Strain Fitness in Pseudomonas sp. RS175 around PFR28_05152

Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
5,900,507	+		PFR28_05151	0.54	+0.3
5,900,507	+		PFR28_05151	0.54	-0.5
5,900,623	+		PFR28_05151	0.62	-0.2
5,900,623	+		PFR28_05151	0.62	+1.6
5,900,788	+		PFR28_05151	0.73	-0.8
5,900,788	+		PFR28_05151	0.73	+0.0
5,900,788	+		PFR28_05151	0.73	+4.2
5,900,788	+		PFR28_05151	0.73	+0.2
5,900,789	-		PFR28_05151	0.73	+2.1
5,900,789	-		PFR28_05151	0.73	+1.1
5,900,789	-		PFR28_05151	0.73	+1.2
5,900,789	-		PFR28_05151	0.73	+0.6
5,900,789	-		PFR28_05151	0.73	+0.9
5,900,791	+		PFR28_05151	0.73	+1.2
5,900,791	+		PFR28_05151	0.73	-1.8
5,900,791	+		PFR28_05151	0.73	-1.3
5,900,791	+		PFR28_05151	0.73	+1.3
5,900,791	+		PFR28_05151	0.73	-0.2
5,900,791	+		PFR28_05151	0.73	-0.6
5,900,791	+		PFR28_05151	0.73	+0.2
5,900,791	+		PFR28_05151	0.73	+3.0
5,900,791	+		PFR28_05151	0.73	+0.5
5,900,791	+		PFR28_05151	0.73	-2.4
5,900,791	+		PFR28_05151	0.73	+2.2
5,900,791	+		PFR28_05151	0.73	-0.6
5,900,791	+		PFR28_05151	0.73	+3.0
5,900,791	+		PFR28_05151	0.73	+1.7
5,900,791	+		PFR28_05151	0.73	-0.9
5,900,791	+		PFR28_05151	0.73	+1.3
5,900,792	-		PFR28_05151	0.74	-1.4
5,900,792	-		PFR28_05151	0.74	-0.6
5,900,792	-		PFR28_05151	0.74	+0.7
5,900,792	-		PFR28_05151	0.74	-0.1
5,900,792	-		PFR28_05151	0.74	-0.7
5,900,792	-		PFR28_05151	0.74	+2.9
5,900,792	-		PFR28_05151	0.74	-1.8
5,900,792	-		PFR28_05151	0.74	-1.3
5,900,792	-		PFR28_05151	0.74	+0.5
5,900,792	-		PFR28_05151	0.74	-1.1
5,900,792	-		PFR28_05151	0.74	+1.1
5,900,866	+		PFR28_05151	0.78	-1.0
5,900,866	+		PFR28_05151	0.78	-0.3
5,900,866	+		PFR28_05151	0.78	+1.1
5,900,866	+		PFR28_05151	0.78	-1.7
5,900,867	-		PFR28_05151	0.79	-0.7
5,900,867	-		PFR28_05151	0.79	-1.2
5,900,867	-		PFR28_05151	0.79	-1.7
5,900,867	-		PFR28_05151	0.79	+0.6
5,900,867	-		PFR28_05151	0.79	-0.9
5,900,867	-		PFR28_05151	0.79	+0.2
5,900,878	+		PFR28_05151	0.79	-0.6
5,900,879	-		PFR28_05151	0.79	+1.1
5,900,879	-		PFR28_05151	0.79	-0.4
5,901,112	+				-1.3
5,901,112	+				+0.4
5,901,112	+				+0.1
5,901,112	+				+0.8
5,901,112	+				-1.3
5,901,112	+				+1.7
5,901,112	+				-0.4
5,901,112	+				-2.7
5,901,113	-				-0.7
5,901,113	-				-0.9
5,901,113	-				-0.9
5,901,113	-				+1.9
5,901,113	-				-0.3
5,901,114	+				-1.8
5,901,114	+				-1.9
5,901,114	+				-0.8
5,901,114	+				+0.6
5,901,115	-				-3.1
5,901,132	+				-0.3
5,901,132	+				-1.5
5,901,142	+				+1.1
5,901,142	+				+1.7
5,901,142	+				-2.3
5,901,319	+				-2.9
5,901,319	+				+0.2
5,901,319	+				+0.4
5,901,319	+				+1.5
5,901,319	+				+0.2
5,901,378	+				-0.4
5,901,378	+				+1.0
5,901,379	-				+1.6
5,901,695	+		PFR28_05152	0.26	+0.7
5,901,695	+		PFR28_05152	0.26	-0.2
5,901,695	+		PFR28_05152	0.26	-2.3
5,901,695	+		PFR28_05152	0.26	+0.7
5,901,696	-		PFR28_05152	0.26	-0.3
5,901,696	-		PFR28_05152	0.26	+3.1
5,901,851	-		PFR28_05152	0.39	+1.3
5,901,851	-		PFR28_05152	0.39	-1.4
5,901,851	-		PFR28_05152	0.39	+2.2
5,901,911	+		PFR28_05152	0.43	-0.9
5,901,911	+		PFR28_05152	0.43	-1.7
5,901,911	+		PFR28_05152	0.43	-0.8
5,901,911	+		PFR28_05152	0.43	-1.9
5,901,912	-		PFR28_05152	0.43	+1.7
5,901,912	-		PFR28_05152	0.43	-2.1
5,902,067	+		PFR28_05152	0.55	-0.8
5,902,067	+		PFR28_05152	0.55	-0.5
5,902,067	+		PFR28_05152	0.55	-1.7
5,902,068	-		PFR28_05152	0.55	+0.1
5,902,068	-		PFR28_05152	0.55	+1.7
5,902,118	+		PFR28_05152	0.59	-2.3
5,902,118	+		PFR28_05152	0.59	-0.1
5,902,118	+		PFR28_05152	0.59	+0.1
5,902,118	+		PFR28_05152	0.59	+2.0
5,902,119	-		PFR28_05152	0.59	+0.8
5,902,119	-		PFR28_05152	0.59	+1.9
5,902,119	-		PFR28_05152	0.59	+0.8
5,902,119	-		PFR28_05152	0.59	+1.2
5,902,119	-		PFR28_05152	0.59	+1.6
5,902,121	+		PFR28_05152	0.60	-3.3
5,902,121	+		PFR28_05152	0.60	+2.3
5,902,122	-		PFR28_05152	0.60	+1.0
5,902,122	-		PFR28_05152	0.60	-1.9
5,902,122	-		PFR28_05152	0.60	+1.5
5,902,167	+		PFR28_05152	0.63	-0.2
5,902,168	-		PFR28_05152	0.63	+0.0
5,902,262	-		PFR28_05152	0.71	+1.6
5,902,320	-		PFR28_05152	0.75	-1.2
5,902,322	+		PFR28_05152	0.75	-0.0
5,902,323	-		PFR28_05152	0.75	-1.8
5,902,323	-		PFR28_05152	0.75	+1.3
5,902,323	-		PFR28_05152	0.75	-1.8
5,902,331	+		PFR28_05152	0.76	-1.8
5,902,332	-		PFR28_05152	0.76	+0.9
5,902,375	-		PFR28_05152	0.79	-1.3
5,902,375	-		PFR28_05152	0.79	-0.2
5,902,468	+		PFR28_05152	0.87	+0.1
5,902,496	+		PFR28_05152	0.89	-1.8
5,902,497	-		PFR28_05152	0.89	-0.4
5,902,497	-		PFR28_05152	0.89	-2.5
5,902,583	+				+3.8
5,902,583	+				+2.5
5,902,584	-				+2.5
5,902,584	-				-1.9
5,902,584	-				+1.7
5,902,604	+				+1.8
5,902,685	+				-0.3
5,902,686	-				+0.1
5,902,707	+				-0.8
5,902,725	-				+1.9
5,902,752	+				+0.3
5,902,752	+				+1.0
5,902,753	-				-0.4
5,902,811	+				-1.6
5,902,811	+				-0.5
5,902,812	-				+0.0
5,902,812	-				+0.2
5,902,812	-				+1.0
5,902,812	-				-0.2
5,902,898	+				+0.7
5,902,899	-				-0.5
5,902,957	+				+0.1
5,902,957	+				-1.0
5,902,957	+				-1.7
5,902,957	+				+1.2
5,902,957	+				+2.6
5,902,957	+				-0.1
5,902,957	+				-1.0
5,902,957	+				-1.5
5,902,958	-				-0.8
5,902,958	-				-1.9
5,902,958	-				-3.4
5,902,958	-				-0.4
5,902,958	-				+0.2
5,902,958	-				-0.2
5,902,958	-				+0.6
5,902,958	-				+0.8
5,902,958	-				+0.6
5,902,958	-				+1.1
5,902,979	+				-2.7
5,902,980	-				+2.0
5,903,051	+				-2.3
5,903,145	+		PFR28_05153	0.12	+0.9
5,903,145	+		PFR28_05153	0.12	-0.8
5,903,145	+		PFR28_05153	0.12	-0.9
5,903,145	+		PFR28_05153	0.12	+4.1
5,903,145	+		PFR28_05153	0.12	+2.5
5,903,145	+		PFR28_05153	0.12	+0.2
5,903,145	+		PFR28_05153	0.12	+0.7
5,903,145	+		PFR28_05153	0.12	+0.7
5,903,145	+		PFR28_05153	0.12	+1.1
5,903,145	+		PFR28_05153	0.12	-0.7
5,903,145	+		PFR28_05153	0.12	-0.7
5,903,145	+		PFR28_05153	0.12	-1.5
5,903,145	+		PFR28_05153	0.12	-2.2
5,903,146	-		PFR28_05153	0.12	-1.5
5,903,146	-		PFR28_05153	0.12	+0.6
5,903,146	-		PFR28_05153	0.12	-0.3
5,903,146	-		PFR28_05153	0.12	+0.3
5,903,146	-		PFR28_05153	0.12	+0.9
5,903,146	-		PFR28_05153	0.12	-2.7
5,903,146	-		PFR28_05153	0.12	-0.5
5,903,146	-		PFR28_05153	0.12	+0.6
5,903,146	-		PFR28_05153	0.12	+0.3
5,903,146	-		PFR28_05153	0.12	+0.4
5,903,146	-		PFR28_05153	0.12	+1.1
5,903,146	-		PFR28_05153	0.12	-0.0
5,903,146	-		PFR28_05153	0.12	+0.3
5,903,146	-		PFR28_05153	0.12	-1.1
5,903,146	-		PFR28_05153	0.12	+0.3
5,903,146	-		PFR28_05153	0.12	+1.8
5,903,278	+		PFR28_05153	0.24	-0.9
5,903,349	+		PFR28_05153	0.30	-0.2
5,903,350	-		PFR28_05153	0.30	-0.4
5,903,350	-		PFR28_05153	0.30	-0.4
5,903,350	-		PFR28_05153	0.30	+1.1
5,903,475	+		PFR28_05153	0.41	-2.8
5,903,475	+		PFR28_05153	0.41	-1.1
5,903,475	+		PFR28_05153	0.41	-0.9
5,903,475	+		PFR28_05153	0.41	-0.4
5,903,476	-		PFR28_05153	0.42	-2.1
5,903,476	-		PFR28_05153	0.42	+1.3
5,903,476	-		PFR28_05153	0.42	-1.9
5,903,532	+		PFR28_05153	0.46	+1.1
5,903,532	+		PFR28_05153	0.46	+0.7
5,903,532	+		PFR28_05153	0.46	-1.0
5,903,532	+		PFR28_05153	0.46	-0.4
5,903,532	+		PFR28_05153	0.46	+1.5
5,903,532	+		PFR28_05153	0.46	+3.5
5,903,532	+		PFR28_05153	0.46	+0.1
5,903,532	+		PFR28_05153	0.46	-1.4
5,903,532	+		PFR28_05153	0.46	-1.7
5,903,533	-		PFR28_05153	0.47	+2.7
5,903,533	-		PFR28_05153	0.47	-2.4
5,903,533	-		PFR28_05153	0.47	+1.6
5,903,533	-		PFR28_05153	0.47	+2.6
5,903,533	-		PFR28_05153	0.47	-1.7
5,903,533	-		PFR28_05153	0.47	+1.2
5,903,533	-		PFR28_05153	0.47	+0.4
5,903,598	+		PFR28_05153	0.52	+0.7
5,903,598	+		PFR28_05153	0.52	-0.3
5,903,599	-		PFR28_05153	0.52	+2.1
5,903,599	-		PFR28_05153	0.52	+2.3