Strain Fitness in Pseudomonas sp. RS175 around PFR28_01412

Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
1,538,373	+		PFR28_01411	0.48	-0.5
1,538,373	+		PFR28_01411	0.48	-1.3
1,538,376	+		PFR28_01411	0.48	-1.3
1,538,376	+		PFR28_01411	0.48	+0.3
1,538,376	+		PFR28_01411	0.48	-2.2
1,538,376	+		PFR28_01411	0.48	-1.3
1,538,376	+		PFR28_01411	0.48	+0.6
1,538,376	+		PFR28_01411	0.48	+0.5
1,538,376	+		PFR28_01411	0.48	-2.7
1,538,376	+		PFR28_01411	0.48	-2.0
1,538,376	+		PFR28_01411	0.48	-1.0
1,538,377	-		PFR28_01411	0.48	-1.2
1,538,377	-		PFR28_01411	0.48	-0.6
1,538,377	-		PFR28_01411	0.48	-0.8
1,538,377	-		PFR28_01411	0.48	+0.2
1,538,377	-		PFR28_01411	0.48	-0.1
1,538,377	-		PFR28_01411	0.48	-2.6
1,538,465	+		PFR28_01411	0.53	-1.2
1,538,465	+		PFR28_01411	0.53	-0.5
1,538,466	-		PFR28_01411	0.53	-0.6
1,538,658	+		PFR28_01411	0.64	+0.4
1,538,658	+		PFR28_01411	0.64	-2.4
1,538,658	+		PFR28_01411	0.64	-0.9
1,538,658	+		PFR28_01411	0.64	+0.0
1,538,658	+		PFR28_01411	0.64	-3.6
1,538,659	-		PFR28_01411	0.64	-0.8
1,538,659	-		PFR28_01411	0.64	-0.9
1,538,659	-		PFR28_01411	0.64	-0.5
1,538,659	-		PFR28_01411	0.64	-1.4
1,538,659	-		PFR28_01411	0.64	-2.0
1,538,659	-		PFR28_01411	0.64	+0.3
1,538,748	+		PFR28_01411	0.69	+1.4
1,538,749	-		PFR28_01411	0.69	+2.0
1,538,781	+		PFR28_01411	0.71	+0.3
1,538,986	-		PFR28_01411	0.82	-1.7
1,538,986	-		PFR28_01411	0.82	-2.9
1,538,986	-		PFR28_01411	0.82	-2.1
1,539,119	+				-0.8
1,539,120	-				-1.4
1,539,120	-				-1.5
1,539,120	-				+0.4
1,539,227	-				+0.2
1,539,249	-				+0.2
1,539,270	+				+2.5
1,539,271	-				-1.8
1,539,291	+				+0.5
1,539,292	-				-2.5
1,539,927	+				-1.5
1,539,927	+				-2.7
1,539,927	+				+0.1
1,539,927	+				-0.6
1,539,927	+				+1.3
1,539,927	+				+0.2
1,539,928	-				-1.6
1,539,928	-				+0.2
1,539,928	-				-1.5
1,539,928	-				-1.0
1,539,929	+				+0.3
1,539,930	-				+1.6
1,540,030	+				-2.1
1,540,150	+				+1.0
1,540,151	-				-1.7
1,540,261	-				+0.0
1,540,276	-				+1.0
1,540,312	+		PFR28_01414	0.27	+1.5
1,540,312	+		PFR28_01414	0.27	-1.7
1,540,313	-		PFR28_01414	0.27	-1.9
1,540,313	-		PFR28_01414	0.27	-2.1
1,540,319	+		PFR28_01414	0.30	+0.9
1,540,319	+		PFR28_01414	0.30	+0.5
1,540,320	-		PFR28_01414	0.31	-1.1
1,540,384	+		PFR28_01414	0.64	+1.8
1,540,384	+		PFR28_01414	0.64	-0.7
1,540,385	-		PFR28_01414	0.65	-1.1
1,540,387	+		PFR28_01414	0.66	+2.2
1,540,387	+		PFR28_01414	0.66	-0.2
1,540,387	+		PFR28_01414	0.66	-1.3
1,540,388	-		PFR28_01414	0.66	-1.3
1,540,388	-		PFR28_01414	0.66	-2.2
1,540,418	+		PFR28_01414	0.82	-2.0
1,540,419	-		PFR28_01414	0.82	+1.3
1,540,419	-		PFR28_01414	0.82	-1.2
1,540,419	-		PFR28_01414	0.82	+0.3
1,540,422	+		PFR28_01414	0.84	-2.2
1,540,422	+		PFR28_01414	0.84	+0.1
1,540,422	+		PFR28_01414	0.84	-0.5
1,540,422	+		PFR28_01414	0.84	-1.9
1,540,422	+		PFR28_01414	0.84	-0.2
1,540,423	-		PFR28_01414	0.84	+1.5
1,540,423	-		PFR28_01414	0.84	+1.6
1,540,423	-		PFR28_01414	0.84	+0.2
1,540,423	-		PFR28_01414	0.84	-0.9
1,540,423	-		PFR28_01414	0.84	+1.1
1,540,423	-		PFR28_01414	0.84	-1.1
1,540,423	-		PFR28_01414	0.84	+0.8
1,540,423	-		PFR28_01414	0.84	+0.1
1,540,423	-		PFR28_01414	0.84	+1.6
1,540,426	+		PFR28_01414	0.86	-0.7
1,540,427	-		PFR28_01414	0.86	+1.2
1,540,427	-		PFR28_01414	0.86	-1.4
1,540,435	+				+0.5
1,540,436	-				-0.7
1,540,451	-				+1.0
1,540,451	-				-3.1
1,540,451	-				+0.4
1,540,484	+				+0.3
1,540,484	+				+0.5
1,540,485	-				+2.0
1,540,485	-				+0.8
1,540,509	+				+0.8
1,540,509	+				+0.5
1,540,509	+				-0.8
1,540,509	+				+1.3
1,540,509	+				-1.1
1,540,510	-				-0.6
1,540,510	-				-0.7
1,540,510	-				+4.4
1,540,543	+				-2.0
1,540,544	-				-0.7
1,540,555	+				+0.9
1,540,555	+				+0.3
1,540,555	+				+0.0
1,540,584	+				-1.6
1,540,584	+				-0.8
1,540,584	+				+0.4
1,540,585	-				-1.2
1,540,585	-				+0.9
1,540,585	-				-2.8
1,540,588	+				-3.4
1,540,588	+				-2.2
1,540,588	+				-0.4
1,540,589	-				-1.4
1,540,589	-				+0.8
1,540,589	-				+0.9
1,540,589	-				-0.6
1,540,589	-				-1.9
1,540,589	-				+0.5
1,540,589	-				+0.2
1,540,589	-				+1.0
1,540,660	+				+0.8
1,540,660	+				-0.9
1,540,660	+				+0.4
1,540,660	+				+0.9
1,540,660	+				+1.8
1,540,661	-				+1.2
1,540,661	-				-0.3
1,540,754	+				+1.0
1,540,754	+				-0.2
1,540,755	-				-1.9
1,540,755	-				+2.5
1,540,775	-				-1.7
1,540,778	+				-1.5
1,540,778	+				-0.8
1,540,778	+				-1.9
1,540,778	+				+0.2
1,540,779	-				-0.3
1,540,779	-				-0.3
1,540,779	-				-2.0
1,540,779	-				-0.9
1,540,779	-				+0.2
1,540,824	+				-1.1
1,540,824	+				+0.9
1,540,824	+				+0.3
1,540,825	-				-0.5
1,540,825	-				-0.6
1,540,825	-				-0.7
1,540,825	-				-0.4
1,540,825	-				+1.1
1,540,825	-				-2.7
1,540,825	-				+0.3
1,540,837	+				-0.7
1,540,837	+				+0.9
1,540,837	+				-0.0
1,540,837	+				-1.9
1,540,838	-				+1.3
1,540,838	-				-2.7
1,540,838	-				-2.3
1,540,838	-				+0.3
1,540,838	-				-0.5
1,540,838	-				-2.0
1,540,838	-				-0.9
1,540,838	-				-1.1
1,540,878	+				-1.1