Experiment: Laval1267
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02409 and ECD_02410 are separated by 149 nucleotides ECD_02410 and ECD_02411 are separated by 148 nucleotides ECD_02411 and ECD_02412 are separated by 0 nucleotides
ECD_02409: ECD_02409 - dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent, at 2,507,609 to 2,508,763
_02409
ECD_02410: ECD_02410 - multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase, at 2,508,913 to 2,509,344
_02410
ECD_02411: ECD_02411 - penicillin-insensitive murein repair transglycosylase; inactive transpeptidase domain protein, at 2,509,493 to 2,511,805
_02411
ECD_02412: ECD_02412 - bacterial alpha2-macroglobulin colonization factor ECAM; anti-host protease defense factor; periplasmic inner membrane-anchored lipoprotein, at 2,511,806 to 2,516,767
_02412
Position (kb)
2509
2510
2511
2512 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2508.610 kb on - strand, within ECD_02409 at 2508.615 kb on + strand, within ECD_02409 at 2508.616 kb on - strand, within ECD_02409 at 2508.616 kb on - strand, within ECD_02409 at 2508.616 kb on - strand, within ECD_02409 at 2508.616 kb on - strand, within ECD_02409 at 2508.616 kb on - strand, within ECD_02409 at 2508.616 kb on - strand, within ECD_02409 at 2508.749 kb on + strand at 2508.750 kb on - strand at 2508.763 kb on + strand at 2508.764 kb on - strand at 2508.764 kb on - strand at 2508.764 kb on - strand at 2508.764 kb on - strand at 2508.764 kb on - strand at 2508.768 kb on + strand at 2508.768 kb on + strand at 2508.769 kb on - strand at 2508.769 kb on - strand at 2508.786 kb on - strand at 2508.862 kb on - strand at 2509.281 kb on + strand, within ECD_02410 at 2509.357 kb on - strand at 2509.357 kb on - strand at 2509.403 kb on + strand at 2509.554 kb on + strand at 2509.847 kb on + strand, within ECD_02411 at 2509.848 kb on - strand, within ECD_02411 at 2509.953 kb on - strand, within ECD_02411 at 2509.955 kb on + strand, within ECD_02411 at 2510.119 kb on + strand, within ECD_02411 at 2510.119 kb on + strand, within ECD_02411 at 2510.122 kb on + strand, within ECD_02411 at 2510.122 kb on + strand, within ECD_02411 at 2510.217 kb on + strand, within ECD_02411 at 2510.409 kb on - strand, within ECD_02411 at 2510.451 kb on + strand, within ECD_02411 at 2510.451 kb on + strand, within ECD_02411 at 2510.451 kb on + strand, within ECD_02411 at 2510.452 kb on - strand, within ECD_02411 at 2510.532 kb on + strand, within ECD_02411 at 2510.532 kb on + strand, within ECD_02411 at 2510.556 kb on - strand, within ECD_02411 at 2510.983 kb on + strand, within ECD_02411 at 2510.984 kb on - strand, within ECD_02411 at 2510.984 kb on - strand, within ECD_02411 at 2510.984 kb on - strand, within ECD_02411 at 2510.984 kb on - strand, within ECD_02411 at 2510.984 kb on - strand, within ECD_02411 at 2510.984 kb on - strand, within ECD_02411 at 2511.146 kb on - strand, within ECD_02411 at 2511.237 kb on + strand, within ECD_02411 at 2511.268 kb on - strand, within ECD_02411 at 2511.327 kb on + strand, within ECD_02411 at 2511.327 kb on + strand, within ECD_02411 at 2511.470 kb on - strand, within ECD_02411 at 2511.559 kb on - strand, within ECD_02411 at 2511.579 kb on + strand at 2511.580 kb on - strand at 2511.807 kb on + strand at 2511.808 kb on - strand at 2511.808 kb on - strand at 2511.808 kb on - strand at 2511.864 kb on + strand at 2511.864 kb on + strand at 2511.864 kb on + strand at 2511.865 kb on - strand at 2511.865 kb on - strand at 2511.865 kb on - strand at 2511.897 kb on + strand at 2512.192 kb on + strand at 2512.219 kb on + strand at 2512.220 kb on - strand at 2512.229 kb on - strand at 2512.237 kb on + strand at 2512.460 kb on - strand, within ECD_02412 at 2512.548 kb on + strand, within ECD_02412 at 2512.548 kb on + strand, within ECD_02412 at 2512.618 kb on + strand, within ECD_02412 at 2512.619 kb on - strand, within ECD_02412 at 2512.619 kb on - strand, within ECD_02412
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1267 remove 2,508,610 - ECD_02409 0.87 -0.8 2,508,615 + ECD_02409 0.87 +0.4 2,508,616 - ECD_02409 0.87 +1.4 2,508,616 - ECD_02409 0.87 +0.5 2,508,616 - ECD_02409 0.87 -0.4 2,508,616 - ECD_02409 0.87 -0.8 2,508,616 - ECD_02409 0.87 -0.9 2,508,616 - ECD_02409 0.87 +0.2 2,508,749 + -0.1 2,508,750 - -0.3 2,508,763 + -0.4 2,508,764 - +0.6 2,508,764 - +0.2 2,508,764 - +1.0 2,508,764 - +0.3 2,508,764 - -0.5 2,508,768 + -0.4 2,508,768 + -1.0 2,508,769 - -0.5 2,508,769 - -0.7 2,508,786 - -0.2 2,508,862 - -0.7 2,509,281 + ECD_02410 0.85 +0.6 2,509,357 - -0.8 2,509,357 - +0.3 2,509,403 + -1.1 2,509,554 + -0.2 2,509,847 + ECD_02411 0.15 +0.6 2,509,848 - ECD_02411 0.15 +0.6 2,509,953 - ECD_02411 0.20 +0.4 2,509,955 + ECD_02411 0.20 -0.6 2,510,119 + ECD_02411 0.27 +0.1 2,510,119 + ECD_02411 0.27 +0.3 2,510,122 + ECD_02411 0.27 +0.5 2,510,122 + ECD_02411 0.27 +1.2 2,510,217 + ECD_02411 0.31 -0.2 2,510,409 - ECD_02411 0.40 +0.4 2,510,451 + ECD_02411 0.41 -1.4 2,510,451 + ECD_02411 0.41 +0.4 2,510,451 + ECD_02411 0.41 +0.0 2,510,452 - ECD_02411 0.41 +0.6 2,510,532 + ECD_02411 0.45 +1.8 2,510,532 + ECD_02411 0.45 +1.0 2,510,556 - ECD_02411 0.46 +2.4 2,510,983 + ECD_02411 0.64 -0.1 2,510,984 - ECD_02411 0.64 +0.6 2,510,984 - ECD_02411 0.64 +0.6 2,510,984 - ECD_02411 0.64 +0.2 2,510,984 - ECD_02411 0.64 +1.1 2,510,984 - ECD_02411 0.64 -0.9 2,510,984 - ECD_02411 0.64 +0.2 2,511,146 - ECD_02411 0.71 -0.6 2,511,237 + ECD_02411 0.75 -0.6 2,511,268 - ECD_02411 0.77 -0.3 2,511,327 + ECD_02411 0.79 +1.6 2,511,327 + ECD_02411 0.79 -0.1 2,511,470 - ECD_02411 0.85 -0.1 2,511,559 - ECD_02411 0.89 -1.2 2,511,579 + +1.3 2,511,580 - +0.9 2,511,807 + -0.4 2,511,808 - -0.3 2,511,808 - -0.2 2,511,808 - -0.8 2,511,864 + -0.4 2,511,864 + -0.7 2,511,864 + +0.3 2,511,865 - -0.1 2,511,865 - +0.1 2,511,865 - +0.1 2,511,897 + +0.5 2,512,192 + -0.8 2,512,219 + -0.4 2,512,220 - +0.3 2,512,229 - +0.5 2,512,237 + +0.5 2,512,460 - ECD_02412 0.13 +0.8 2,512,548 + ECD_02412 0.15 +0.4 2,512,548 + ECD_02412 0.15 +0.6 2,512,618 + ECD_02412 0.16 +0.6 2,512,619 - ECD_02412 0.16 -0.6 2,512,619 - ECD_02412 0.16 -1.9
Or see this region's nucleotide sequence