Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_03868 and PFR28_03869 are separated by 10 nucleotides PFR28_03869 and PFR28_03870 are separated by 9 nucleotides PFR28_03870 and PFR28_03871 are separated by 57 nucleotides PFR28_03871 and PFR28_03872 are separated by 1 nucleotides
PFR28_03868: PFR28_03868 - Peptidoglycan D,D-transpeptidase MrdA, at 4,444,842 to 4,446,737
_03868
PFR28_03869: PFR28_03869 - Ribosomal RNA large subunit methyltransferase H, at 4,446,748 to 4,447,215
_03869
PFR28_03870: PFR28_03870 - Ribosomal silencing factor RsfS, at 4,447,225 to 4,447,650
_03870
PFR28_03871: PFR28_03871 - putative nicotinate-nucleotide adenylyltransferase, at 4,447,708 to 4,448,394
_03871
PFR28_03872: PFR28_03872 - Gamma-glutamyl phosphate reductase, at 4,448,396 to 4,449,667
_03872
Position (kb) 4447
4448 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4446.750 kb on - strand at 4446.750 kb on - strand at 4446.750 kb on - strand at 4446.750 kb on - strand at 4446.750 kb on - strand at 4446.750 kb on - strand at 4446.759 kb on - strand at 4446.759 kb on - strand at 4446.792 kb on - strand at 4446.792 kb on - strand at 4447.148 kb on + strand, within PFR28_03869 at 4447.148 kb on + strand, within PFR28_03869 at 4447.148 kb on + strand, within PFR28_03869 at 4447.149 kb on - strand, within PFR28_03869 at 4447.149 kb on - strand, within PFR28_03869 at 4447.149 kb on - strand, within PFR28_03869 at 4447.149 kb on - strand, within PFR28_03869 at 4447.149 kb on - strand, within PFR28_03869 at 4447.227 kb on - strand at 4447.651 kb on - strand at 4447.653 kb on - strand at 4447.653 kb on - strand at 4447.653 kb on - strand at 4447.653 kb on - strand at 4447.671 kb on - strand at 4447.671 kb on - strand at 4447.671 kb on - strand at 4447.671 kb on - strand at 4447.671 kb on - strand at 4447.671 kb on - strand at 4447.671 kb on - strand at 4447.671 kb on - strand at 4447.671 kb on - strand at 4447.671 kb on - strand at 4447.671 kb on - strand at 4447.671 kb on - strand at 4448.443 kb on - strand at 4448.443 kb on - strand at 4448.443 kb on - strand at 4448.561 kb on - strand, within PFR28_03872
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct remove 4,446,750 - +0.3 4,446,750 - +1.9 4,446,750 - +0.0 4,446,750 - -0.1 4,446,750 - -1.5 4,446,750 - -0.2 4,446,759 - -0.5 4,446,759 - +0.5 4,446,792 - +0.1 4,446,792 - -1.0 4,447,148 + PFR28_03869 0.85 +1.6 4,447,148 + PFR28_03869 0.85 +1.0 4,447,148 + PFR28_03869 0.85 +1.6 4,447,149 - PFR28_03869 0.86 +0.9 4,447,149 - PFR28_03869 0.86 +0.4 4,447,149 - PFR28_03869 0.86 -1.1 4,447,149 - PFR28_03869 0.86 +1.9 4,447,149 - PFR28_03869 0.86 -1.6 4,447,227 - +2.5 4,447,651 - -0.9 4,447,653 - +0.0 4,447,653 - -0.4 4,447,653 - +0.3 4,447,653 - +2.6 4,447,671 - -0.7 4,447,671 - -0.9 4,447,671 - +1.0 4,447,671 - +0.4 4,447,671 - -1.3 4,447,671 - -2.1 4,447,671 - -1.6 4,447,671 - -2.4 4,447,671 - -1.1 4,447,671 - +0.9 4,447,671 - -1.9 4,447,671 - -3.9 4,448,443 - +0.6 4,448,443 - +0.6 4,448,443 - +1.6 4,448,561 - PFR28_03872 0.13 +2.6
Or see this region's nucleotide sequence