Strain Fitness in Pseudomonas sp. RS175 around PFR28_03801

Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
4,372,546	+				-2.3
4,372,546	+				-0.0
4,372,546	+				+0.9
4,372,546	+				-0.4
4,372,546	+				+0.2
4,372,546	+				-1.3
4,372,546	+				+4.3
4,372,546	+				+0.5
4,372,547	-				-0.2
4,372,547	-				+0.3
4,372,547	-				-1.2
4,372,547	-				-1.8
4,372,549	+				-2.6
4,372,549	+				-0.4
4,372,549	+				+1.3
4,372,549	+				+0.1
4,372,549	+				-0.9
4,372,549	+				-2.9
4,372,550	-				+1.2
4,372,550	-				+0.4
4,372,550	-				+0.6
4,372,550	-				-1.8
4,372,550	-				-1.7
4,372,564	+				-1.7
4,372,564	+				-0.2
4,372,564	+				+0.3
4,372,564	+				-0.5
4,372,564	+				-1.5
4,372,564	+				+2.3
4,372,565	-				-0.5
4,372,565	-				-0.3
4,372,565	-				+0.7
4,372,565	-				-3.0
4,372,741	+		PFR28_03800	0.24	-0.9
4,372,741	+		PFR28_03800	0.24	+1.0
4,372,741	+		PFR28_03800	0.24	-0.7
4,372,741	+		PFR28_03800	0.24	+1.5
4,372,741	+		PFR28_03800	0.24	+0.7
4,372,742	-		PFR28_03800	0.24	+0.8
4,372,742	-		PFR28_03800	0.24	-1.5
4,372,742	-		PFR28_03800	0.24	+0.0
4,372,742	-		PFR28_03800	0.24	-1.3
4,372,742	-		PFR28_03800	0.24	+1.2
4,372,742	-		PFR28_03800	0.24	+0.0
4,372,777	+		PFR28_03800	0.27	-0.2
4,372,777	+		PFR28_03800	0.27	-0.2
4,372,777	+		PFR28_03800	0.27	+1.2
4,372,777	+		PFR28_03800	0.27	-0.8
4,372,777	+		PFR28_03800	0.27	+1.2
4,372,777	+		PFR28_03800	0.27	+0.3
4,372,778	-		PFR28_03800	0.27	+0.3
4,372,778	-		PFR28_03800	0.27	+0.0
4,372,778	-		PFR28_03800	0.27	+0.5
4,372,778	-		PFR28_03800	0.27	-0.4
4,372,778	-		PFR28_03800	0.27	-0.1
4,372,778	-		PFR28_03800	0.27	-0.2
4,372,778	-		PFR28_03800	0.27	+0.7
4,372,999	+		PFR28_03800	0.49	+1.7
4,372,999	+		PFR28_03800	0.49	-2.3
4,372,999	+		PFR28_03800	0.49	-1.3
4,372,999	+		PFR28_03800	0.49	-2.6
4,372,999	+		PFR28_03800	0.49	+2.9
4,373,000	-		PFR28_03800	0.49	-2.0
4,373,000	-		PFR28_03800	0.49	-3.2
4,373,000	-		PFR28_03800	0.49	+0.1
4,373,000	-		PFR28_03800	0.49	-1.3
4,373,068	+		PFR28_03800	0.56	-0.3
4,373,068	+		PFR28_03800	0.56	-1.7
4,373,068	+		PFR28_03800	0.56	+1.6
4,373,068	+		PFR28_03800	0.56	+2.4
4,373,260	+		PFR28_03800	0.75	-1.8
4,373,260	+		PFR28_03800	0.75	+1.9
4,373,260	+		PFR28_03800	0.75	-2.9
4,373,260	+		PFR28_03800	0.75	+1.2
4,373,261	-		PFR28_03800	0.75	-0.6
4,373,261	-		PFR28_03800	0.75	-1.8
4,373,261	-		PFR28_03800	0.75	+0.7
4,373,261	-		PFR28_03800	0.75	+0.4
4,373,284	+		PFR28_03800	0.77	+0.6
4,373,418	-				-0.7
4,373,452	+				-2.3
4,373,452	+				+4.4
4,373,452	+				+0.1
4,373,452	+				-2.4
4,373,452	+				+0.1
4,373,452	+				+1.8
4,373,452	+				+1.5
4,373,452	+				-1.4
4,373,453	-				+0.0
4,373,453	-				-0.6
4,373,453	-				+0.8
4,373,453	-				-2.2
4,373,453	-				-1.9
4,373,453	-				+1.8
4,373,453	-				+1.3
4,373,453	-				-0.9
4,373,453	-				-0.3
4,373,453	-				-1.0
4,373,453	-				-1.0
4,373,453	-				+0.1
4,373,453	-				+1.0
4,373,453	-				-1.0
4,373,453	-				-1.5
4,373,453	-				-1.1
4,373,453	-				+1.8
4,373,505	-				-0.8
4,373,655	+				-2.1
4,373,671	+		PFR28_03801	0.11	-2.6
4,373,671	+		PFR28_03801	0.11	-1.9
4,373,671	+		PFR28_03801	0.11	-0.6
4,373,672	-		PFR28_03801	0.11	+3.5
4,373,672	-		PFR28_03801	0.11	-0.4
4,373,672	-		PFR28_03801	0.11	+0.6
4,373,672	-		PFR28_03801	0.11	+1.3
4,373,672	-		PFR28_03801	0.11	+0.1
4,373,672	-		PFR28_03801	0.11	+0.6
4,373,672	-		PFR28_03801	0.11	+1.1
4,373,701	+		PFR28_03801	0.13	+0.9
4,373,701	+		PFR28_03801	0.13	+1.0
4,373,701	+		PFR28_03801	0.13	-0.1
4,373,701	+		PFR28_03801	0.13	-0.5
4,373,702	-		PFR28_03801	0.13	-0.7
4,373,702	-		PFR28_03801	0.13	-3.7
4,373,702	-		PFR28_03801	0.13	-1.1
4,373,785	+		PFR28_03801	0.19	-0.3
4,373,786	-		PFR28_03801	0.19	-0.6
4,373,896	+		PFR28_03801	0.27	-0.2
4,373,896	+		PFR28_03801	0.27	-3.0
4,374,409	+		PFR28_03801	0.62	-1.0
4,374,655	+		PFR28_03801	0.79	+1.7
4,374,655	+		PFR28_03801	0.79	-0.7
4,374,655	+		PFR28_03801	0.79	+0.3
4,374,655	+		PFR28_03801	0.79	-2.1
4,374,655	+		PFR28_03801	0.79	-3.0
4,374,655	+		PFR28_03801	0.79	+2.6
4,374,656	-		PFR28_03801	0.79	+1.2
4,374,656	-		PFR28_03801	0.79	-1.2
4,374,656	-		PFR28_03801	0.79	-0.1
4,374,656	-		PFR28_03801	0.79	-0.3
4,374,724	+		PFR28_03801	0.84	-1.1
4,374,725	-		PFR28_03801	0.84	-1.5
4,374,793	+		PFR28_03801	0.89	-0.9
4,374,793	+		PFR28_03801	0.89	+1.1
4,374,794	-		PFR28_03801	0.89	-0.5
4,374,794	-		PFR28_03801	0.89	+2.5
4,374,794	-		PFR28_03801	0.89	-2.0
4,374,794	-		PFR28_03801	0.89	+1.0
4,374,794	-		PFR28_03801	0.89	-0.2
4,374,794	-		PFR28_03801	0.89	-0.7
4,374,794	-		PFR28_03801	0.89	-0.1
4,374,805	+		PFR28_03801	0.90	-1.2
4,374,805	+		PFR28_03801	0.90	-0.6
4,374,806	-		PFR28_03801	0.90	+0.2
4,374,806	-		PFR28_03801	0.90	-2.4
4,374,806	-		PFR28_03801	0.90	-1.1
4,374,806	-		PFR28_03801	0.90	-0.5
4,374,806	-		PFR28_03801	0.90	-0.3
4,374,806	-		PFR28_03801	0.90	+0.1
4,374,806	-		PFR28_03801	0.90	+2.0
4,374,806	-		PFR28_03801	0.90	+1.0
4,374,806	-		PFR28_03801	0.90	-2.3
4,374,806	-		PFR28_03801	0.90	-0.4
4,374,806	-		PFR28_03801	0.90	+0.0
4,374,806	-		PFR28_03801	0.90	-1.1
4,374,853	+				-0.5
4,374,854	-				-1.3
4,374,854	-				+0.0
4,374,953	+				+1.0
4,374,953	+				+0.9
4,374,953	+				-1.8
4,374,953	+				+0.3
4,374,953	+				-0.3
4,374,953	+				+1.0
4,374,953	+				-1.4
4,374,953	+				-1.2
4,374,953	+				+0.1
4,374,953	+				+1.0
4,374,953	+				+0.3
4,374,953	+				+0.5
4,374,953	+				+1.2
4,374,953	+				+1.6
4,374,954	-				+2.1
4,374,954	-				-2.3
4,374,954	-				-1.2
4,374,954	-				+0.9
4,374,954	-				+0.7
4,374,954	-				-0.0
4,374,954	-				+0.6
4,374,954	-				+2.6
4,374,954	-				-1.0
4,374,954	-				-0.0
4,374,954	-				+2.9
4,374,954	-				+0.9
4,374,954	-				+0.6
4,374,954	-				-0.4
4,374,973	-				+0.0
4,375,067	+				-0.7
4,375,068	-				-0.1
4,375,068	-				+3.2
4,375,068	-				-3.4
4,375,068	-				+0.4
4,375,138	+				+1.8
4,375,301	+				-0.4
4,375,301	+				-2.1
4,375,301	+				-2.3
4,375,301	+				-1.9
4,375,302	-				+0.6
4,375,302	-				-0.6
4,375,319	+				-2.0
4,375,320	-				+0.6
4,375,337	+				+1.2
4,375,338	-				-2.0
4,375,338	-				+0.3
4,375,389	+				-0.0
4,375,393	+				+1.5
4,375,393	+				+0.5
4,375,435	+				-1.9
4,375,436	-				-1.1
4,375,467	+				+1.3
4,375,467	+				+0.9
4,375,467	+				-0.0
4,375,467	+				-2.7
4,375,467	+				-0.2
4,375,467	+				+2.1
4,375,467	+				-1.7
4,375,467	+				+2.6
4,375,467	+				+2.1
4,375,468	-				-0.2
4,375,468	-				-1.2
4,375,468	-				+0.1
4,375,468	-				+2.0
4,375,468	-				+1.3
4,375,468	-				+0.9
4,375,468	-				-1.2
4,375,468	-				+0.6
4,375,591	-				-1.7
4,375,692	+		PFR28_03802	0.18	+0.5
4,375,693	-		PFR28_03802	0.18	+1.0