Strain Fitness in Escherichia coli BL21 around ECD_02486

Experiment: Laval1267

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02485 and ECD_02486 are separated by 270 nucleotidesECD_02486 and ECD_02487 are separated by 103 nucleotidesECD_02487 and ECD_02488 are separated by 97 nucleotides ECD_02485: ECD_02485 - BamABCDE complex OM biogenesis lipoprotein, at 2,602,661 to 2,603,398 _02485 ECD_02486: ECD_02486 - cold shock protein associated with 30S ribosomal subunit, at 2,603,669 to 2,604,010 _02486 ECD_02487: ECD_02487 - pheA gene leader peptide, at 2,604,114 to 2,604,161 _02487 ECD_02488: ECD_02488 - chorismate mutase and prephenate dehydratase, P-protein, at 2,604,259 to 2,605,419 _02488 Position (kb) 2603 2604 2605Strain fitness (log2 ratio) -2 -1 0 1at 2603.392 kb on + strandat 2603.392 kb on + strandat 2603.392 kb on + strandat 2603.392 kb on + strandat 2603.392 kb on + strandat 2603.392 kb on + strandat 2603.392 kb on + strandat 2603.392 kb on + strandat 2603.393 kb on - strandat 2603.476 kb on - strandat 2603.774 kb on - strand, within ECD_02486at 2603.782 kb on + strand, within ECD_02486at 2603.782 kb on + strand, within ECD_02486at 2603.782 kb on + strand, within ECD_02486at 2603.782 kb on + strand, within ECD_02486at 2603.782 kb on + strand, within ECD_02486at 2603.782 kb on + strand, within ECD_02486at 2603.782 kb on + strand, within ECD_02486at 2603.782 kb on + strand, within ECD_02486at 2603.834 kb on - strand, within ECD_02486at 2603.834 kb on - strand, within ECD_02486at 2603.839 kb on + strand, within ECD_02486at 2603.839 kb on + strand, within ECD_02486at 2603.875 kb on + strand, within ECD_02486at 2603.875 kb on + strand, within ECD_02486at 2603.875 kb on + strand, within ECD_02486at 2603.875 kb on + strand, within ECD_02486at 2603.875 kb on + strand, within ECD_02486at 2603.876 kb on - strand, within ECD_02486at 2603.876 kb on - strand, within ECD_02486at 2603.879 kb on + strand, within ECD_02486at 2603.879 kb on + strand, within ECD_02486at 2603.880 kb on - strand, within ECD_02486at 2603.880 kb on - strand, within ECD_02486at 2603.926 kb on + strand, within ECD_02486at 2603.926 kb on + strand, within ECD_02486at 2604.008 kb on + strandat 2604.009 kb on - strandat 2604.016 kb on + strandat 2604.016 kb on + strandat 2604.016 kb on + strandat 2604.016 kb on + strandat 2604.016 kb on + strandat 2604.016 kb on + strandat 2604.017 kb on - strandat 2604.017 kb on - strandat 2604.017 kb on - strandat 2604.089 kb on - strandat 2604.092 kb on - strandat 2604.207 kb on + strandat 2604.208 kb on - strandat 2604.236 kb on - strandat 2604.258 kb on + strandat 2604.403 kb on - strand, within ECD_02488at 2604.423 kb on - strand, within ECD_02488at 2604.435 kb on - strand, within ECD_02488at 2604.439 kb on - strand, within ECD_02488at 2604.472 kb on + strand, within ECD_02488at 2604.767 kb on - strand, within ECD_02488at 2604.767 kb on - strand, within ECD_02488at 2604.784 kb on - strand, within ECD_02488at 2604.784 kb on - strand, within ECD_02488at 2604.784 kb on - strand, within ECD_02488at 2604.820 kb on - strand, within ECD_02488at 2604.877 kb on + strand, within ECD_02488at 2604.878 kb on - strand, within ECD_02488at 2604.878 kb on - strand, within ECD_02488at 2604.946 kb on + strand, within ECD_02488at 2604.946 kb on + strand, within ECD_02488at 2604.948 kb on + strand, within ECD_02488at 2604.958 kb on - strand, within ECD_02488

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1267
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2,603,392 + -0.0
2,603,392 + +0.8
2,603,392 + -1.0
2,603,392 + +0.7
2,603,392 + -1.0
2,603,392 + +0.2
2,603,392 + -0.4
2,603,392 + +1.7
2,603,393 - +0.4
2,603,476 - +0.3
2,603,774 - ECD_02486 0.31 -1.0
2,603,782 + ECD_02486 0.33 -1.4
2,603,782 + ECD_02486 0.33 +0.0
2,603,782 + ECD_02486 0.33 +0.5
2,603,782 + ECD_02486 0.33 +0.0
2,603,782 + ECD_02486 0.33 -0.3
2,603,782 + ECD_02486 0.33 -0.2
2,603,782 + ECD_02486 0.33 -1.2
2,603,782 + ECD_02486 0.33 -2.0
2,603,834 - ECD_02486 0.48 -0.2
2,603,834 - ECD_02486 0.48 -1.1
2,603,839 + ECD_02486 0.50 -0.1
2,603,839 + ECD_02486 0.50 -0.2
2,603,875 + ECD_02486 0.60 -0.2
2,603,875 + ECD_02486 0.60 +0.1
2,603,875 + ECD_02486 0.60 +0.0
2,603,875 + ECD_02486 0.60 -1.1
2,603,875 + ECD_02486 0.60 -0.6
2,603,876 - ECD_02486 0.61 +0.3
2,603,876 - ECD_02486 0.61 +0.8
2,603,879 + ECD_02486 0.61 -1.4
2,603,879 + ECD_02486 0.61 -0.3
2,603,880 - ECD_02486 0.62 -0.2
2,603,880 - ECD_02486 0.62 -0.5
2,603,926 + ECD_02486 0.75 +0.2
2,603,926 + ECD_02486 0.75 -0.9
2,604,008 + +1.4
2,604,009 - -0.5
2,604,016 + +0.4
2,604,016 + +0.2
2,604,016 + -0.6
2,604,016 + +0.1
2,604,016 + -0.7
2,604,016 + -0.7
2,604,017 - -0.6
2,604,017 - +0.5
2,604,017 - -0.5
2,604,089 - +0.2
2,604,092 - -1.4
2,604,207 + -0.2
2,604,208 - +1.4
2,604,236 - +0.4
2,604,258 + -0.1
2,604,403 - ECD_02488 0.12 -0.1
2,604,423 - ECD_02488 0.14 -0.6
2,604,435 - ECD_02488 0.15 -0.3
2,604,439 - ECD_02488 0.16 -0.2
2,604,472 + ECD_02488 0.18 -0.1
2,604,767 - ECD_02488 0.44 -1.2
2,604,767 - ECD_02488 0.44 -1.2
2,604,784 - ECD_02488 0.45 -0.2
2,604,784 - ECD_02488 0.45 +0.9
2,604,784 - ECD_02488 0.45 +0.8
2,604,820 - ECD_02488 0.48 -0.4
2,604,877 + ECD_02488 0.53 -1.2
2,604,878 - ECD_02488 0.53 -0.3
2,604,878 - ECD_02488 0.53 -0.4
2,604,946 + ECD_02488 0.59 -0.0
2,604,946 + ECD_02488 0.59 +0.4
2,604,948 + ECD_02488 0.59 +0.1
2,604,958 - ECD_02488 0.60 -0.8

Or see this region's nucleotide sequence