.2
2,690,624 + +0.8
2,690,624 + -0.1
2,690,691 - ECD_02576 0.22 +0.0
2,690,691 - ECD_02576 0.22 +0.1
2,690,793 + ECD_02576 0.51 +0.9
2,690,793 + ECD_02576 0.51 -0.2
2,690,848 + ECD_02576 0.67 +0.9
2,690,848 + ECD_02576 0.67 +0.7
2,690,848 + ECD_02576 0.67 -0.7
2,690,848 + ECD_02576 0.67 -1.0
2,690,848 + ECD_02576 0.67 +0.0
2,690,848 + ECD_02576 0.67 +0.7
2,690,848 + ECD_02576 0.67 +0.9
2,690,848 + ECD_02576 0.67 +0.3
2,690,848 + ECD_02576 0.67 -0.0
2,690,848 + ECD_02576 0.67 -0.3
2,690,849 - ECD_02576 0.67 +2.5
2,690,930 + -0.8
2,690,931 - -0.6
2,690,946 - -2.2
2,690,946 - +0.8
2,690,951 + +0.3
2,690,951 + +0.9
2,690,951 + +0.1
2,690,951 + +2.6
2,690,951 + +0.7
2,690,951 + +0.2
2,690,952 - -0.3
2,690,952 - -0.5
2,690,952 - -0.9
2,690,973 + -0.1
2,690,973 + +0.1
2,690,973 + +1.0
2,690,973 + -0.1
2,690,974 - +0.7
2,690,974 - +0.1
2,690,974 - +1.3
2,690,974 - +0.3
2,690,974 - -0.3
2,690,974 - +0.3
2,691,004 + -0.1
2,691,004 + +1.0
2,691,004 + -0.1
2,691,004 + +2.1
2,691,004 + -0.3
2,691,004 + +0.3
2,691,004 + -1.3
2,691,005 - -0.7
2,691,005 - -0.4
2,691,005 - -1.4
2,691,005 - -0.1
2,691,005 - +0.4
2,691,005 - -0.4
2,691,005 - -2.3
2,691,005 - +0.1
2,691,005 - -0.4
2,691,025 - -0.5
2,691,025 - +1.7
2,691,045 + -0.9
2,691,096 + ECD_02577 0.15 -0.3
2,691,096 + ECD_02577 0.15 -1.0
2,691,145 + ECD_02577 0.20 +0.2
2,691,342 - ECD_02577 0.43 +0.5
2,691,375 + ECD_02577 0.47 +0.6
2,691,375 + ECD_02577 0.47 -0.2
2,691,376 - ECD_02577 0.47 -0.9
2,691,376 - ECD_02577 0.47 -0.9
2,691,457 - ECD_02577 0.56 +0.1
2,691,525 + ECD_02577 0.64 -0.4
2,691,525 + ECD_02577 0.64 -1.3
2,691,526 - ECD_02577 0.64 -0.9
2,691,557 + ECD_02577 0.67 -0.0
2,691,557 + ECD_02577 0.67 -0.5
2,691,558 - ECD_02577 0.68 -0.8
2,691,558 - ECD_02577 0.68 -0.1
2,691,640 + ECD_02577 0.77 +0.7
2,691,648 + ECD_02577 0.78 +0.3
2,691,648 + ECD_02577 0.78 +2.0
2,691,648 + ECD_02577 0.78 -0.4
2,691,648 + ECD_02577 0.78 +0.1
2,691,649 - ECD_02577 0.78 +1.1
2,691,649 - ECD_02577 0.78 +0.5
2,691,649 - ECD_02577 0.78 -0.1
2,691,700 + ECD_02577 0.84 +1.1
2,691,700 + ECD_02577 0.84 -0.9
2,691,771 + +0.3
2,691,771 + +0.6
2,691,771 + +1.7
2,691,771 + -0.2
2,691,772 - -0.4
2,691,838 + +0.3
2,691,839 - +0.7
2,691,839 - +0.0
2,691,839 - +0.1
2,691,839 - -0.2
2,691,919 + ECD_02578 0.32 +0.3
2,691,919 + ECD_02578 0.32 -0.8
2,691,919 + ECD_02578 0.32 -0.4
2,691,919 + ECD_02578 0.32 +1.2
2,691,919 + ECD_02578 0.32 -0.1
2,691,919 + ECD_02578 0.32 +0.5
2,691,919 + ECD_02578 0.32 -0.3
2,691,920 - ECD_02578 0.33 +1.1
2,691,920 - ECD_02578 0.33 -0.4
2,691,920 - ECD_02578 0.33 -1.7

Or see this region's nucleotide sequence