Strain Fitness in Pseudomonas sp. RS175 around PFR28_01717

Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
1,908,304	+		PFR28_01716	0.27	+1.2
1,908,304	+		PFR28_01716	0.27	+0.4
1,908,304	+		PFR28_01716	0.27	+0.0
1,908,304	+		PFR28_01716	0.27	-0.1
1,908,304	+		PFR28_01716	0.27	-2.9
1,908,305	-		PFR28_01716	0.27	+2.0
1,908,305	-		PFR28_01716	0.27	+0.3
1,908,305	-		PFR28_01716	0.27	-0.9
1,908,362	-		PFR28_01716	0.33	+0.2
1,908,376	+		PFR28_01716	0.35	+0.2
1,908,377	-		PFR28_01716	0.35	-1.1
1,908,377	-		PFR28_01716	0.35	+0.4
1,908,377	-		PFR28_01716	0.35	+1.3
1,908,377	-		PFR28_01716	0.35	+1.8
1,908,377	-		PFR28_01716	0.35	-1.7
1,908,455	-		PFR28_01716	0.44	+0.1
1,908,455	-		PFR28_01716	0.44	-0.3
1,908,497	-		PFR28_01716	0.48	+2.0
1,908,636	+		PFR28_01716	0.64	+0.3
1,908,637	-		PFR28_01716	0.64	-0.2
1,908,637	-		PFR28_01716	0.64	-3.5
1,908,772	+		PFR28_01716	0.79	-0.6
1,908,787	+		PFR28_01716	0.80	-1.6
1,908,787	+		PFR28_01716	0.80	-0.9
1,908,787	+		PFR28_01716	0.80	-0.5
1,908,787	+		PFR28_01716	0.80	+0.2
1,908,788	-		PFR28_01716	0.80	+2.9
1,908,788	-		PFR28_01716	0.80	+1.1
1,908,788	-		PFR28_01716	0.80	-0.9
1,908,788	-		PFR28_01716	0.80	-1.0
1,908,788	-		PFR28_01716	0.80	-2.6
1,908,838	+		PFR28_01716	0.86	-1.9
1,908,838	+		PFR28_01716	0.86	+3.0
1,908,838	+		PFR28_01716	0.86	-0.1
1,908,893	-				+1.9
1,908,893	-				-2.1
1,908,893	-				-0.7
1,908,931	+				-1.0
1,908,931	+				+2.2
1,908,932	-				-1.5
1,908,932	-				+0.5
1,908,932	-				+1.0
1,908,932	-				-0.7
1,908,932	-				-0.1
1,908,965	+				+1.3
1,908,965	+				+0.4
1,908,965	+				+0.6
1,908,965	+				+0.0
1,908,966	-				-2.1
1,908,966	-				+0.8
1,908,966	-				-0.3
1,908,966	-				+0.0
1,908,966	-				-0.9
1,908,986	-				+1.7
1,909,060	+				-0.9
1,909,060	+				-0.0
1,909,060	+				-1.0
1,909,060	+				-1.2
1,909,060	+				-2.2
1,909,060	+				-2.0
1,909,060	+				+1.0
1,909,060	+				-3.2
1,909,060	+				-0.2
1,909,060	+				-0.6
1,909,060	+				+1.6
1,909,060	+				+1.4
1,909,060	+				+0.1
1,909,060	+				-1.1
1,909,060	+				+0.4
1,909,061	-				+0.0
1,909,061	-				+2.1
1,909,061	-				+2.2
1,909,061	-				+0.2
1,909,061	-				+0.5
1,909,061	-				+1.4
1,909,061	-				-3.0
1,909,061	-				-2.6
1,909,061	-				+0.5
1,909,061	-				-0.8
1,909,090	+				-0.0
1,909,090	+				-0.7
1,909,091	-				+1.3
1,909,091	-				+3.8
1,909,091	-				-0.9
1,909,091	-				+1.5
1,909,188	+				-1.0
1,909,188	+				-0.1
1,909,188	+				+0.1
1,909,188	+				-1.8
1,909,188	+				-3.5
1,909,188	+				-2.1
1,909,188	+				-1.3
1,909,188	+				-0.9
1,909,188	+				+0.3
1,909,188	+				-0.1
1,909,188	+				-0.2
1,909,189	-				+1.9
1,909,189	-				-0.8
1,909,189	-				+1.1
1,909,189	-				+2.1
1,909,189	-				+2.0
1,909,189	-				+0.5
1,909,189	-				-0.2
1,909,189	-				-0.9
1,909,189	-				-1.7
1,909,189	-				-0.2
1,909,189	-				+1.4
1,909,189	-				+2.3
1,909,201	+				+0.2
1,909,201	+				+1.1
1,909,201	+				-3.7
1,909,201	+				-1.5
1,909,378	+		PFR28_01717	0.18	+1.1
1,909,379	-		PFR28_01717	0.18	+0.8
1,909,379	-		PFR28_01717	0.18	-0.5
1,909,380	+		PFR28_01717	0.18	-0.3
1,909,380	+		PFR28_01717	0.18	-3.2
1,909,380	+		PFR28_01717	0.18	+3.7
1,909,380	+		PFR28_01717	0.18	+1.2
1,909,380	+		PFR28_01717	0.18	+1.0
1,909,380	+		PFR28_01717	0.18	-0.1
1,909,380	+		PFR28_01717	0.18	+0.5
1,909,380	+		PFR28_01717	0.18	-1.5
1,909,381	-		PFR28_01717	0.18	+0.2
1,909,381	-		PFR28_01717	0.18	-2.1
1,909,381	-		PFR28_01717	0.18	-1.2
1,909,381	-		PFR28_01717	0.18	-0.3
1,909,520	-		PFR28_01717	0.29	+1.1
1,909,659	+		PFR28_01717	0.40	-1.3
1,909,659	+		PFR28_01717	0.40	+2.0
1,909,660	-		PFR28_01717	0.40	+1.3
1,909,668	+		PFR28_01717	0.40	-0.7
1,909,668	+		PFR28_01717	0.40	-0.7
1,909,669	-		PFR28_01717	0.40	+2.3
1,909,669	-		PFR28_01717	0.40	-3.1
1,909,800	+		PFR28_01717	0.50	-0.3
1,910,314	+				-0.1
1,910,314	+				-1.7
1,910,314	+				-3.8
1,910,401	-				+0.9
1,910,613	+		PFR28_01718	0.26	-4.4
1,910,614	-		PFR28_01718	0.26	-1.7
1,910,787	+		PFR28_01718	0.73	-1.6
1,910,787	+		PFR28_01718	0.73	-3.0
1,910,894	+				-2.3
1,910,894	+				+0.5
1,910,894	+				-2.1
1,910,894	+				-1.1
1,910,895	-				-1.3
1,910,908	-				+0.8
1,910,908	-				+1.4
1,910,932	+				-1.1
1,910,932	+				-1.1
1,910,932	+				+0.5
1,910,932	+				+0.3
1,910,933	-				+2.2
1,910,933	-				-2.3
1,910,942	+				+1.6
1,910,943	-				+0.5
1,910,943	-				-0.4
1,910,943	-				+0.7
1,910,943	-				+0.7
1,910,975	+				+2.0
1,910,975	+				-2.6
1,910,976	-				-0.9
1,910,976	-				+0.5
1,910,976	-				-2.6
1,910,976	-				+1.5
1,910,976	-				-0.5
1,910,989	+				-3.7
1,910,989	+				-1.6
1,910,989	+				-0.7
1,910,989	+				+4.5
1,910,989	+				-0.1
1,910,989	+				-0.7
1,910,989	+				+0.4
1,910,989	+				-0.3
1,910,989	+				-1.2
1,910,989	+				-1.7
1,910,989	+				+0.5
1,910,989	+				+0.5
1,910,989	+				-1.1
1,910,989	+				+5.1
1,910,989	+				-1.2
1,910,989	+				+1.1
1,910,989	+				+2.6
1,910,989	+				+0.3
1,910,989	+				+1.1
1,910,989	+				+2.2
1,910,990	-				+0.2
1,910,990	-				-1.7
1,910,990	-				-3.4
1,910,990	-				+0.4
1,910,990	-				-2.5
1,910,990	-				-2.5
1,910,990	-				+0.2
1,910,990	-				+0.1
1,910,990	-				+0.0
1,910,990	-				-2.1
1,910,990	-				-1.1
1,910,990	-				-2.8
1,910,990	-				-2.6
1,910,990	-				+1.2
1,910,990	-				-0.5
1,910,990	-				-1.6
1,910,990	-				+0.2
1,910,990	-				-1.3
1,910,990	-				+0.3
1,910,991	+				+2.4
1,910,991	+				+0.6
1,910,991	+				-3.1
1,910,991	+				-0.9
1,910,991	+				-2.3
1,910,992	-				+1.0
1,910,992	-				-1.4
1,910,992	-				-2.1
1,910,992	-				+1.4
1,910,992	-				-0.5
1,910,994	+				-2.6
1,910,994	+				-1.2
1,910,994	+				+1.8
1,910,994	+				-2.9
1,910,994	+				-3.5
1,910,995	-				+0.5
1,910,995	-				-3.6
1,910,995	-				-2.1
1,910,995	-				+0.1
1,911,196	+				-1.7
1,911,257	+				-1.9
1,911,258	-				-1.6
1,911,258	-				-2.4
1,911,258	-				-3.8
1,911,258	-				-3.4
1,911,307	+				-2.0
1,911,308	-				-2.9
1,911,308	-				-2.6
1,911,308	-				-2.0
1,911,398	+				-3.0
1,911,398	+				-3.8
1,911,399	-				-1.3