Experiment: Laval1267
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02485 and ECD_02486 are separated by 270 nucleotides ECD_02486 and ECD_02487 are separated by 103 nucleotides ECD_02487 and ECD_02488 are separated by 97 nucleotides
ECD_02485: ECD_02485 - BamABCDE complex OM biogenesis lipoprotein, at 2,602,661 to 2,603,398
_02485
ECD_02486: ECD_02486 - cold shock protein associated with 30S ribosomal subunit, at 2,603,669 to 2,604,010
_02486
ECD_02487: ECD_02487 - pheA gene leader peptide, at 2,604,114 to 2,604,161
_02487
ECD_02488: ECD_02488 - chorismate mutase and prephenate dehydratase, P-protein, at 2,604,259 to 2,605,419
_02488
Position (kb)
2603
2604
2605 Strain fitness (log2 ratio)
-2
-1
0
1 at 2603.392 kb on + strand at 2603.392 kb on + strand at 2603.392 kb on + strand at 2603.392 kb on + strand at 2603.392 kb on + strand at 2603.392 kb on + strand at 2603.392 kb on + strand at 2603.392 kb on + strand at 2603.393 kb on - strand at 2603.476 kb on - strand at 2603.774 kb on - strand, within ECD_02486 at 2603.782 kb on + strand, within ECD_02486 at 2603.782 kb on + strand, within ECD_02486 at 2603.782 kb on + strand, within ECD_02486 at 2603.782 kb on + strand, within ECD_02486 at 2603.782 kb on + strand, within ECD_02486 at 2603.782 kb on + strand, within ECD_02486 at 2603.782 kb on + strand, within ECD_02486 at 2603.782 kb on + strand, within ECD_02486 at 2603.834 kb on - strand, within ECD_02486 at 2603.834 kb on - strand, within ECD_02486 at 2603.839 kb on + strand, within ECD_02486 at 2603.839 kb on + strand, within ECD_02486 at 2603.875 kb on + strand, within ECD_02486 at 2603.875 kb on + strand, within ECD_02486 at 2603.875 kb on + strand, within ECD_02486 at 2603.875 kb on + strand, within ECD_02486 at 2603.875 kb on + strand, within ECD_02486 at 2603.876 kb on - strand, within ECD_02486 at 2603.876 kb on - strand, within ECD_02486 at 2603.879 kb on + strand, within ECD_02486 at 2603.879 kb on + strand, within ECD_02486 at 2603.880 kb on - strand, within ECD_02486 at 2603.880 kb on - strand, within ECD_02486 at 2603.926 kb on + strand, within ECD_02486 at 2603.926 kb on + strand, within ECD_02486 at 2604.008 kb on + strand at 2604.009 kb on - strand at 2604.016 kb on + strand at 2604.016 kb on + strand at 2604.016 kb on + strand at 2604.016 kb on + strand at 2604.016 kb on + strand at 2604.016 kb on + strand at 2604.017 kb on - strand at 2604.017 kb on - strand at 2604.017 kb on - strand at 2604.089 kb on - strand at 2604.092 kb on - strand at 2604.207 kb on + strand at 2604.208 kb on - strand at 2604.236 kb on - strand at 2604.258 kb on + strand at 2604.403 kb on - strand, within ECD_02488 at 2604.423 kb on - strand, within ECD_02488 at 2604.435 kb on - strand, within ECD_02488 at 2604.439 kb on - strand, within ECD_02488 at 2604.472 kb on + strand, within ECD_02488 at 2604.767 kb on - strand, within ECD_02488 at 2604.767 kb on - strand, within ECD_02488 at 2604.784 kb on - strand, within ECD_02488 at 2604.784 kb on - strand, within ECD_02488 at 2604.784 kb on - strand, within ECD_02488 at 2604.820 kb on - strand, within ECD_02488 at 2604.877 kb on + strand, within ECD_02488 at 2604.878 kb on - strand, within ECD_02488 at 2604.878 kb on - strand, within ECD_02488 at 2604.946 kb on + strand, within ECD_02488 at 2604.946 kb on + strand, within ECD_02488 at 2604.948 kb on + strand, within ECD_02488 at 2604.958 kb on - strand, within ECD_02488
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1267 remove 2,603,392 + -0.0 2,603,392 + +0.8 2,603,392 + -1.0 2,603,392 + +0.7 2,603,392 + -1.0 2,603,392 + +0.2 2,603,392 + -0.4 2,603,392 + +1.7 2,603,393 - +0.4 2,603,476 - +0.3 2,603,774 - ECD_02486 0.31 -1.0 2,603,782 + ECD_02486 0.33 -1.4 2,603,782 + ECD_02486 0.33 +0.0 2,603,782 + ECD_02486 0.33 +0.5 2,603,782 + ECD_02486 0.33 +0.0 2,603,782 + ECD_02486 0.33 -0.3 2,603,782 + ECD_02486 0.33 -0.2 2,603,782 + ECD_02486 0.33 -1.2 2,603,782 + ECD_02486 0.33 -2.0 2,603,834 - ECD_02486 0.48 -0.2 2,603,834 - ECD_02486 0.48 -1.1 2,603,839 + ECD_02486 0.50 -0.1 2,603,839 + ECD_02486 0.50 -0.2 2,603,875 + ECD_02486 0.60 -0.2 2,603,875 + ECD_02486 0.60 +0.1 2,603,875 + ECD_02486 0.60 +0.0 2,603,875 + ECD_02486 0.60 -1.1 2,603,875 + ECD_02486 0.60 -0.6 2,603,876 - ECD_02486 0.61 +0.3 2,603,876 - ECD_02486 0.61 +0.8 2,603,879 + ECD_02486 0.61 -1.4 2,603,879 + ECD_02486 0.61 -0.3 2,603,880 - ECD_02486 0.62 -0.2 2,603,880 - ECD_02486 0.62 -0.5 2,603,926 + ECD_02486 0.75 +0.2 2,603,926 + ECD_02486 0.75 -0.9 2,604,008 + +1.4 2,604,009 - -0.5 2,604,016 + +0.4 2,604,016 + +0.2 2,604,016 + -0.6 2,604,016 + +0.1 2,604,016 + -0.7 2,604,016 + -0.7 2,604,017 - -0.6 2,604,017 - +0.5 2,604,017 - -0.5 2,604,089 - +0.2 2,604,092 - -1.4 2,604,207 + -0.2 2,604,208 - +1.4 2,604,236 - +0.4 2,604,258 + -0.1 2,604,403 - ECD_02488 0.12 -0.1 2,604,423 - ECD_02488 0.14 -0.6 2,604,435 - ECD_02488 0.15 -0.3 2,604,439 - ECD_02488 0.16 -0.2 2,604,472 + ECD_02488 0.18 -0.1 2,604,767 - ECD_02488 0.44 -1.2 2,604,767 - ECD_02488 0.44 -1.2 2,604,784 - ECD_02488 0.45 -0.2 2,604,784 - ECD_02488 0.45 +0.9 2,604,784 - ECD_02488 0.45 +0.8 2,604,820 - ECD_02488 0.48 -0.4 2,604,877 + ECD_02488 0.53 -1.2 2,604,878 - ECD_02488 0.53 -0.3 2,604,878 - ECD_02488 0.53 -0.4 2,604,946 + ECD_02488 0.59 -0.0 2,604,946 + ECD_02488 0.59 +0.4 2,604,948 + ECD_02488 0.59 +0.1 2,604,958 - ECD_02488 0.60 -0.8
Or see this region's nucleotide sequence