Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04616 and PFR28_04617 are separated by 87 nucleotides PFR28_04617 and PFR28_04618 are separated by 37 nucleotides PFR28_04618 and PFR28_04619 overlap by 8 nucleotides PFR28_04619 and PFR28_04620 overlap by 1 nucleotides
PFR28_04616: PFR28_04616 - Catalase HPII, at 5,271,169 to 5,273,307
_04616
PFR28_04617: PFR28_04617 - hypothetical protein, at 5,273,395 to 5,274,108
_04617
PFR28_04618: PFR28_04618 - High-affinity zinc uptake system membrane protein ZnuB, at 5,274,146 to 5,274,934
_04618
PFR28_04619: PFR28_04619 - Zinc import ATP-binding protein ZnuC, at 5,274,927 to 5,275,709
_04619
PFR28_04620: PFR28_04620 - Zinc uptake regulation protein, at 5,275,709 to 5,276,191
_04620
Position (kb) 5274
5275 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 5273.305 kb on + strand at 5273.353 kb on + strand at 5273.353 kb on + strand at 5273.354 kb on - strand at 5273.354 kb on - strand at 5273.354 kb on - strand at 5273.354 kb on - strand at 5273.354 kb on - strand at 5273.397 kb on - strand at 5273.568 kb on + strand, within PFR28_04617 at 5273.569 kb on - strand, within PFR28_04617 at 5273.616 kb on + strand, within PFR28_04617 at 5273.617 kb on - strand, within PFR28_04617 at 5273.628 kb on + strand, within PFR28_04617 at 5273.628 kb on + strand, within PFR28_04617 at 5273.827 kb on + strand, within PFR28_04617 at 5273.828 kb on - strand, within PFR28_04617 at 5273.828 kb on - strand, within PFR28_04617 at 5273.828 kb on - strand, within PFR28_04617 at 5273.868 kb on - strand, within PFR28_04617 at 5273.868 kb on - strand, within PFR28_04617 at 5273.892 kb on - strand, within PFR28_04617 at 5274.012 kb on + strand, within PFR28_04617 at 5274.087 kb on - strand at 5274.087 kb on - strand at 5274.122 kb on + strand at 5274.122 kb on + strand at 5274.123 kb on - strand at 5274.148 kb on - strand at 5274.148 kb on - strand at 5274.594 kb on + strand, within PFR28_04618 at 5274.594 kb on + strand, within PFR28_04618 at 5274.595 kb on - strand, within PFR28_04618 at 5274.659 kb on - strand, within PFR28_04618 at 5274.837 kb on + strand, within PFR28_04618 at 5274.838 kb on - strand, within PFR28_04618 at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.915 kb on + strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.916 kb on - strand at 5274.962 kb on + strand at 5274.962 kb on + strand at 5274.962 kb on + strand at 5274.962 kb on + strand at 5274.962 kb on + strand at 5274.963 kb on - strand at 5274.963 kb on - strand at 5274.963 kb on - strand at 5275.027 kb on + strand, within PFR28_04619 at 5275.027 kb on + strand, within PFR28_04619 at 5275.027 kb on + strand, within PFR28_04619 at 5275.027 kb on + strand, within PFR28_04619 at 5275.028 kb on - strand, within PFR28_04619 at 5275.028 kb on - strand, within PFR28_04619 at 5275.028 kb on - strand, within PFR28_04619 at 5275.028 kb on - strand, within PFR28_04619 at 5275.028 kb on - strand, within PFR28_04619 at 5275.028 kb on - strand, within PFR28_04619 at 5275.028 kb on - strand, within PFR28_04619 at 5275.028 kb on - strand, within PFR28_04619 at 5275.185 kb on + strand, within PFR28_04619 at 5275.185 kb on + strand, within PFR28_04619 at 5275.185 kb on + strand, within PFR28_04619 at 5275.185 kb on + strand, within PFR28_04619 at 5275.186 kb on - strand, within PFR28_04619 at 5275.228 kb on + strand, within PFR28_04619 at 5275.228 kb on + strand, within PFR28_04619 at 5275.229 kb on - strand, within PFR28_04619 at 5275.229 kb on - strand, within PFR28_04619 at 5275.229 kb on - strand, within PFR28_04619 at 5275.229 kb on - strand, within PFR28_04619 at 5275.278 kb on + strand, within PFR28_04619 at 5275.493 kb on + strand, within PFR28_04619 at 5275.493 kb on + strand, within PFR28_04619 at 5275.494 kb on - strand, within PFR28_04619 at 5275.494 kb on - strand, within PFR28_04619 at 5275.494 kb on - strand, within PFR28_04619 at 5275.495 kb on + strand, within PFR28_04619 at 5275.495 kb on + strand, within PFR28_04619 at 5275.495 kb on + strand, within PFR28_04619 at 5275.495 kb on + strand, within PFR28_04619 at 5275.496 kb on - strand, within PFR28_04619 at 5275.496 kb on - strand, within PFR28_04619 at 5275.496 kb on - strand, within PFR28_04619 at 5275.496 kb on - strand, within PFR28_04619 at 5275.496 kb on - strand, within PFR28_04619 at 5275.496 kb on - strand, within PFR28_04619 at 5275.496 kb on - strand, within PFR28_04619 at 5275.496 kb on - strand, within PFR28_04619 at 5275.496 kb on - strand, within PFR28_04619 at 5275.496 kb on - strand, within PFR28_04619 at 5275.640 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct remove 5,273,305 + -0.4 5,273,353 + +1.4 5,273,353 + +2.0 5,273,354 - -1.4 5,273,354 - -0.1 5,273,354 - +2.7 5,273,354 - -0.6 5,273,354 - -0.5 5,273,397 - -1.4 5,273,568 + PFR28_04617 0.24 -1.4 5,273,569 - PFR28_04617 0.24 +3.2 5,273,616 + PFR28_04617 0.31 -0.8 5,273,617 - PFR28_04617 0.31 +1.2 5,273,628 + PFR28_04617 0.33 -0.7 5,273,628 + PFR28_04617 0.33 -0.4 5,273,827 + PFR28_04617 0.61 +1.9 5,273,828 - PFR28_04617 0.61 +0.8 5,273,828 - PFR28_04617 0.61 -0.7 5,273,828 - PFR28_04617 0.61 -0.1 5,273,868 - PFR28_04617 0.66 -1.2 5,273,868 - PFR28_04617 0.66 +2.2 5,273,892 - PFR28_04617 0.70 -2.1 5,274,012 + PFR28_04617 0.86 -0.9 5,274,087 - +1.1 5,274,087 - -0.5 5,274,122 + -1.9 5,274,122 + -0.2 5,274,123 - -3.0 5,274,148 - -0.6 5,274,148 - -1.0 5,274,594 + PFR28_04618 0.57 -1.8 5,274,594 + PFR28_04618 0.57 +0.4 5,274,595 - PFR28_04618 0.57 -1.4 5,274,659 - PFR28_04618 0.65 -2.0 5,274,837 + PFR28_04618 0.88 +0.2 5,274,838 - PFR28_04618 0.88 +3.8 5,274,915 + +1.5 5,274,915 + -2.0 5,274,915 + -2.6 5,274,915 + +8.2 5,274,915 + +0.7 5,274,915 + +0.1 5,274,915 + -3.7 5,274,915 + -0.8 5,274,915 + -1.2 5,274,915 + -2.7 5,274,915 + -3.1 5,274,915 + -3.5 5,274,915 + -3.3 5,274,915 + +0.3 5,274,915 + -3.8 5,274,916 - +0.7 5,274,916 - -2.5 5,274,916 - +0.5 5,274,916 - -1.9 5,274,916 - -1.8 5,274,916 - -1.3 5,274,916 - -1.5 5,274,916 - +1.1 5,274,916 - -0.9 5,274,916 - -0.6 5,274,916 - +1.4 5,274,916 - -0.5 5,274,916 - -2.4 5,274,916 - -0.3 5,274,916 - -3.2 5,274,916 - -0.8 5,274,916 - +0.9 5,274,916 - +1.1 5,274,962 + +1.0 5,274,962 + +1.5 5,274,962 + -1.5 5,274,962 + -0.1 5,274,962 + -1.5 5,274,963 - +1.4 5,274,963 - +1.0 5,274,963 - -0.5 5,275,027 + PFR28_04619 0.13 -1.7 5,275,027 + PFR28_04619 0.13 +0.7 5,275,027 + PFR28_04619 0.13 +1.0 5,275,027 + PFR28_04619 0.13 -0.3 5,275,028 - PFR28_04619 0.13 -0.7 5,275,028 - PFR28_04619 0.13 -1.9 5,275,028 - PFR28_04619 0.13 -0.3 5,275,028 - PFR28_04619 0.13 +3.1 5,275,028 - PFR28_04619 0.13 -1.9 5,275,028 - PFR28_04619 0.13 -1.1 5,275,028 - PFR28_04619 0.13 +3.3 5,275,028 - PFR28_04619 0.13 -3.2 5,275,185 + PFR28_04619 0.33 -2.2 5,275,185 + PFR28_04619 0.33 +0.8 5,275,185 + PFR28_04619 0.33 +1.1 5,275,185 + PFR28_04619 0.33 +0.7 5,275,186 - PFR28_04619 0.33 +0.1 5,275,228 + PFR28_04619 0.38 -3.0 5,275,228 + PFR28_04619 0.38 -2.1 5,275,229 - PFR28_04619 0.39 -2.0 5,275,229 - PFR28_04619 0.39 -0.7 5,275,229 - PFR28_04619 0.39 -2.2 5,275,229 - PFR28_04619 0.39 -1.2 5,275,278 + PFR28_04619 0.45 -2.8 5,275,493 + PFR28_04619 0.72 +0.1 5,275,493 + PFR28_04619 0.72 -0.1 5,275,494 - PFR28_04619 0.72 -0.6 5,275,494 - PFR28_04619 0.72 -1.5 5,275,494 - PFR28_04619 0.72 +0.4 5,275,495 + PFR28_04619 0.73 -0.1 5,275,495 + PFR28_04619 0.73 -1.8 5,275,495 + PFR28_04619 0.73 +1.1 5,275,495 + PFR28_04619 0.73 +0.2 5,275,496 - PFR28_04619 0.73 -1.7 5,275,496 - PFR28_04619 0.73 -1.3 5,275,496 - PFR28_04619 0.73 +1.8 5,275,496 - PFR28_04619 0.73 +2.3 5,275,496 - PFR28_04619 0.73 -1.5 5,275,496 - PFR28_04619 0.73 -0.2 5,275,496 - PFR28_04619 0.73 -1.3 5,275,496 - PFR28_04619 0.73 +3.1 5,275,496 - PFR28_04619 0.73 -0.2 5,275,496 - PFR28_04619 0.73 +0.6 5,275,640 + -1.7
Or see this region's nucleotide sequence