Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04621 and PFR28_04622 are separated by 172 nucleotides PFR28_04622 and PFR28_04623 are separated by 63 nucleotides PFR28_04623 and PFR28_04624 are separated by 74 nucleotides
PFR28_04621: PFR28_04621 - High-affinity zinc uptake system protein ZnuA, at 5,276,258 to 5,277,184
_04621
PFR28_04622: PFR28_04622 - Homoserine kinase, at 5,277,357 to 5,278,307
_04622
PFR28_04623: PFR28_04623 - hypothetical protein, at 5,278,371 to 5,278,658
_04623
PFR28_04624: PFR28_04624 - DNA polymerase I, at 5,278,733 to 5,281,501
_04624
Position (kb) 5277
5278
5279 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5276.438 kb on + strand, within PFR28_04621 at 5276.439 kb on - strand, within PFR28_04621 at 5276.439 kb on - strand, within PFR28_04621 at 5276.460 kb on + strand, within PFR28_04621 at 5276.478 kb on + strand, within PFR28_04621 at 5276.478 kb on + strand, within PFR28_04621 at 5276.479 kb on - strand, within PFR28_04621 at 5276.479 kb on - strand, within PFR28_04621 at 5276.489 kb on + strand, within PFR28_04621 at 5276.490 kb on - strand, within PFR28_04621 at 5276.858 kb on + strand, within PFR28_04621 at 5276.858 kb on + strand, within PFR28_04621 at 5276.859 kb on - strand, within PFR28_04621 at 5276.859 kb on - strand, within PFR28_04621 at 5276.859 kb on - strand, within PFR28_04621 at 5276.859 kb on - strand, within PFR28_04621 at 5276.859 kb on - strand, within PFR28_04621 at 5276.859 kb on - strand, within PFR28_04621 at 5276.859 kb on - strand, within PFR28_04621 at 5276.885 kb on + strand, within PFR28_04621 at 5276.900 kb on + strand, within PFR28_04621 at 5276.900 kb on + strand, within PFR28_04621 at 5276.900 kb on + strand, within PFR28_04621 at 5276.900 kb on + strand, within PFR28_04621 at 5276.900 kb on + strand, within PFR28_04621 at 5276.900 kb on + strand, within PFR28_04621 at 5276.901 kb on - strand, within PFR28_04621 at 5276.901 kb on - strand, within PFR28_04621 at 5276.901 kb on - strand, within PFR28_04621 at 5276.901 kb on - strand, within PFR28_04621 at 5277.101 kb on + strand at 5277.102 kb on - strand at 5277.102 kb on - strand at 5277.103 kb on + strand at 5277.103 kb on + strand at 5277.104 kb on - strand at 5277.180 kb on + strand at 5277.180 kb on + strand at 5277.180 kb on + strand at 5277.180 kb on + strand at 5277.181 kb on - strand at 5277.181 kb on - strand at 5277.181 kb on - strand at 5277.181 kb on - strand at 5277.181 kb on - strand at 5277.181 kb on - strand at 5277.181 kb on - strand at 5277.182 kb on + strand at 5277.182 kb on + strand at 5277.182 kb on + strand at 5277.182 kb on + strand at 5277.183 kb on - strand at 5277.183 kb on - strand at 5277.278 kb on + strand at 5277.279 kb on - strand at 5277.279 kb on - strand at 5277.279 kb on - strand at 5277.313 kb on + strand at 5277.314 kb on - strand at 5277.314 kb on - strand at 5277.314 kb on - strand at 5277.314 kb on - strand at 5277.314 kb on - strand at 5277.358 kb on + strand at 5277.358 kb on + strand at 5277.358 kb on + strand at 5277.359 kb on - strand at 5278.312 kb on - strand at 5278.325 kb on - strand at 5278.465 kb on + strand, within PFR28_04623 at 5278.465 kb on + strand, within PFR28_04623 at 5278.465 kb on + strand, within PFR28_04623 at 5278.465 kb on + strand, within PFR28_04623 at 5278.466 kb on - strand, within PFR28_04623 at 5278.501 kb on + strand, within PFR28_04623 at 5278.501 kb on + strand, within PFR28_04623 at 5278.647 kb on + strand at 5278.647 kb on + strand at 5278.647 kb on + strand at 5278.647 kb on + strand at 5278.647 kb on + strand at 5278.648 kb on - strand at 5278.648 kb on - strand at 5278.648 kb on - strand at 5278.648 kb on - strand at 5278.652 kb on + strand at 5278.652 kb on + strand at 5278.652 kb on + strand at 5278.652 kb on + strand at 5278.652 kb on + strand at 5278.652 kb on + strand at 5278.652 kb on + strand at 5278.652 kb on + strand at 5278.652 kb on + strand at 5278.653 kb on - strand at 5278.653 kb on - strand at 5278.653 kb on - strand at 5278.653 kb on - strand at 5278.653 kb on - strand at 5278.653 kb on - strand at 5278.662 kb on - strand at 5278.662 kb on - strand at 5278.698 kb on + strand at 5278.698 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct remove 5,276,438 + PFR28_04621 0.19 +2.0 5,276,439 - PFR28_04621 0.20 +0.5 5,276,439 - PFR28_04621 0.20 -2.0 5,276,460 + PFR28_04621 0.22 -1.0 5,276,478 + PFR28_04621 0.24 +1.8 5,276,478 + PFR28_04621 0.24 -0.5 5,276,479 - PFR28_04621 0.24 -0.4 5,276,479 - PFR28_04621 0.24 -1.4 5,276,489 + PFR28_04621 0.25 +0.9 5,276,490 - PFR28_04621 0.25 +3.8 5,276,858 + PFR28_04621 0.65 -3.0 5,276,858 + PFR28_04621 0.65 -0.5 5,276,859 - PFR28_04621 0.65 -2.7 5,276,859 - PFR28_04621 0.65 -0.0 5,276,859 - PFR28_04621 0.65 -1.0 5,276,859 - PFR28_04621 0.65 -0.9 5,276,859 - PFR28_04621 0.65 +1.1 5,276,859 - PFR28_04621 0.65 -0.1 5,276,859 - PFR28_04621 0.65 -2.2 5,276,885 + PFR28_04621 0.68 -1.6 5,276,900 + PFR28_04621 0.69 -0.2 5,276,900 + PFR28_04621 0.69 -1.1 5,276,900 + PFR28_04621 0.69 +0.2 5,276,900 + PFR28_04621 0.69 +0.8 5,276,900 + PFR28_04621 0.69 -2.5 5,276,900 + PFR28_04621 0.69 +0.8 5,276,901 - PFR28_04621 0.69 +0.4 5,276,901 - PFR28_04621 0.69 -3.1 5,276,901 - PFR28_04621 0.69 +0.2 5,276,901 - PFR28_04621 0.69 +1.1 5,277,101 + -2.9 5,277,102 - -0.5 5,277,102 - -1.4 5,277,103 + -1.9 5,277,103 + -0.7 5,277,104 - +0.3 5,277,180 + -1.7 5,277,180 + +1.6 5,277,180 + -1.5 5,277,180 + -0.2 5,277,181 - +1.9 5,277,181 - -2.5 5,277,181 - -1.4 5,277,181 - +1.0 5,277,181 - +1.5 5,277,181 - +1.6 5,277,181 - +1.2 5,277,182 + -0.5 5,277,182 + +4.0 5,277,182 + -0.9 5,277,182 + -0.8 5,277,183 - +1.4 5,277,183 - -1.4 5,277,278 + +0.3 5,277,279 - -0.9 5,277,279 - -0.1 5,277,279 - -0.1 5,277,313 + +0.9 5,277,314 - -1.3 5,277,314 - +0.3 5,277,314 - -0.5 5,277,314 - +2.0 5,277,314 - +0.4 5,277,358 + -1.6 5,277,358 + +2.3 5,277,358 + +1.9 5,277,359 - -3.3 5,278,312 - -1.2 5,278,325 - -0.4 5,278,465 + PFR28_04623 0.33 -0.1 5,278,465 + PFR28_04623 0.33 +0.4 5,278,465 + PFR28_04623 0.33 +0.6 5,278,465 + PFR28_04623 0.33 -0.0 5,278,466 - PFR28_04623 0.33 -0.9 5,278,501 + PFR28_04623 0.45 +1.1 5,278,501 + PFR28_04623 0.45 -2.3 5,278,647 + -2.6 5,278,647 + -1.8 5,278,647 + -0.5 5,278,647 + -2.8 5,278,647 + -1.7 5,278,648 - -2.0 5,278,648 - +1.1 5,278,648 - -2.7 5,278,648 - -2.2 5,278,652 + -0.2 5,278,652 + -1.5 5,278,652 + -2.4 5,278,652 + -1.8 5,278,652 + -0.3 5,278,652 + -0.2 5,278,652 + -0.9 5,278,652 + -2.2 5,278,652 + -1.1 5,278,653 - -0.4 5,278,653 - -1.2 5,278,653 - +1.7 5,278,653 - -2.2 5,278,653 - -1.4 5,278,653 - -1.3 5,278,662 - -2.2 5,278,662 - +0.4 5,278,698 + -0.2 5,278,698 + +1.6
Or see this region's nucleotide sequence