Strain Fitness in Pseudomonas sp. RS175 around PFR28_02983

Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
3,486,594	+		PFR28_02982	0.10	-2.2
3,486,594	+		PFR28_02982	0.10	-0.8
3,486,594	+		PFR28_02982	0.10	+0.3
3,486,594	+		PFR28_02982	0.10	-1.4
3,486,595	-		PFR28_02982	0.10	+0.2
3,486,720	+		PFR28_02982	0.22	+0.8
3,486,720	+		PFR28_02982	0.22	+1.0
3,486,720	+		PFR28_02982	0.22	-2.5
3,486,721	-		PFR28_02982	0.22	-2.9
3,486,721	-		PFR28_02982	0.22	+2.1
3,486,721	-		PFR28_02982	0.22	-3.0
3,486,721	-		PFR28_02982	0.22	+1.6
3,486,722	+		PFR28_02982	0.22	+0.7
3,486,722	+		PFR28_02982	0.22	-0.1
3,486,722	+		PFR28_02982	0.22	+0.8
3,486,722	+		PFR28_02982	0.22	-1.5
3,486,723	-		PFR28_02982	0.23	+0.0
3,486,723	-		PFR28_02982	0.23	-3.4
3,486,804	+		PFR28_02982	0.30	+0.6
3,486,804	+		PFR28_02982	0.30	-0.9
3,486,804	+		PFR28_02982	0.30	-0.3
3,486,804	+		PFR28_02982	0.30	-0.2
3,486,805	-		PFR28_02982	0.30	-0.8
3,486,805	-		PFR28_02982	0.30	+2.7
3,486,811	-		PFR28_02982	0.31	+0.3
3,486,811	-		PFR28_02982	0.31	+1.0
3,486,831	+		PFR28_02982	0.33	-1.0
3,486,831	+		PFR28_02982	0.33	-0.1
3,486,831	+		PFR28_02982	0.33	+1.3
3,486,831	+		PFR28_02982	0.33	-1.2
3,486,832	-		PFR28_02982	0.33	+0.0
3,486,832	-		PFR28_02982	0.33	-1.0
3,486,832	-		PFR28_02982	0.33	-0.6
3,486,978	+		PFR28_02982	0.47	+0.0
3,486,978	+		PFR28_02982	0.47	-1.2
3,486,978	+		PFR28_02982	0.47	-0.8
3,486,979	-		PFR28_02982	0.47	+0.2
3,486,979	-		PFR28_02982	0.47	+1.0
3,487,160	-		PFR28_02982	0.64	-3.5
3,487,160	-		PFR28_02982	0.64	+0.3
3,487,213	+		PFR28_02982	0.69	-1.4
3,487,288	+		PFR28_02982	0.76	+0.8
3,487,471	-				+0.3
3,487,471	-				-0.7
3,487,471	-				+0.8
3,487,633	+		PFR28_02983	0.11	-1.4
3,487,633	+		PFR28_02983	0.11	-0.6
3,487,633	+		PFR28_02983	0.11	-0.0
3,487,633	+		PFR28_02983	0.11	-0.8
3,487,634	-		PFR28_02983	0.11	+0.1
3,487,634	-		PFR28_02983	0.11	-1.5
3,487,634	-		PFR28_02983	0.11	+0.3
3,487,634	-		PFR28_02983	0.11	+1.1
3,487,670	+		PFR28_02983	0.16	-0.3
3,487,671	-		PFR28_02983	0.16	-1.9
3,487,671	-		PFR28_02983	0.16	-1.8
3,487,759	+		PFR28_02983	0.27	+0.8
3,487,760	-		PFR28_02983	0.27	-1.2
3,487,760	-		PFR28_02983	0.27	+1.3
3,487,760	-		PFR28_02983	0.27	+1.0
3,487,852	+		PFR28_02983	0.38	-1.2
3,487,853	-		PFR28_02983	0.38	-0.2
3,487,984	+		PFR28_02983	0.55	-1.8
3,487,984	+		PFR28_02983	0.55	+0.5
3,487,984	+		PFR28_02983	0.55	-0.4
3,487,984	+		PFR28_02983	0.55	-0.8
3,487,984	+		PFR28_02983	0.55	-2.0
3,487,985	-		PFR28_02983	0.55	+0.3
3,487,985	-		PFR28_02983	0.55	+1.7
3,488,056	+		PFR28_02983	0.64	+0.2
3,488,134	+		PFR28_02983	0.73	-0.4
3,488,134	+		PFR28_02983	0.73	-0.1
3,488,135	-		PFR28_02983	0.73	-1.7
3,488,161	+		PFR28_02983	0.77	+0.0
3,488,161	+		PFR28_02983	0.77	-1.0
3,488,179	+		PFR28_02983	0.79	-0.9
3,488,180	-		PFR28_02983	0.79	+0.5
3,488,306	+				+1.0
3,488,409	+				-1.4
3,488,410	-				-2.4
3,488,448	+				+0.6
3,488,448	+				-0.4
3,488,448	+				-0.7
3,488,448	+				+1.1
3,488,448	+				+1.1
3,488,449	-				-0.3
3,488,449	-				-0.2
3,488,449	-				+1.2
3,488,449	-				+0.3
3,488,449	-				+0.4
3,488,482	+				-1.2
3,488,482	+				+0.0
3,488,482	+				-0.6
3,488,482	+				-0.5
3,488,482	+				+1.0
3,488,482	+				-3.5
3,488,483	-				-0.8
3,488,483	-				-0.4
3,488,483	-				-3.4
3,488,483	-				+1.1
3,488,483	-				-0.8
3,488,483	-				-0.6
3,488,483	-				+0.2
3,488,483	-				+0.0
3,488,484	+				+0.6
3,488,484	+				-0.7
3,488,484	+				+0.6
3,488,484	+				+2.4
3,488,484	+				+0.3
3,488,484	+				-0.3
3,488,484	+				-1.2
3,488,484	+				-0.6
3,488,484	+				-1.7
3,488,484	+				-2.4
3,488,484	+				-1.6
3,488,484	+				-0.4
3,488,484	+				-0.2
3,488,484	+				+0.8
3,488,484	+				-0.3
3,488,484	+				-1.9
3,488,484	+				-0.2
3,488,484	+				-1.9
3,488,484	+				-0.8
3,488,484	+				+1.2
3,488,484	+				-0.7
3,488,485	-				+1.3
3,488,485	-				-0.3
3,488,485	-				-0.4
3,488,485	-				+0.7
3,488,485	-				-1.8
3,488,485	-				-1.0
3,488,485	-				+1.7
3,488,485	-				-0.4
3,488,485	-				-2.1
3,488,485	-				+0.6
3,488,485	-				+0.8
3,488,485	-				+0.9
3,488,485	-				+2.2
3,488,485	-				+0.3
3,488,485	-				+0.9
3,488,485	-				+0.8
3,488,485	-				+0.1
3,488,485	-				-1.6
3,488,485	-				+3.9
3,488,485	-				-0.8
3,488,774	+		PFR28_02984	0.28	+0.4
3,488,775	-		PFR28_02984	0.28	+0.1
3,488,864	+		PFR28_02984	0.35	-0.5
3,488,865	-		PFR28_02984	0.35	-2.7
3,488,896	-		PFR28_02984	0.37	-0.3
3,488,896	-		PFR28_02984	0.37	-0.2
3,488,907	+		PFR28_02984	0.38	-1.1
3,488,907	+		PFR28_02984	0.38	+1.7
3,488,907	+		PFR28_02984	0.38	+0.6
3,488,907	+		PFR28_02984	0.38	+0.8
3,488,908	-		PFR28_02984	0.38	+0.7
3,488,908	-		PFR28_02984	0.38	-1.2
3,488,908	-		PFR28_02984	0.38	-1.4
3,488,908	-		PFR28_02984	0.38	-1.1
3,488,908	-		PFR28_02984	0.38	+0.8
3,488,908	-		PFR28_02984	0.38	+1.2
3,488,967	+		PFR28_02984	0.43	-1.7
3,488,967	+		PFR28_02984	0.43	-0.4
3,488,967	+		PFR28_02984	0.43	-1.7
3,488,968	-		PFR28_02984	0.43	-2.5
3,488,968	-		PFR28_02984	0.43	-2.8
3,489,133	-		PFR28_02984	0.55	+0.3
3,489,268	+		PFR28_02984	0.66	+0.3
3,489,268	+		PFR28_02984	0.66	+1.3
3,489,269	-		PFR28_02984	0.66	-0.7
3,489,270	+		PFR28_02984	0.66	+0.0
3,489,270	+		PFR28_02984	0.66	+0.1
3,489,270	+		PFR28_02984	0.66	+0.0
3,489,270	+		PFR28_02984	0.66	+0.4
3,489,271	-		PFR28_02984	0.66	+1.0
3,489,271	-		PFR28_02984	0.66	-3.3
3,489,271	-		PFR28_02984	0.66	-0.5
3,489,271	-		PFR28_02984	0.66	-0.7
3,489,313	+		PFR28_02984	0.69	-0.0
3,489,314	-		PFR28_02984	0.69	-0.2
3,489,314	-		PFR28_02984	0.69	+0.3
3,489,314	-		PFR28_02984	0.69	+0.6