Strain Fitness in Pseudomonas sp. RS175 around PFR28_04620

Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
5,274,837	+		PFR28_04618	0.88	+0.2
5,274,838	-		PFR28_04618	0.88	+3.8
5,274,915	+				+1.5
5,274,915	+				-2.0
5,274,915	+				-2.6
5,274,915	+				+8.2
5,274,915	+				+0.7
5,274,915	+				+0.1
5,274,915	+				-3.7
5,274,915	+				-0.8
5,274,915	+				-1.2
5,274,915	+				-2.7
5,274,915	+				-3.1
5,274,915	+				-3.5
5,274,915	+				-3.3
5,274,915	+				+0.3
5,274,915	+				-3.8
5,274,916	-				+0.7
5,274,916	-				-2.5
5,274,916	-				+0.5
5,274,916	-				-1.9
5,274,916	-				-1.8
5,274,916	-				-1.3
5,274,916	-				-1.5
5,274,916	-				+1.1
5,274,916	-				-0.9
5,274,916	-				-0.6
5,274,916	-				+1.4
5,274,916	-				-0.5
5,274,916	-				-2.4
5,274,916	-				-0.3
5,274,916	-				-3.2
5,274,916	-				-0.8
5,274,916	-				+0.9
5,274,916	-				+1.1
5,274,962	+				+1.0
5,274,962	+				+1.5
5,274,962	+				-1.5
5,274,962	+				-0.1
5,274,962	+				-1.5
5,274,963	-				+1.4
5,274,963	-				+1.0
5,274,963	-				-0.5
5,275,027	+		PFR28_04619	0.13	-1.7
5,275,027	+		PFR28_04619	0.13	+0.7
5,275,027	+		PFR28_04619	0.13	+1.0
5,275,027	+		PFR28_04619	0.13	-0.3
5,275,028	-		PFR28_04619	0.13	-0.7
5,275,028	-		PFR28_04619	0.13	-1.9
5,275,028	-		PFR28_04619	0.13	-0.3
5,275,028	-		PFR28_04619	0.13	+3.1
5,275,028	-		PFR28_04619	0.13	-1.9
5,275,028	-		PFR28_04619	0.13	-1.1
5,275,028	-		PFR28_04619	0.13	+3.3
5,275,028	-		PFR28_04619	0.13	-3.2
5,275,185	+		PFR28_04619	0.33	-2.2
5,275,185	+		PFR28_04619	0.33	+0.8
5,275,185	+		PFR28_04619	0.33	+1.1
5,275,185	+		PFR28_04619	0.33	+0.7
5,275,186	-		PFR28_04619	0.33	+0.1
5,275,228	+		PFR28_04619	0.38	-3.0
5,275,228	+		PFR28_04619	0.38	-2.1
5,275,229	-		PFR28_04619	0.39	-2.0
5,275,229	-		PFR28_04619	0.39	-0.7
5,275,229	-		PFR28_04619	0.39	-2.2
5,275,229	-		PFR28_04619	0.39	-1.2
5,275,278	+		PFR28_04619	0.45	-2.8
5,275,493	+		PFR28_04619	0.72	+0.1
5,275,493	+		PFR28_04619	0.72	-0.1
5,275,494	-		PFR28_04619	0.72	-0.6
5,275,494	-		PFR28_04619	0.72	-1.5
5,275,494	-		PFR28_04619	0.72	+0.4
5,275,495	+		PFR28_04619	0.73	-0.1
5,275,495	+		PFR28_04619	0.73	-1.8
5,275,495	+		PFR28_04619	0.73	+1.1
5,275,495	+		PFR28_04619	0.73	+0.2
5,275,496	-		PFR28_04619	0.73	-1.7
5,275,496	-		PFR28_04619	0.73	-1.3
5,275,496	-		PFR28_04619	0.73	+1.8
5,275,496	-		PFR28_04619	0.73	+2.3
5,275,496	-		PFR28_04619	0.73	-1.5
5,275,496	-		PFR28_04619	0.73	-0.2
5,275,496	-		PFR28_04619	0.73	-1.3
5,275,496	-		PFR28_04619	0.73	+3.1
5,275,496	-		PFR28_04619	0.73	-0.2
5,275,496	-		PFR28_04619	0.73	+0.6
5,275,640	+				-1.7
5,276,025	+		PFR28_04620	0.65	-1.4
5,276,025	+		PFR28_04620	0.65	-1.0
5,276,025	+		PFR28_04620	0.65	-2.8
5,276,025	+		PFR28_04620	0.65	-1.3
5,276,026	-		PFR28_04620	0.66	-1.0
5,276,026	-		PFR28_04620	0.66	-1.3
5,276,026	-		PFR28_04620	0.66	-0.9
5,276,182	+				+1.2
5,276,183	-				+1.1
5,276,183	-				+0.2
5,276,185	+				-0.5
5,276,185	+				-0.6
5,276,185	+				-1.9
5,276,185	+				-0.2
5,276,185	+				-1.6
5,276,185	+				+2.2
5,276,185	+				-2.2
5,276,185	+				+0.1
5,276,186	-				-2.0
5,276,186	-				-0.8
5,276,186	-				+3.5
5,276,186	-				-2.2
5,276,220	+				-0.9
5,276,223	+				-3.2
5,276,224	-				+0.7
5,276,224	-				+1.1
5,276,224	-				-1.7
5,276,438	+		PFR28_04621	0.19	+2.0
5,276,439	-		PFR28_04621	0.20	+0.5
5,276,439	-		PFR28_04621	0.20	-2.0
5,276,460	+		PFR28_04621	0.22	-1.0
5,276,478	+		PFR28_04621	0.24	+1.8
5,276,478	+		PFR28_04621	0.24	-0.5
5,276,479	-		PFR28_04621	0.24	-0.4
5,276,479	-		PFR28_04621	0.24	-1.4
5,276,489	+		PFR28_04621	0.25	+0.9
5,276,490	-		PFR28_04621	0.25	+3.8
5,276,858	+		PFR28_04621	0.65	-3.0
5,276,858	+		PFR28_04621	0.65	-0.5
5,276,859	-		PFR28_04621	0.65	-2.7
5,276,859	-		PFR28_04621	0.65	-0.0
5,276,859	-		PFR28_04621	0.65	-1.0
5,276,859	-		PFR28_04621	0.65	-0.9
5,276,859	-		PFR28_04621	0.65	+1.1
5,276,859	-		PFR28_04621	0.65	-0.1
5,276,859	-		PFR28_04621	0.65	-2.2
5,276,885	+		PFR28_04621	0.68	-1.6
5,276,900	+		PFR28_04621	0.69	-0.2
5,276,900	+		PFR28_04621	0.69	-1.1
5,276,900	+		PFR28_04621	0.69	+0.2
5,276,900	+		PFR28_04621	0.69	+0.8
5,276,900	+		PFR28_04621	0.69	-2.5
5,276,900	+		PFR28_04621	0.69	+0.8
5,276,901	-		PFR28_04621	0.69	+0.4
5,276,901	-		PFR28_04621	0.69	-3.1
5,276,901	-		PFR28_04621	0.69	+0.2
5,276,901	-		PFR28_04621	0.69	+1.1
5,277,101	+				-2.9
5,277,102	-				-0.5
5,277,102	-				-1.4
5,277,103	+				-1.9
5,277,103	+				-0.7
5,277,104	-				+0.3
5,277,180	+				-1.7
5,277,180	+				+1.6
5,277,180	+				-1.5
5,277,180	+				-0.2
5,277,181	-				+1.9
5,277,181	-				-2.5
5,277,181	-				-1.4
5,277,181	-				+1.0
5,277,181	-				+1.5
5,277,181	-				+1.6
5,277,181	-				+1.2
5,277,182	+				-0.5
5,277,182	+				+4.0
5,277,182	+				-0.9
5,277,182	+				-0.8
5,277,183	-				+1.4
5,277,183	-				-1.4