Experiment: Laval1267
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02286 and ECD_02287 are separated by 76 nucleotides ECD_02287 and ECD_02288 are separated by 352 nucleotides ECD_02288 and ECD_04338 are separated by 310 nucleotides ECD_04338 and ECD_02289 are separated by 64 nucleotides
ECD_02286: ECD_02286 - putative lipoprotein involved in colanic acid biosynthesis, at 2,372,583 to 2,372,858
_02286
ECD_02287: ECD_02287 - DUF2545 family putative inner membrane protein, at 2,372,935 to 2,373,177
_02287
ECD_02288: ECD_02288 - palmitoleoyl-acyl carrier protein (ACP)-dependent acyltransferase, at 2,373,530 to 2,374,450
_02288
ECD_04338: ECD_04338 - inner membrane protein, at 2,374,761 to 2,374,877
_04338
ECD_02289: ECD_02289 - glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase, at 2,374,942 to 2,376,180
_02289
Position (kb)
2373
2374
2375 Strain fitness (log2 ratio)
-1
0
1 at 2372.813 kb on + strand, within ECD_02286 at 2372.998 kb on - strand, within ECD_02287 at 2373.047 kb on + strand, within ECD_02287 at 2373.051 kb on - strand, within ECD_02287 at 2373.167 kb on - strand at 2373.167 kb on - strand at 2373.167 kb on - strand at 2373.171 kb on - strand at 2373.367 kb on - strand at 2373.517 kb on - strand at 2373.526 kb on - strand at 2373.530 kb on - strand at 2373.564 kb on + strand at 2373.603 kb on + strand at 2373.603 kb on + strand at 2373.630 kb on - strand, within ECD_02288 at 2373.845 kb on - strand, within ECD_02288 at 2373.982 kb on + strand, within ECD_02288 at 2373.986 kb on + strand, within ECD_02288 at 2373.987 kb on - strand, within ECD_02288 at 2374.000 kb on + strand, within ECD_02288 at 2374.069 kb on + strand, within ECD_02288 at 2374.136 kb on + strand, within ECD_02288 at 2374.205 kb on + strand, within ECD_02288 at 2374.448 kb on + strand at 2374.448 kb on + strand at 2374.648 kb on + strand at 2374.719 kb on + strand at 2374.759 kb on + strand at 2374.760 kb on - strand at 2374.785 kb on - strand, within ECD_04338 at 2374.963 kb on - strand at 2374.963 kb on - strand at 2375.011 kb on - strand at 2375.169 kb on - strand, within ECD_02289 at 2375.255 kb on - strand, within ECD_02289 at 2375.274 kb on - strand, within ECD_02289 at 2375.376 kb on + strand, within ECD_02289 at 2375.416 kb on - strand, within ECD_02289
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1267 remove 2,372,813 + ECD_02286 0.83 -1.0 2,372,998 - ECD_02287 0.26 -1.0 2,373,047 + ECD_02287 0.46 +0.7 2,373,051 - ECD_02287 0.48 -0.3 2,373,167 - +1.2 2,373,167 - +0.1 2,373,167 - +0.1 2,373,171 - -0.5 2,373,367 - +0.5 2,373,517 - -0.1 2,373,526 - +0.6 2,373,530 - -0.8 2,373,564 + +0.3 2,373,603 + +1.2 2,373,603 + -0.3 2,373,630 - ECD_02288 0.11 -0.7 2,373,845 - ECD_02288 0.34 -0.3 2,373,982 + ECD_02288 0.49 -1.1 2,373,986 + ECD_02288 0.50 +0.7 2,373,987 - ECD_02288 0.50 -1.3 2,374,000 + ECD_02288 0.51 -0.9 2,374,069 + ECD_02288 0.59 -0.5 2,374,136 + ECD_02288 0.66 +0.1 2,374,205 + ECD_02288 0.73 -0.3 2,374,448 + +0.0 2,374,448 + -0.0 2,374,648 + -0.1 2,374,719 + +0.7 2,374,759 + -0.3 2,374,760 - +1.2 2,374,785 - ECD_04338 0.21 +0.2 2,374,963 - -1.2 2,374,963 - +0.6 2,375,011 - -0.7 2,375,169 - ECD_02289 0.18 +0.7 2,375,255 - ECD_02289 0.25 -1.0 2,375,274 - ECD_02289 0.27 +0.1 2,375,376 + ECD_02289 0.35 -0.8 2,375,416 - ECD_02289 0.38 +1.3
Or see this region's nucleotide sequence