Strain Fitness in Escherichia coli BL21 around ECD_01312

Experiment: Laval1267

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01312 and ECD_01313 are separated by 10 nucleotides ECD_01312: ECD_01312 - O-6-alkylguanine-DNA:cysteine-protein methyltransferase, at 1,384,889 to 1,385,404 _01312 ECD_01313: ECD_01313 - p-aminobenzoyl-glutamate transporter; membrane protein, at 1,385,415 to 1,386,941 _01313 Position (kb) 1384 1385 1386Strain fitness (log2 ratio) -1 0 1at 1384.007 kb on - strandat 1384.072 kb on - strandat 1384.088 kb on - strandat 1384.172 kb on - strandat 1384.172 kb on - strandat 1384.172 kb on - strandat 1384.172 kb on - strandat 1384.172 kb on - strandat 1384.460 kb on - strandat 1384.460 kb on - strandat 1385.090 kb on + strand, within ECD_01312at 1385.177 kb on - strand, within ECD_01312at 1385.200 kb on - strand, within ECD_01312at 1386.299 kb on - strand, within ECD_01313at 1386.312 kb on + strand, within ECD_01313at 1386.397 kb on - strand, within ECD_01313

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1267
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1,384,007 - +0.6
1,384,072 - -1.0
1,384,088 - +1.2
1,384,172 - -0.0
1,384,172 - +0.4
1,384,172 - +0.1
1,384,172 - -0.1
1,384,172 - -0.9
1,384,460 - -1.2
1,384,460 - +0.5
1,385,090 + ECD_01312 0.39 +1.1
1,385,177 - ECD_01312 0.56 -1.1
1,385,200 - ECD_01312 0.60 +0.4
1,386,299 - ECD_01313 0.58 -0.3
1,386,312 + ECD_01313 0.59 -0.4
1,386,397 - ECD_01313 0.64 -0.5

Or see this region's nucleotide sequence