Experiment: Laval1267
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02150 and ECD_02151 are separated by 30 nucleotides ECD_02151 and ECD_02152 are separated by 73 nucleotides ECD_02152 and ECD_02153 are separated by 4 nucleotides
ECD_02150: ECD_02150 - short chain fatty acid transporter, at 2,215,117 to 2,216,439
_02150
ECD_02151: ECD_02151 - acetyl-CoA acetyltransferase, at 2,216,470 to 2,217,654
_02151
ECD_02152: ECD_02152 - DUF2135 family protein, putative host defense protein, at 2,217,728 to 2,218,504
_02152
ECD_02153: ECD_02153 - tandem DUF2300 domain protein, putative host defense protein, at 2,218,509 to 2,220,158
_02153
Position (kb)
2216
2217
2218 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2215.971 kb on - strand, within ECD_02150 at 2215.975 kb on - strand, within ECD_02150 at 2215.975 kb on - strand, within ECD_02150 at 2215.991 kb on - strand, within ECD_02150 at 2215.992 kb on + strand, within ECD_02150 at 2216.053 kb on + strand, within ECD_02150 at 2216.054 kb on - strand, within ECD_02150 at 2216.175 kb on + strand, within ECD_02150 at 2216.378 kb on - strand at 2216.503 kb on - strand at 2216.571 kb on + strand at 2216.572 kb on - strand at 2216.640 kb on - strand, within ECD_02151 at 2216.729 kb on + strand, within ECD_02151 at 2216.836 kb on + strand, within ECD_02151 at 2217.011 kb on + strand, within ECD_02151 at 2217.011 kb on + strand, within ECD_02151 at 2217.012 kb on - strand, within ECD_02151 at 2217.058 kb on - strand, within ECD_02151 at 2217.557 kb on + strand at 2217.557 kb on + strand at 2217.653 kb on - strand at 2217.770 kb on - strand at 2217.784 kb on + strand at 2217.785 kb on - strand at 2217.785 kb on - strand at 2217.874 kb on - strand, within ECD_02152 at 2217.877 kb on - strand, within ECD_02152 at 2217.886 kb on - strand, within ECD_02152 at 2217.886 kb on - strand, within ECD_02152 at 2217.997 kb on - strand, within ECD_02152 at 2218.357 kb on - strand, within ECD_02152 at 2218.546 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1267 remove 2,215,971 - ECD_02150 0.65 +0.2 2,215,975 - ECD_02150 0.65 +0.2 2,215,975 - ECD_02150 0.65 -0.7 2,215,991 - ECD_02150 0.66 -0.9 2,215,992 + ECD_02150 0.66 +1.1 2,216,053 + ECD_02150 0.71 +0.7 2,216,054 - ECD_02150 0.71 +0.0 2,216,175 + ECD_02150 0.80 +0.4 2,216,378 - -1.0 2,216,503 - +0.1 2,216,571 + +0.7 2,216,572 - +0.1 2,216,640 - ECD_02151 0.14 -0.2 2,216,729 + ECD_02151 0.22 +0.5 2,216,836 + ECD_02151 0.31 +0.4 2,217,011 + ECD_02151 0.46 +0.4 2,217,011 + ECD_02151 0.46 +0.1 2,217,012 - ECD_02151 0.46 -1.7 2,217,058 - ECD_02151 0.50 -0.1 2,217,557 + +1.0 2,217,557 + -0.0 2,217,653 - -0.7 2,217,770 - -0.1 2,217,784 + +0.9 2,217,785 - +1.3 2,217,785 - -1.3 2,217,874 - ECD_02152 0.19 +0.4 2,217,877 - ECD_02152 0.19 -3.1 2,217,886 - ECD_02152 0.20 -0.4 2,217,886 - ECD_02152 0.20 +0.4 2,217,997 - ECD_02152 0.35 -0.0 2,218,357 - ECD_02152 0.81 +0.3 2,218,546 + +0.3
Or see this region's nucleotide sequence