Experiment: Laval1267
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01843 and ECD_01844 are separated by 24 nucleotides ECD_01844 and ECD_01845 are separated by 387 nucleotides
ECD_01843: ECD_01843 - trimethylamine N-oxide reductase system III, catalytic subunit, at 1,900,496 to 1,902,925
_01843
ECD_01844: ECD_01844 - TMAO reductase III (TorYZ), cytochrome c-type subunit, at 1,902,950 to 1,904,050
_01844
ECD_01845: ECD_01845 - copper homeostasis protein, at 1,904,438 to 1,905,184
_01845
Position (kb)
1902
1903
1904
1905 Strain fitness (log2 ratio)
-2
-1
0
1 at 1902.345 kb on + strand, within ECD_01843 at 1902.403 kb on - strand, within ECD_01843 at 1902.443 kb on - strand, within ECD_01843 at 1902.444 kb on + strand, within ECD_01843 at 1902.445 kb on - strand, within ECD_01843 at 1902.541 kb on + strand, within ECD_01843 at 1902.569 kb on + strand, within ECD_01843 at 1902.570 kb on - strand, within ECD_01843 at 1902.597 kb on + strand, within ECD_01843 at 1902.597 kb on + strand, within ECD_01843 at 1902.598 kb on - strand, within ECD_01843 at 1902.598 kb on - strand, within ECD_01843 at 1902.714 kb on - strand at 1903.078 kb on - strand, within ECD_01844 at 1903.141 kb on - strand, within ECD_01844 at 1903.265 kb on - strand, within ECD_01844 at 1904.540 kb on - strand, within ECD_01845 at 1904.540 kb on - strand, within ECD_01845 at 1904.540 kb on - strand, within ECD_01845 at 1904.540 kb on - strand, within ECD_01845 at 1904.597 kb on - strand, within ECD_01845
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1267 remove 1,902,345 + ECD_01843 0.76 -1.0 1,902,403 - ECD_01843 0.78 -0.4 1,902,443 - ECD_01843 0.80 +1.0 1,902,444 + ECD_01843 0.80 -1.7 1,902,445 - ECD_01843 0.80 -0.7 1,902,541 + ECD_01843 0.84 -0.7 1,902,569 + ECD_01843 0.85 -1.8 1,902,570 - ECD_01843 0.85 -0.5 1,902,597 + ECD_01843 0.86 +0.3 1,902,597 + ECD_01843 0.86 -0.2 1,902,598 - ECD_01843 0.87 -0.9 1,902,598 - ECD_01843 0.87 +0.1 1,902,714 - +0.1 1,903,078 - ECD_01844 0.12 -0.2 1,903,141 - ECD_01844 0.17 -0.7 1,903,265 - ECD_01844 0.29 -0.5 1,904,540 - ECD_01845 0.14 -0.1 1,904,540 - ECD_01845 0.14 -0.5 1,904,540 - ECD_01845 0.14 +0.2 1,904,540 - ECD_01845 0.14 +0.2 1,904,597 - ECD_01845 0.21 -0.8
Or see this region's nucleotide sequence