Strain Fitness in Escherichia coli BL21 around ECD_02470

Experiment: Laval1267

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02468 and ECD_02469 overlap by 16 nucleotidesECD_02469 and ECD_02470 are separated by 131 nucleotidesECD_02470 and ECD_02471 are separated by 208 nucleotides ECD_02468: ECD_02468 - quinolinate synthase, L-aspartate oxidase (B protein) subunit, at 2,577,020 to 2,578,642 _02468 ECD_02469: ECD_02469 - tRNA1(Val) (adenine(37)-N6)-methyltransferase, at 2,578,627 to 2,579,364 _02469 ECD_02470: ECD_02470 - ATP-dependent RNA helicase, at 2,579,496 to 2,580,830 _02470 ECD_02471: ECD_02471 - putative DNA-binding transcriptional regulator, at 2,581,039 to 2,581,920 _02471 Position (kb) 2579 2580 2581Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2578.628 kb on + strandat 2578.629 kb on - strandat 2578.629 kb on - strandat 2578.629 kb on - strandat 2578.629 kb on - strandat 2578.629 kb on - strandat 2578.632 kb on + strandat 2578.632 kb on + strandat 2578.633 kb on - strandat 2578.641 kb on - strandat 2578.641 kb on - strandat 2578.801 kb on + strand, within ECD_02469at 2578.820 kb on - strand, within ECD_02469at 2578.843 kb on - strand, within ECD_02469at 2578.933 kb on - strand, within ECD_02469at 2578.938 kb on + strand, within ECD_02469at 2578.939 kb on - strand, within ECD_02469at 2578.939 kb on - strand, within ECD_02469at 2578.991 kb on + strand, within ECD_02469at 2578.991 kb on + strand, within ECD_02469at 2578.992 kb on - strand, within ECD_02469at 2578.992 kb on - strand, within ECD_02469at 2578.992 kb on - strand, within ECD_02469at 2578.992 kb on - strand, within ECD_02469at 2579.012 kb on - strand, within ECD_02469at 2579.024 kb on - strand, within ECD_02469at 2579.230 kb on + strand, within ECD_02469at 2579.265 kb on + strand, within ECD_02469at 2579.352 kb on + strandat 2579.353 kb on - strandat 2579.353 kb on - strandat 2579.490 kb on + strandat 2579.801 kb on + strand, within ECD_02470at 2579.841 kb on + strand, within ECD_02470at 2579.841 kb on + strand, within ECD_02470at 2579.841 kb on + strand, within ECD_02470at 2579.842 kb on - strand, within ECD_02470at 2579.844 kb on - strand, within ECD_02470at 2579.913 kb on + strand, within ECD_02470at 2579.913 kb on + strand, within ECD_02470at 2579.914 kb on - strand, within ECD_02470at 2579.914 kb on - strand, within ECD_02470at 2579.914 kb on - strand, within ECD_02470at 2579.978 kb on + strand, within ECD_02470at 2579.979 kb on - strand, within ECD_02470at 2580.014 kb on + strand, within ECD_02470at 2580.014 kb on + strand, within ECD_02470at 2580.324 kb on + strand, within ECD_02470at 2580.486 kb on - strand, within ECD_02470at 2580.490 kb on - strand, within ECD_02470at 2580.631 kb on + strand, within ECD_02470at 2580.846 kb on + strandat 2581.010 kb on - strandat 2581.265 kb on - strand, within ECD_02471at 2581.265 kb on - strand, within ECD_02471at 2581.265 kb on - strand, within ECD_02471at 2581.265 kb on - strand, within ECD_02471at 2581.266 kb on + strand, within ECD_02471at 2581.267 kb on - strand, within ECD_02471at 2581.267 kb on - strand, within ECD_02471at 2581.267 kb on - strand, within ECD_02471at 2581.363 kb on - strand, within ECD_02471at 2581.372 kb on - strand, within ECD_02471at 2581.485 kb on - strand, within ECD_02471at 2581.485 kb on - strand, within ECD_02471at 2581.536 kb on - strand, within ECD_02471at 2581.716 kb on - strand, within ECD_02471at 2581.781 kb on - strand, within ECD_02471

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1267
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2,578,628 + -0.9
2,578,629 - +0.1
2,578,629 - +0.2
2,578,629 - +0.5
2,578,629 - +0.8
2,578,629 - +0.2
2,578,632 + -0.1
2,578,632 + +0.9
2,578,633 - -0.3
2,578,641 - +0.8
2,578,641 - +0.2
2,578,801 + ECD_02469 0.24 -0.6
2,578,820 - ECD_02469 0.26 +1.1
2,578,843 - ECD_02469 0.29 +0.2
2,578,933 - ECD_02469 0.41 -0.0
2,578,938 + ECD_02469 0.42 -0.5
2,578,939 - ECD_02469 0.42 -0.0
2,578,939 - ECD_02469 0.42 -0.2
2,578,991 + ECD_02469 0.49 +0.1
2,578,991 + ECD_02469 0.49 -0.9
2,578,992 - ECD_02469 0.49 +0.6
2,578,992 - ECD_02469 0.49 -0.2
2,578,992 - ECD_02469 0.49 +2.7
2,578,992 - ECD_02469 0.49 +0.1
2,579,012 - ECD_02469 0.52 -0.6
2,579,024 - ECD_02469 0.54 +0.6
2,579,230 + ECD_02469 0.82 -0.1
2,579,265 + ECD_02469 0.86 -1.0
2,579,352 + +0.1
2,579,353 - -1.8
2,579,353 - +0.3
2,579,490 + -0.4
2,579,801 + ECD_02470 0.23 -2.2
2,579,841 + ECD_02470 0.26 -0.2
2,579,841 + ECD_02470 0.26 -1.6
2,579,841 + ECD_02470 0.26 -1.9
2,579,842 - ECD_02470 0.26 +0.4
2,579,844 - ECD_02470 0.26 -0.6
2,579,913 + ECD_02470 0.31 -0.6
2,579,913 + ECD_02470 0.31 -1.5
2,579,914 - ECD_02470 0.31 -2.2
2,579,914 - ECD_02470 0.31 -0.9
2,579,914 - ECD_02470 0.31 -2.8
2,579,978 + ECD_02470 0.36 -1.0
2,579,979 - ECD_02470 0.36 -0.6
2,580,014 + ECD_02470 0.39 -0.9
2,580,014 + ECD_02470 0.39 -1.7
2,580,324 + ECD_02470 0.62 -2.1
2,580,486 - ECD_02470 0.74 -1.6
2,580,490 - ECD_02470 0.74 -1.2
2,580,631 + ECD_02470 0.85 -0.0
2,580,846 + -0.5
2,581,010 - +0.8
2,581,265 - ECD_02471 0.26 +0.7
2,581,265 - ECD_02471 0.26 +0.0
2,581,265 - ECD_02471 0.26 -0.1
2,581,265 - ECD_02471 0.26 +0.9
2,581,266 + ECD_02471 0.26 -0.9
2,581,267 - ECD_02471 0.26 -0.6
2,581,267 - ECD_02471 0.26 +0.7
2,581,267 - ECD_02471 0.26 -0.1
2,581,363 - ECD_02471 0.37 -0.2
2,581,372 - ECD_02471 0.38 -1.0
2,581,485 - ECD_02471 0.51 +0.2
2,581,485 - ECD_02471 0.51 +0.1
2,581,536 - ECD_02471 0.56 +0.4
2,581,716 - ECD_02471 0.77 +0.4
2,581,781 - ECD_02471 0.84 -0.5

Or see this region's nucleotide sequence