Strain Fitness in Escherichia coli BL21 around ECD_02288

Experiment: Laval1267

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02286 and ECD_02287 are separated by 76 nucleotidesECD_02287 and ECD_02288 are separated by 352 nucleotidesECD_02288 and ECD_04338 are separated by 310 nucleotidesECD_04338 and ECD_02289 are separated by 64 nucleotides ECD_02286: ECD_02286 - putative lipoprotein involved in colanic acid biosynthesis, at 2,372,583 to 2,372,858 _02286 ECD_02287: ECD_02287 - DUF2545 family putative inner membrane protein, at 2,372,935 to 2,373,177 _02287 ECD_02288: ECD_02288 - palmitoleoyl-acyl carrier protein (ACP)-dependent acyltransferase, at 2,373,530 to 2,374,450 _02288 ECD_04338: ECD_04338 - inner membrane protein, at 2,374,761 to 2,374,877 _04338 ECD_02289: ECD_02289 - glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase, at 2,374,942 to 2,376,180 _02289 Position (kb) 2373 2374 2375Strain fitness (log2 ratio) -1 0 1at 2372.813 kb on + strand, within ECD_02286at 2372.998 kb on - strand, within ECD_02287at 2373.047 kb on + strand, within ECD_02287at 2373.051 kb on - strand, within ECD_02287at 2373.167 kb on - strandat 2373.167 kb on - strandat 2373.167 kb on - strandat 2373.171 kb on - strandat 2373.367 kb on - strandat 2373.517 kb on - strandat 2373.526 kb on - strandat 2373.530 kb on - strandat 2373.564 kb on + strandat 2373.603 kb on + strandat 2373.603 kb on + strandat 2373.630 kb on - strand, within ECD_02288at 2373.845 kb on - strand, within ECD_02288at 2373.982 kb on + strand, within ECD_02288at 2373.986 kb on + strand, within ECD_02288at 2373.987 kb on - strand, within ECD_02288at 2374.000 kb on + strand, within ECD_02288at 2374.069 kb on + strand, within ECD_02288at 2374.136 kb on + strand, within ECD_02288at 2374.205 kb on + strand, within ECD_02288at 2374.448 kb on + strandat 2374.448 kb on + strandat 2374.648 kb on + strandat 2374.719 kb on + strandat 2374.759 kb on + strandat 2374.760 kb on - strandat 2374.785 kb on - strand, within ECD_04338at 2374.963 kb on - strandat 2374.963 kb on - strandat 2375.011 kb on - strandat 2375.169 kb on - strand, within ECD_02289at 2375.255 kb on - strand, within ECD_02289at 2375.274 kb on - strand, within ECD_02289at 2375.376 kb on + strand, within ECD_02289at 2375.416 kb on - strand, within ECD_02289

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1267
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2,372,813 + ECD_02286 0.83 -1.0
2,372,998 - ECD_02287 0.26 -1.0
2,373,047 + ECD_02287 0.46 +0.7
2,373,051 - ECD_02287 0.48 -0.3
2,373,167 - +1.2
2,373,167 - +0.1
2,373,167 - +0.1
2,373,171 - -0.5
2,373,367 - +0.5
2,373,517 - -0.1
2,373,526 - +0.6
2,373,530 - -0.8
2,373,564 + +0.3
2,373,603 + +1.2
2,373,603 + -0.3
2,373,630 - ECD_02288 0.11 -0.7
2,373,845 - ECD_02288 0.34 -0.3
2,373,982 + ECD_02288 0.49 -1.1
2,373,986 + ECD_02288 0.50 +0.7
2,373,987 - ECD_02288 0.50 -1.3
2,374,000 + ECD_02288 0.51 -0.9
2,374,069 + ECD_02288 0.59 -0.5
2,374,136 + ECD_02288 0.66 +0.1
2,374,205 + ECD_02288 0.73 -0.3
2,374,448 + +0.0
2,374,448 + -0.0
2,374,648 + -0.1
2,374,719 + +0.7
2,374,759 + -0.3
2,374,760 - +1.2
2,374,785 - ECD_04338 0.21 +0.2
2,374,963 - -1.2
2,374,963 - +0.6
2,375,011 - -0.7
2,375,169 - ECD_02289 0.18 +0.7
2,375,255 - ECD_02289 0.25 -1.0
2,375,274 - ECD_02289 0.27 +0.1
2,375,376 + ECD_02289 0.35 -0.8
2,375,416 - ECD_02289 0.38 +1.3

Or see this region's nucleotide sequence