Strain Fitness in Pseudomonas sp. RS175 around PFR28_05149

Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
5,896,150	-		PFR28_05147	0.85	-0.3
5,896,212	+				-0.7
5,896,212	+				-1.4
5,896,212	+				-0.5
5,896,212	+				-0.7
5,896,212	+				-0.1
5,896,212	+				+1.6
5,896,212	+				+0.3
5,896,213	-				+0.5
5,896,213	-				-1.8
5,896,213	-				-0.4
5,896,213	-				-0.5
5,896,213	-				-1.8
5,896,213	-				-0.3
5,896,213	-				-2.0
5,896,213	-				-1.0
5,896,213	-				+1.6
5,896,213	-				-0.8
5,896,213	-				+2.3
5,896,213	-				-1.1
5,896,213	-				+4.1
5,896,215	+				-1.1
5,896,216	-				+0.9
5,896,257	+				+1.6
5,897,185	+				-1.1
5,897,185	+				+2.2
5,897,185	+				-0.1
5,897,185	+				-2.3
5,897,186	-				+1.2
5,897,186	-				-1.2
5,897,186	-				+1.0
5,897,186	-				-1.3
5,897,186	-				+1.3
5,897,207	+				-0.5
5,897,207	+				+2.3
5,897,207	+				+0.4
5,897,207	+				-0.4
5,897,207	+				+2.8
5,897,207	+				-3.4
5,897,208	-				+2.0
5,897,208	-				+0.5
5,897,208	-				+1.7
5,897,208	-				-0.8
5,897,208	-				-1.9
5,897,208	-				+1.9
5,897,295	+		PFR28_05149	0.12	-0.2
5,897,295	+		PFR28_05149	0.12	-0.3
5,897,296	-		PFR28_05149	0.12	+1.1
5,897,296	-		PFR28_05149	0.12	+0.8
5,897,296	-		PFR28_05149	0.12	+0.1
5,897,296	-		PFR28_05149	0.12	-1.9
5,897,471	+		PFR28_05149	0.26	-0.7
5,897,471	+		PFR28_05149	0.26	-1.2
5,897,501	-		PFR28_05149	0.29	-0.3
5,897,918	+		PFR28_05149	0.63	+1.2
5,897,919	-		PFR28_05149	0.63	-1.7
5,898,002	-		PFR28_05149	0.70	-0.4
5,898,080	+		PFR28_05149	0.76	-0.9
5,898,081	-		PFR28_05149	0.76	+0.2
5,898,081	-		PFR28_05149	0.76	+0.0
5,898,081	-		PFR28_05149	0.76	-0.4
5,898,081	-		PFR28_05149	0.76	-0.3
5,898,081	-		PFR28_05149	0.76	+1.8
5,898,081	-		PFR28_05149	0.76	-1.1
5,898,281	+				+0.8
5,898,281	+				+0.7
5,898,281	+				-1.3
5,898,282	-				+0.3
5,898,282	-				+3.1
5,898,318	-				-2.6
5,898,361	+				+0.1
5,898,361	+				+0.8
5,898,361	+				+0.9
5,898,361	+				-0.0
5,898,361	+				-1.1
5,898,361	+				+2.4
5,898,361	+				+2.5
5,898,361	+				-2.1
5,898,361	+				-1.4
5,898,362	-				-0.7
5,898,362	-				-0.8
5,898,362	-				+2.0
5,898,362	-				+1.9
5,898,362	-				-0.2
5,898,375	+				-2.3
5,898,375	+				-1.4
5,898,376	-				+2.0
5,898,376	-				-0.6
5,898,376	-				-0.1
5,898,376	-				+1.1
5,898,376	-				+0.0
5,898,376	-				+2.3
5,898,500	+				-0.8
5,898,500	+				-0.8
5,898,500	+				-0.2
5,898,500	+				+0.5
5,898,501	-				-1.8
5,898,501	-				-0.2
5,898,551	-				+0.8
5,898,551	-				+0.7
5,898,551	-				+1.2
5,898,580	+				-0.1
5,898,580	+				-3.7
5,898,580	+				+0.3
5,898,580	+				+2.3
5,898,581	-				-0.6
5,898,581	-				-0.3
5,898,581	-				+1.2
5,898,613	+				-2.0
5,898,664	+				-0.6
5,898,665	-				-1.5
5,898,665	-				+1.6
5,898,709	+		PFR28_05150	0.11	+0.2
5,898,709	+		PFR28_05150	0.11	-1.2
5,898,709	+		PFR28_05150	0.11	-2.2
5,898,709	+		PFR28_05150	0.11	-1.2
5,898,709	+		PFR28_05150	0.11	+1.2
5,898,709	+		PFR28_05150	0.11	+1.4
5,898,709	+		PFR28_05150	0.11	-0.2
5,898,710	-		PFR28_05150	0.11	-1.5
5,898,710	-		PFR28_05150	0.11	-0.8
5,898,710	-		PFR28_05150	0.11	-0.4
5,898,710	-		PFR28_05150	0.11	+1.2
5,898,710	-		PFR28_05150	0.11	+0.6
5,898,804	+		PFR28_05150	0.21	+1.7
5,898,839	+		PFR28_05150	0.25	+1.0
5,898,839	+		PFR28_05150	0.25	-1.7
5,898,839	+		PFR28_05150	0.25	+1.2
5,898,839	+		PFR28_05150	0.25	+1.5
5,898,839	+		PFR28_05150	0.25	+1.6
5,898,839	+		PFR28_05150	0.25	-0.0
5,898,839	+		PFR28_05150	0.25	+1.5
5,898,839	+		PFR28_05150	0.25	-2.8
5,898,839	+		PFR28_05150	0.25	-1.9
5,898,839	+		PFR28_05150	0.25	+0.8
5,898,839	+		PFR28_05150	0.25	+0.9
5,898,839	+		PFR28_05150	0.25	+0.7
5,898,839	+		PFR28_05150	0.25	+1.5
5,898,839	+		PFR28_05150	0.25	+0.8
5,898,839	+		PFR28_05150	0.25	-0.9
5,898,839	+		PFR28_05150	0.25	-1.2
5,898,839	+		PFR28_05150	0.25	-0.5
5,898,839	+		PFR28_05150	0.25	+1.3
5,898,839	+		PFR28_05150	0.25	+0.5
5,898,839	+		PFR28_05150	0.25	-2.0
5,898,839	+		PFR28_05150	0.25	-2.2
5,898,839	+		PFR28_05150	0.25	+0.8
5,898,839	+		PFR28_05150	0.25	+2.2
5,898,840	-		PFR28_05150	0.25	+1.7
5,898,840	-		PFR28_05150	0.25	+1.1
5,898,840	-		PFR28_05150	0.25	+0.5
5,898,840	-		PFR28_05150	0.25	+0.2
5,898,840	-		PFR28_05150	0.25	+1.1
5,898,840	-		PFR28_05150	0.25	-0.5
5,898,840	-		PFR28_05150	0.25	+0.6
5,898,840	-		PFR28_05150	0.25	-2.0
5,898,840	-		PFR28_05150	0.25	-0.3
5,898,840	-		PFR28_05150	0.25	+1.2
5,898,840	-		PFR28_05150	0.25	+2.3
5,898,840	-		PFR28_05150	0.25	+2.6
5,898,840	-		PFR28_05150	0.25	-2.7
5,898,840	-		PFR28_05150	0.25	-2.1
5,898,840	-		PFR28_05150	0.25	-0.9
5,898,840	-		PFR28_05150	0.25	-0.8
5,898,840	-		PFR28_05150	0.25	+0.6
5,898,840	-		PFR28_05150	0.25	+1.3
5,898,840	-		PFR28_05150	0.25	-2.6
5,898,840	-		PFR28_05150	0.25	-1.6
5,898,840	-		PFR28_05150	0.25	+2.3
5,898,840	-		PFR28_05150	0.25	+1.5
5,898,840	-		PFR28_05150	0.25	-0.4
5,898,840	-		PFR28_05150	0.25	-2.3
5,898,841	+		PFR28_05150	0.25	+0.7
5,898,841	+		PFR28_05150	0.25	+1.2
5,898,841	+		PFR28_05150	0.25	-1.4
5,898,841	+		PFR28_05150	0.25	+1.2
5,898,841	+		PFR28_05150	0.25	+1.1
5,898,841	+		PFR28_05150	0.25	+1.0
5,898,841	+		PFR28_05150	0.25	-3.0
5,898,841	+		PFR28_05150	0.25	-2.7
5,898,841	+		PFR28_05150	0.25	-0.9
5,898,841	+		PFR28_05150	0.25	-0.1
5,898,841	+		PFR28_05150	0.25	+1.6
5,898,841	+		PFR28_05150	0.25	+1.5
5,898,841	+		PFR28_05150	0.25	-0.6
5,898,841	+		PFR28_05150	0.25	+1.1
5,898,841	+		PFR28_05150	0.25	-0.8
5,898,841	+		PFR28_05150	0.25	+0.9
5,898,841	+		PFR28_05150	0.25	+1.9
5,898,842	-		PFR28_05150	0.25	+0.8
5,898,842	-		PFR28_05150	0.25	-0.5
5,898,842	-		PFR28_05150	0.25	+0.9
5,898,842	-		PFR28_05150	0.25	+0.7
5,898,842	-		PFR28_05150	0.25	-1.7
5,898,842	-		PFR28_05150	0.25	-2.2
5,898,842	-		PFR28_05150	0.25	-1.0
5,898,842	-		PFR28_05150	0.25	-0.7
5,898,842	-		PFR28_05150	0.25	-1.5
5,898,842	-		PFR28_05150	0.25	+2.0
5,898,842	-		PFR28_05150	0.25	+2.0
5,898,842	-		PFR28_05150	0.25	-0.7
5,898,842	-		PFR28_05150	0.25	+1.5
5,898,842	-		PFR28_05150	0.25	+2.8
5,898,842	-		PFR28_05150	0.25	+0.1
5,898,842	-		PFR28_05150	0.25	-1.4
5,898,842	-		PFR28_05150	0.25	+1.2
5,898,842	-		PFR28_05150	0.25	-0.8
5,898,842	-		PFR28_05150	0.25	-0.4
5,898,842	-		PFR28_05150	0.25	-0.8
5,898,842	-		PFR28_05150	0.25	-1.6
5,898,842	-		PFR28_05150	0.25	-2.0
5,898,842	-		PFR28_05150	0.25	+0.7
5,898,868	+		PFR28_05150	0.28	-1.1
5,898,868	+		PFR28_05150	0.28	-1.4
5,898,868	+		PFR28_05150	0.28	+1.3
5,898,868	+		PFR28_05150	0.28	+0.1
5,898,868	+		PFR28_05150	0.28	+0.8
5,898,869	-		PFR28_05150	0.28	-2.9
5,898,869	-		PFR28_05150	0.28	-2.0
5,898,887	-		PFR28_05150	0.30	+0.7
5,899,075	+		PFR28_05150	0.51	-2.1
5,899,076	-		PFR28_05150	0.51	-2.3
5,899,076	-		PFR28_05150	0.51	+1.3
5,899,076	-		PFR28_05150	0.51	-2.1
5,899,246	+		PFR28_05150	0.70	-0.5
5,899,246	+		PFR28_05150	0.70	-1.4
5,899,246	+		PFR28_05150	0.70	+1.6
5,899,247	-		PFR28_05150	0.70	+0.8
5,899,258	+		PFR28_05150	0.71	-2.9
5,899,258	+		PFR28_05150	0.71	+1.1
5,899,296	+		PFR28_05150	0.75	+2.1
5,899,297	-		PFR28_05150	0.75	-2.8
5,899,309	+		PFR28_05150	0.77	-0.1
5,899,309	+		PFR28_05150	0.77	-0.4
5,899,309	+		PFR28_05150	0.77	-0.8
5,899,310	-		PFR28_05150	0.77	-0.8