Experiment: Laval1267
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01842 and ECD_01843 are separated by 164 nucleotides ECD_01843 and ECD_01844 are separated by 24 nucleotides
ECD_01842: ECD_01842 - tRNA (cmo5U34)-carboxymethyltransferase, carboxy-SAM-dependent, at 1,899,360 to 1,900,331
_01842
ECD_01843: ECD_01843 - trimethylamine N-oxide reductase system III, catalytic subunit, at 1,900,496 to 1,902,925
_01843
ECD_01844: ECD_01844 - TMAO reductase III (TorYZ), cytochrome c-type subunit, at 1,902,950 to 1,904,050
_01844
Position (kb)
1900
1901
1902
1903 Strain fitness (log2 ratio)
-2
-1
0
1 at 1899.522 kb on + strand, within ECD_01842 at 1899.587 kb on + strand, within ECD_01842 at 1899.648 kb on + strand, within ECD_01842 at 1900.450 kb on + strand at 1900.552 kb on - strand at 1900.880 kb on - strand, within ECD_01843 at 1900.988 kb on - strand, within ECD_01843 at 1902.345 kb on + strand, within ECD_01843 at 1902.403 kb on - strand, within ECD_01843 at 1902.443 kb on - strand, within ECD_01843 at 1902.444 kb on + strand, within ECD_01843 at 1902.445 kb on - strand, within ECD_01843 at 1902.541 kb on + strand, within ECD_01843 at 1902.569 kb on + strand, within ECD_01843 at 1902.570 kb on - strand, within ECD_01843 at 1902.597 kb on + strand, within ECD_01843 at 1902.597 kb on + strand, within ECD_01843 at 1902.598 kb on - strand, within ECD_01843 at 1902.598 kb on - strand, within ECD_01843 at 1902.714 kb on - strand at 1903.078 kb on - strand, within ECD_01844 at 1903.141 kb on - strand, within ECD_01844 at 1903.265 kb on - strand, within ECD_01844
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1267 remove 1,899,522 + ECD_01842 0.17 +0.5 1,899,587 + ECD_01842 0.23 +0.3 1,899,648 + ECD_01842 0.30 -0.5 1,900,450 + +0.2 1,900,552 - -0.1 1,900,880 - ECD_01843 0.16 -0.1 1,900,988 - ECD_01843 0.20 +0.3 1,902,345 + ECD_01843 0.76 -1.0 1,902,403 - ECD_01843 0.78 -0.4 1,902,443 - ECD_01843 0.80 +1.0 1,902,444 + ECD_01843 0.80 -1.7 1,902,445 - ECD_01843 0.80 -0.7 1,902,541 + ECD_01843 0.84 -0.7 1,902,569 + ECD_01843 0.85 -1.8 1,902,570 - ECD_01843 0.85 -0.5 1,902,597 + ECD_01843 0.86 +0.3 1,902,597 + ECD_01843 0.86 -0.2 1,902,598 - ECD_01843 0.87 -0.9 1,902,598 - ECD_01843 0.87 +0.1 1,902,714 - +0.1 1,903,078 - ECD_01844 0.12 -0.2 1,903,141 - ECD_01844 0.17 -0.7 1,903,265 - ECD_01844 0.29 -0.5
Or see this region's nucleotide sequence