Strain Fitness in Escherichia coli BL21 around ECD_02411

Experiment: Laval1267

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02409 and ECD_02410 are separated by 149 nucleotidesECD_02410 and ECD_02411 are separated by 148 nucleotidesECD_02411 and ECD_02412 are separated by 0 nucleotides ECD_02409: ECD_02409 - dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent, at 2,507,609 to 2,508,763 _02409 ECD_02410: ECD_02410 - multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase, at 2,508,913 to 2,509,344 _02410 ECD_02411: ECD_02411 - penicillin-insensitive murein repair transglycosylase; inactive transpeptidase domain protein, at 2,509,493 to 2,511,805 _02411 ECD_02412: ECD_02412 - bacterial alpha2-macroglobulin colonization factor ECAM; anti-host protease defense factor; periplasmic inner membrane-anchored lipoprotein, at 2,511,806 to 2,516,767 _02412 Position (kb) 2509 2510 2511 2512Strain fitness (log2 ratio) -2 -1 0 1 2at 2508.610 kb on - strand, within ECD_02409at 2508.615 kb on + strand, within ECD_02409at 2508.616 kb on - strand, within ECD_02409at 2508.616 kb on - strand, within ECD_02409at 2508.616 kb on - strand, within ECD_02409at 2508.616 kb on - strand, within ECD_02409at 2508.616 kb on - strand, within ECD_02409at 2508.616 kb on - strand, within ECD_02409at 2508.749 kb on + strandat 2508.750 kb on - strandat 2508.763 kb on + strandat 2508.764 kb on - strandat 2508.764 kb on - strandat 2508.764 kb on - strandat 2508.764 kb on - strandat 2508.764 kb on - strandat 2508.768 kb on + strandat 2508.768 kb on + strandat 2508.769 kb on - strandat 2508.769 kb on - strandat 2508.786 kb on - strandat 2508.862 kb on - strandat 2509.281 kb on + strand, within ECD_02410at 2509.357 kb on - strandat 2509.357 kb on - strandat 2509.403 kb on + strandat 2509.554 kb on + strandat 2509.847 kb on + strand, within ECD_02411at 2509.848 kb on - strand, within ECD_02411at 2509.953 kb on - strand, within ECD_02411at 2509.955 kb on + strand, within ECD_02411at 2510.119 kb on + strand, within ECD_02411at 2510.119 kb on + strand, within ECD_02411at 2510.122 kb on + strand, within ECD_02411at 2510.122 kb on + strand, within ECD_02411at 2510.217 kb on + strand, within ECD_02411at 2510.409 kb on - strand, within ECD_02411at 2510.451 kb on + strand, within ECD_02411at 2510.451 kb on + strand, within ECD_02411at 2510.451 kb on + strand, within ECD_02411at 2510.452 kb on - strand, within ECD_02411at 2510.532 kb on + strand, within ECD_02411at 2510.532 kb on + strand, within ECD_02411at 2510.556 kb on - strand, within ECD_02411at 2510.983 kb on + strand, within ECD_02411at 2510.984 kb on - strand, within ECD_02411at 2510.984 kb on - strand, within ECD_02411at 2510.984 kb on - strand, within ECD_02411at 2510.984 kb on - strand, within ECD_02411at 2510.984 kb on - strand, within ECD_02411at 2510.984 kb on - strand, within ECD_02411at 2511.146 kb on - strand, within ECD_02411at 2511.237 kb on + strand, within ECD_02411at 2511.268 kb on - strand, within ECD_02411at 2511.327 kb on + strand, within ECD_02411at 2511.327 kb on + strand, within ECD_02411at 2511.470 kb on - strand, within ECD_02411at 2511.559 kb on - strand, within ECD_02411at 2511.579 kb on + strandat 2511.580 kb on - strandat 2511.807 kb on + strandat 2511.808 kb on - strandat 2511.808 kb on - strandat 2511.808 kb on - strandat 2511.864 kb on + strandat 2511.864 kb on + strandat 2511.864 kb on + strandat 2511.865 kb on - strandat 2511.865 kb on - strandat 2511.865 kb on - strandat 2511.897 kb on + strandat 2512.192 kb on + strandat 2512.219 kb on + strandat 2512.220 kb on - strandat 2512.229 kb on - strandat 2512.237 kb on + strandat 2512.460 kb on - strand, within ECD_02412at 2512.548 kb on + strand, within ECD_02412at 2512.548 kb on + strand, within ECD_02412at 2512.618 kb on + strand, within ECD_02412at 2512.619 kb on - strand, within ECD_02412at 2512.619 kb on - strand, within ECD_02412

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1267
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2,508,610 - ECD_02409 0.87 -0.8
2,508,615 + ECD_02409 0.87 +0.4
2,508,616 - ECD_02409 0.87 +1.4
2,508,616 - ECD_02409 0.87 +0.5
2,508,616 - ECD_02409 0.87 -0.4
2,508,616 - ECD_02409 0.87 -0.8
2,508,616 - ECD_02409 0.87 -0.9
2,508,616 - ECD_02409 0.87 +0.2
2,508,749 + -0.1
2,508,750 - -0.3
2,508,763 + -0.4
2,508,764 - +0.6
2,508,764 - +0.2
2,508,764 - +1.0
2,508,764 - +0.3
2,508,764 - -0.5
2,508,768 + -0.4
2,508,768 + -1.0
2,508,769 - -0.5
2,508,769 - -0.7
2,508,786 - -0.2
2,508,862 - -0.7
2,509,281 + ECD_02410 0.85 +0.6
2,509,357 - -0.8
2,509,357 - +0.3
2,509,403 + -1.1
2,509,554 + -0.2
2,509,847 + ECD_02411 0.15 +0.6
2,509,848 - ECD_02411 0.15 +0.6
2,509,953 - ECD_02411 0.20 +0.4
2,509,955 + ECD_02411 0.20 -0.6
2,510,119 + ECD_02411 0.27 +0.1
2,510,119 + ECD_02411 0.27 +0.3
2,510,122 + ECD_02411 0.27 +0.5
2,510,122 + ECD_02411 0.27 +1.2
2,510,217 + ECD_02411 0.31 -0.2
2,510,409 - ECD_02411 0.40 +0.4
2,510,451 + ECD_02411 0.41 -1.4
2,510,451 + ECD_02411 0.41 +0.4
2,510,451 + ECD_02411 0.41 +0.0
2,510,452 - ECD_02411 0.41 +0.6
2,510,532 + ECD_02411 0.45 +1.8
2,510,532 + ECD_02411 0.45 +1.0
2,510,556 - ECD_02411 0.46 +2.4
2,510,983 + ECD_02411 0.64 -0.1
2,510,984 - ECD_02411 0.64 +0.6
2,510,984 - ECD_02411 0.64 +0.6
2,510,984 - ECD_02411 0.64 +0.2
2,510,984 - ECD_02411 0.64 +1.1
2,510,984 - ECD_02411 0.64 -0.9
2,510,984 - ECD_02411 0.64 +0.2
2,511,146 - ECD_02411 0.71 -0.6
2,511,237 + ECD_02411 0.75 -0.6
2,511,268 - ECD_02411 0.77 -0.3
2,511,327 + ECD_02411 0.79 +1.6
2,511,327 + ECD_02411 0.79 -0.1
2,511,470 - ECD_02411 0.85 -0.1
2,511,559 - ECD_02411 0.89 -1.2
2,511,579 + +1.3
2,511,580 - +0.9
2,511,807 + -0.4
2,511,808 - -0.3
2,511,808 - -0.2
2,511,808 - -0.8
2,511,864 + -0.4
2,511,864 + -0.7
2,511,864 + +0.3
2,511,865 - -0.1
2,511,865 - +0.1
2,511,865 - +0.1
2,511,897 + +0.5
2,512,192 + -0.8
2,512,219 + -0.4
2,512,220 - +0.3
2,512,229 - +0.5
2,512,237 + +0.5
2,512,460 - ECD_02412 0.13 +0.8
2,512,548 + ECD_02412 0.15 +0.4
2,512,548 + ECD_02412 0.15 +0.6
2,512,618 + ECD_02412 0.16 +0.6
2,512,619 - ECD_02412 0.16 -0.6
2,512,619 - ECD_02412 0.16 -1.9

Or see this region's nucleotide sequence