Strain Fitness in Pseudomonas sp. RS175 around PFR28_05153

Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
5,902,067	+		PFR28_05152	0.55	-0.8
5,902,067	+		PFR28_05152	0.55	-0.5
5,902,067	+		PFR28_05152	0.55	-1.7
5,902,068	-		PFR28_05152	0.55	+0.1
5,902,068	-		PFR28_05152	0.55	+1.7
5,902,118	+		PFR28_05152	0.59	-2.3
5,902,118	+		PFR28_05152	0.59	-0.1
5,902,118	+		PFR28_05152	0.59	+0.1
5,902,118	+		PFR28_05152	0.59	+2.0
5,902,119	-		PFR28_05152	0.59	+0.8
5,902,119	-		PFR28_05152	0.59	+1.9
5,902,119	-		PFR28_05152	0.59	+0.8
5,902,119	-		PFR28_05152	0.59	+1.2
5,902,119	-		PFR28_05152	0.59	+1.6
5,902,121	+		PFR28_05152	0.60	-3.3
5,902,121	+		PFR28_05152	0.60	+2.3
5,902,122	-		PFR28_05152	0.60	+1.0
5,902,122	-		PFR28_05152	0.60	-1.9
5,902,122	-		PFR28_05152	0.60	+1.5
5,902,167	+		PFR28_05152	0.63	-0.2
5,902,168	-		PFR28_05152	0.63	+0.0
5,902,262	-		PFR28_05152	0.71	+1.6
5,902,320	-		PFR28_05152	0.75	-1.2
5,902,322	+		PFR28_05152	0.75	-0.0
5,902,323	-		PFR28_05152	0.75	-1.8
5,902,323	-		PFR28_05152	0.75	+1.3
5,902,323	-		PFR28_05152	0.75	-1.8
5,902,331	+		PFR28_05152	0.76	-1.8
5,902,332	-		PFR28_05152	0.76	+0.9
5,902,375	-		PFR28_05152	0.79	-1.3
5,902,375	-		PFR28_05152	0.79	-0.2
5,902,468	+		PFR28_05152	0.87	+0.1
5,902,496	+		PFR28_05152	0.89	-1.8
5,902,497	-		PFR28_05152	0.89	-0.4
5,902,497	-		PFR28_05152	0.89	-2.5
5,902,583	+				+3.8
5,902,583	+				+2.5
5,902,584	-				+2.5
5,902,584	-				-1.9
5,902,584	-				+1.7
5,902,604	+				+1.8
5,902,685	+				-0.3
5,902,686	-				+0.1
5,902,707	+				-0.8
5,902,725	-				+1.9
5,902,752	+				+0.3
5,902,752	+				+1.0
5,902,753	-				-0.4
5,902,811	+				-1.6
5,902,811	+				-0.5
5,902,812	-				+0.0
5,902,812	-				+0.2
5,902,812	-				+1.0
5,902,812	-				-0.2
5,902,898	+				+0.7
5,902,899	-				-0.5
5,902,957	+				+0.1
5,902,957	+				-1.0
5,902,957	+				-1.7
5,902,957	+				+1.2
5,902,957	+				+2.6
5,902,957	+				-0.1
5,902,957	+				-1.0
5,902,957	+				-1.5
5,902,958	-				-0.8
5,902,958	-				-1.9
5,902,958	-				-3.4
5,902,958	-				-0.4
5,902,958	-				+0.2
5,902,958	-				-0.2
5,902,958	-				+0.6
5,902,958	-				+0.8
5,902,958	-				+0.6
5,902,958	-				+1.1
5,902,979	+				-2.7
5,902,980	-				+2.0
5,903,051	+				-2.3
5,903,145	+		PFR28_05153	0.12	+0.9
5,903,145	+		PFR28_05153	0.12	-0.8
5,903,145	+		PFR28_05153	0.12	-0.9
5,903,145	+		PFR28_05153	0.12	+4.1
5,903,145	+		PFR28_05153	0.12	+2.5
5,903,145	+		PFR28_05153	0.12	+0.2
5,903,145	+		PFR28_05153	0.12	+0.7
5,903,145	+		PFR28_05153	0.12	+0.7
5,903,145	+		PFR28_05153	0.12	+1.1
5,903,145	+		PFR28_05153	0.12	-0.7
5,903,145	+		PFR28_05153	0.12	-0.7
5,903,145	+		PFR28_05153	0.12	-1.5
5,903,145	+		PFR28_05153	0.12	-2.2
5,903,146	-		PFR28_05153	0.12	-1.5
5,903,146	-		PFR28_05153	0.12	+0.6
5,903,146	-		PFR28_05153	0.12	-0.3
5,903,146	-		PFR28_05153	0.12	+0.3
5,903,146	-		PFR28_05153	0.12	+0.9
5,903,146	-		PFR28_05153	0.12	-2.7
5,903,146	-		PFR28_05153	0.12	-0.5
5,903,146	-		PFR28_05153	0.12	+0.6
5,903,146	-		PFR28_05153	0.12	+0.3
5,903,146	-		PFR28_05153	0.12	+0.4
5,903,146	-		PFR28_05153	0.12	+1.1
5,903,146	-		PFR28_05153	0.12	-0.0
5,903,146	-		PFR28_05153	0.12	+0.3
5,903,146	-		PFR28_05153	0.12	-1.1
5,903,146	-		PFR28_05153	0.12	+0.3
5,903,146	-		PFR28_05153	0.12	+1.8
5,903,278	+		PFR28_05153	0.24	-0.9
5,903,349	+		PFR28_05153	0.30	-0.2
5,903,350	-		PFR28_05153	0.30	-0.4
5,903,350	-		PFR28_05153	0.30	-0.4
5,903,350	-		PFR28_05153	0.30	+1.1
5,903,475	+		PFR28_05153	0.41	-2.8
5,903,475	+		PFR28_05153	0.41	-1.1
5,903,475	+		PFR28_05153	0.41	-0.9
5,903,475	+		PFR28_05153	0.41	-0.4
5,903,476	-		PFR28_05153	0.42	-2.1
5,903,476	-		PFR28_05153	0.42	+1.3
5,903,476	-		PFR28_05153	0.42	-1.9
5,903,532	+		PFR28_05153	0.46	+1.1
5,903,532	+		PFR28_05153	0.46	+0.7
5,903,532	+		PFR28_05153	0.46	-1.0
5,903,532	+		PFR28_05153	0.46	-0.4
5,903,532	+		PFR28_05153	0.46	+1.5
5,903,532	+		PFR28_05153	0.46	+3.5
5,903,532	+		PFR28_05153	0.46	+0.1
5,903,532	+		PFR28_05153	0.46	-1.4
5,903,532	+		PFR28_05153	0.46	-1.7
5,903,533	-		PFR28_05153	0.47	+2.7
5,903,533	-		PFR28_05153	0.47	-2.4
5,903,533	-		PFR28_05153	0.47	+1.6
5,903,533	-		PFR28_05153	0.47	+2.6
5,903,533	-		PFR28_05153	0.47	-1.7
5,903,533	-		PFR28_05153	0.47	+1.2
5,903,533	-		PFR28_05153	0.47	+0.4
5,903,598	+		PFR28_05153	0.52	+0.7
5,903,598	+		PFR28_05153	0.52	-0.3
5,903,599	-		PFR28_05153	0.52	+2.1
5,903,599	-		PFR28_05153	0.52	+2.3
5,903,671	+		PFR28_05153	0.59	+1.4
5,903,671	+		PFR28_05153	0.59	+0.3
5,903,671	+		PFR28_05153	0.59	+3.5
5,903,671	+		PFR28_05153	0.59	+0.5
5,903,671	+		PFR28_05153	0.59	-1.3
5,903,671	+		PFR28_05153	0.59	-0.8
5,903,671	+		PFR28_05153	0.59	-0.3
5,903,671	+		PFR28_05153	0.59	+2.5
5,903,672	-		PFR28_05153	0.59	-1.2
5,903,672	-		PFR28_05153	0.59	-0.3
5,903,672	-		PFR28_05153	0.59	+0.4
5,903,676	+		PFR28_05153	0.59	-1.1
5,903,676	+		PFR28_05153	0.59	-1.1
5,903,677	-		PFR28_05153	0.59	+2.2
5,903,811	+		PFR28_05153	0.71	+0.3
5,903,811	+		PFR28_05153	0.71	-0.8
5,903,811	+		PFR28_05153	0.71	+0.2
5,903,826	+		PFR28_05153	0.72	+0.8
5,903,826	+		PFR28_05153	0.72	-0.4
5,903,826	+		PFR28_05153	0.72	+0.3
5,903,826	+		PFR28_05153	0.72	-0.5
5,903,826	+		PFR28_05153	0.72	+0.0
5,903,826	+		PFR28_05153	0.72	+2.7
5,903,826	+		PFR28_05153	0.72	+1.0
5,903,827	-		PFR28_05153	0.72	+2.3
5,903,827	-		PFR28_05153	0.72	+2.7
5,903,827	-		PFR28_05153	0.72	-0.4
5,903,917	-		PFR28_05153	0.80	-2.8
5,903,925	+		PFR28_05153	0.81	-0.9
5,903,925	+		PFR28_05153	0.81	-1.1
5,903,926	-		PFR28_05153	0.81	-1.7
5,903,926	-		PFR28_05153	0.81	+0.7
5,903,931	+		PFR28_05153	0.82	+1.8
5,903,931	+		PFR28_05153	0.82	-1.3
5,903,931	+		PFR28_05153	0.82	-1.4
5,903,931	+		PFR28_05153	0.82	+0.1
5,903,932	-		PFR28_05153	0.82	+1.5
5,903,932	-		PFR28_05153	0.82	+0.4
5,903,932	-		PFR28_05153	0.82	-1.6
5,903,932	-		PFR28_05153	0.82	+0.1
5,903,932	-		PFR28_05153	0.82	+0.7
5,904,081	+				+1.3
5,904,081	+				-0.1
5,904,081	+				-0.6
5,904,081	+				+2.0
5,904,081	+				+0.9
5,904,082	-				-1.4
5,904,082	-				-2.1
5,904,082	-				+2.4
5,904,090	+				-3.0
5,904,091	-				-1.2
5,904,114	+				+1.7
5,904,114	+				+1.1
5,904,114	+				+0.8
5,904,114	+				+1.0
5,904,114	+				+0.1
5,904,114	+				+0.6
5,904,115	-				-2.7
5,904,115	-				+1.0
5,904,115	-				-1.2
5,904,115	-				+0.8
5,904,115	-				-0.2
5,904,115	-				+0.9
5,904,138	+				-0.5
5,904,138	+				-0.8
5,904,138	+				-1.2
5,904,138	+				+2.6
5,904,138	+				+0.0
5,904,138	+				+3.1
5,904,138	+				-0.6
5,904,138	+				-0.9
5,904,139	-				+0.6
5,904,139	-				+0.9
5,904,139	-				+5.8
5,904,139	-				+1.5
5,904,139	-				-1.6
5,904,139	-				+0.1
5,904,139	-				+0.8
5,904,231	-				-1.1
5,904,231	-				+1.4
5,904,231	-				-1.1
5,904,238	+				-2.4
5,904,239	-				-1.1
5,904,310	+				+1.3
5,904,311	-				-0.2
5,904,311	-				+0.9
5,904,311	-				-1.5
5,904,311	-				+1.0
5,904,311	-				+0.9
5,904,356	+				-1.5
5,904,356	+				+0.1
5,904,356	+				-1.8
5,904,356	+				-0.2
5,904,356	+				-1.6
5,904,356	+				+0.6
5,904,357	-				-0.7
5,904,357	-				+2.5
5,904,357	-				-0.8
5,904,389	+				-1.1
5,904,389	+				+0.3
5,904,389	+				-1.2
5,904,390	-				+0.1
5,904,390	-				-0.9
5,904,390	-				-0.7
5,904,431	+		PFR28_05154	0.14	-1.2
5,904,431	+		PFR28_05154	0.14	+1.2
5,904,432	-		PFR28_05154	0.14	-1.3
5,904,432	-		PFR28_05154	0.14	+0.2
5,904,432	-		PFR28_05154	0.14	-1.4
5,904,432	-		PFR28_05154	0.14	+0.3
5,904,432	-		PFR28_05154	0.14	+1.0
5,904,432	-		PFR28_05154	0.14	-2.7
5,904,432	-		PFR28_05154	0.14	-1.8
5,904,432	-		PFR28_05154	0.14	+2.1
5,904,432	-		PFR28_05154	0.14	+0.8
5,904,446	+		PFR28_05154	0.16	-0.8
5,904,447	-		PFR28_05154	0.16	+1.0
5,904,479	+		PFR28_05154	0.19	-1.6
5,904,480	-		PFR28_05154	0.19	+1.6
5,904,505	-		PFR28_05154	0.22	+1.1
5,904,549	+		PFR28_05154	0.27	+0.7
5,904,550	-		PFR28_05154	0.27	-0.9
5,904,551	+		PFR28_05154	0.27	-0.5
5,904,552	-		PFR28_05154	0.27	-0.7
5,904,552	-		PFR28_05154	0.27	-2.0
5,904,579	-		PFR28_05154	0.30	+0.8
5,904,631	+		PFR28_05154	0.36	+2.1
5,904,631	+		PFR28_05154	0.36	+0.3
5,904,653	+		PFR28_05154	0.38	-1.4
5,904,653	+		PFR28_05154	0.38	-2.5
5,904,653	+		PFR28_05154	0.38	-1.6
5,904,653	+		PFR28_05154	0.38	+0.5
5,904,653	+		PFR28_05154	0.38	+0.2
5,904,653	+		PFR28_05154	0.38	-0.5
5,904,653	+		PFR28_05154	0.38	-0.4
5,904,653	+		PFR28_05154	0.38	-0.7
5,904,654	-		PFR28_05154	0.38	+3.6
5,904,654	-		PFR28_05154	0.38	-0.2
5,904,654	-		PFR28_05154	0.38	-0.2
5,904,654	-		PFR28_05154	0.38	-0.8
5,904,654	-		PFR28_05154	0.38	+1.8
5,904,654	-		PFR28_05154	0.38	-3.1
5,904,752	+		PFR28_05154	0.49	+1.3
5,904,753	-		PFR28_05154	0.49	+3.3
5,904,806	+		PFR28_05154	0.55	+1.6
5,904,806	+		PFR28_05154	0.55	-2.6
5,904,806	+		PFR28_05154	0.55	-0.5
5,904,806	+		PFR28_05154	0.55	+1.2
5,904,806	+		PFR28_05154	0.55	-1.4
5,904,806	+		PFR28_05154	0.55	+0.7
5,904,806	+		PFR28_05154	0.55	+2.0
5,904,806	+		PFR28_05154	0.55	+1.5
5,904,806	+		PFR28_05154	0.55	+0.9
5,904,807	-		PFR28_05154	0.55	-2.1
5,904,807	-		PFR28_05154	0.55	+4.0
5,904,807	-		PFR28_05154	0.55	-1.8
5,904,807	-		PFR28_05154	0.55	-0.7
5,904,807	-		PFR28_05154	0.55	+1.9
5,904,818	+		PFR28_05154	0.56	+1.7
5,904,818	+		PFR28_05154	0.56	+1.2
5,904,818	+		PFR28_05154	0.56	-0.5
5,904,818	+		PFR28_05154	0.56	+2.4
5,904,818	+		PFR28_05154	0.56	+0.4
5,904,819	-		PFR28_05154	0.57	+0.2
5,904,819	-		PFR28_05154	0.57	+2.7
5,904,819	-		PFR28_05154	0.57	+1.4
5,904,819	-		PFR28_05154	0.57	+0.5
5,904,908	+		PFR28_05154	0.66	+1.9
5,904,908	+		PFR28_05154	0.66	+0.3
5,904,908	+		PFR28_05154	0.66	+0.6
5,904,909	-		PFR28_05154	0.66	+0.4
5,904,968	+		PFR28_05154	0.73	-2.6
5,904,969	-		PFR28_05154	0.73	-1.2
5,904,969	-		PFR28_05154	0.73	+1.7
5,904,986	+		PFR28_05154	0.75	+1.1
5,904,986	+		PFR28_05154	0.75	-0.5
5,904,987	-		PFR28_05154	0.75	+2.9
5,904,987	-		PFR28_05154	0.75	+0.5
5,904,987	-		PFR28_05154	0.75	+0.2
5,904,987	-		PFR28_05154	0.75	+0.6
5,904,987	-		PFR28_05154	0.75	-2.9
5,904,987	-		PFR28_05154	0.75	-0.3
5,904,987	-		PFR28_05154	0.75	-1.4
5,905,124	+		PFR28_05154	0.90	+1.9
5,905,124	+		PFR28_05154	0.90	-1.1