Strain Fitness in Pseudomonas sp. RS175 around PFR28_01409

Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
1,535,283	-		PFR28_01407	0.67	+3.2
1,535,327	+		PFR28_01407	0.72	-0.5
1,535,338	+		PFR28_01407	0.73	-2.0
1,535,339	-		PFR28_01407	0.73	+0.4
1,535,360	-		PFR28_01407	0.75	-0.7
1,535,360	-		PFR28_01407	0.75	+0.4
1,535,360	-		PFR28_01407	0.75	+0.3
1,535,394	-		PFR28_01407	0.78	-1.2
1,535,634	+				-2.6
1,535,634	+				+0.5
1,535,635	-				+1.3
1,535,635	-				+1.7
1,535,635	-				-1.1
1,535,680	+				+1.6
1,535,681	-				-1.1
1,535,681	-				+0.8
1,535,807	-				-1.6
1,535,815	+				-0.6
1,535,815	+				-0.5
1,535,815	+				+1.0
1,535,815	+				-0.3
1,535,815	+				+1.1
1,535,815	+				-1.1
1,535,815	+				-0.1
1,535,815	+				-0.4
1,535,816	-				+0.3
1,535,816	-				+0.3
1,535,816	-				-2.9
1,535,816	-				-1.7
1,535,816	-				-0.2
1,535,816	-				-0.7
1,535,824	+				-0.6
1,535,824	+				+0.6
1,535,824	+				-0.7
1,535,825	-				-0.2
1,535,825	-				+1.3
1,535,825	-				-0.6
1,535,960	+				-1.5
1,535,996	+		PFR28_01408	0.26	-1.0
1,535,996	+		PFR28_01408	0.26	-0.4
1,535,997	-		PFR28_01408	0.27	-2.3
1,536,025	+		PFR28_01408	0.49	-1.7
1,536,120	+				-2.2
1,536,120	+				+0.5
1,536,120	+				+0.8
1,536,121	-				-3.2
1,536,121	-				-0.3
1,536,121	-				-1.1
1,536,121	-				-0.7
1,536,123	+				+0.2
1,536,123	+				+0.9
1,536,124	-				+0.5
1,536,124	-				-1.1
1,536,146	+				-2.8
1,536,147	-				+2.6
1,536,151	+				+0.1
1,536,152	-				-1.6
1,536,152	-				-0.7
1,536,152	-				+0.2
1,536,152	-				+0.3
1,536,152	-				+0.7
1,536,152	-				+0.9
1,536,152	-				-0.9
1,536,342	+		PFR28_01409	0.18	-1.2
1,536,342	+		PFR28_01409	0.18	+0.5
1,536,342	+		PFR28_01409	0.18	-0.2
1,536,343	-		PFR28_01409	0.18	+1.1
1,536,343	-		PFR28_01409	0.18	-0.1
1,536,343	-		PFR28_01409	0.18	-0.2
1,536,345	+		PFR28_01409	0.19	+1.3
1,536,345	+		PFR28_01409	0.19	-1.6
1,536,345	+		PFR28_01409	0.19	-1.9
1,536,345	+		PFR28_01409	0.19	+0.6
1,536,345	+		PFR28_01409	0.19	+0.1
1,536,346	-		PFR28_01409	0.19	+2.7
1,536,346	-		PFR28_01409	0.19	-0.7
1,536,346	-		PFR28_01409	0.19	-0.8
1,536,346	-		PFR28_01409	0.19	+1.4
1,536,346	-		PFR28_01409	0.19	-1.0
1,536,346	-		PFR28_01409	0.19	-1.1
1,536,346	-		PFR28_01409	0.19	+1.2
1,536,477	+		PFR28_01409	0.49	-2.2
1,536,477	+		PFR28_01409	0.49	+0.0
1,536,477	+		PFR28_01409	0.49	-2.1
1,536,477	+		PFR28_01409	0.49	+0.7
1,536,477	+		PFR28_01409	0.49	-1.2
1,536,477	+		PFR28_01409	0.49	+3.4
1,536,478	-		PFR28_01409	0.49	-1.0
1,536,478	-		PFR28_01409	0.49	+0.7
1,536,478	-		PFR28_01409	0.49	+0.3
1,536,478	-		PFR28_01409	0.49	+0.9
1,536,478	-		PFR28_01409	0.49	-3.3
1,536,478	-		PFR28_01409	0.49	+0.1
1,536,478	-		PFR28_01409	0.49	+0.9
1,536,496	+		PFR28_01409	0.53	-1.2
1,536,496	+		PFR28_01409	0.53	-1.2
1,536,496	+		PFR28_01409	0.53	+0.9
1,536,497	-		PFR28_01409	0.54	+0.6
1,536,497	-		PFR28_01409	0.54	-3.0
1,536,497	-		PFR28_01409	0.54	+0.3
1,536,497	-		PFR28_01409	0.54	-1.1
1,536,732	+				-2.2
1,536,733	-				-1.8
1,536,739	+				+2.6
1,536,780	+				+0.4
1,536,780	+				+0.8
1,536,780	+				+0.5
1,536,799	+				+1.7
1,536,799	+				-0.6
1,536,799	+				-1.5
1,536,799	+				+0.6
1,536,799	+				+1.1
1,536,799	+				+4.3
1,536,799	+				-0.8
1,536,799	+				+0.9
1,536,799	+				-0.5
1,536,799	+				+0.2
1,536,799	+				-2.1
1,536,799	+				+0.5
1,536,799	+				+1.0
1,536,799	+				-3.7
1,536,800	-				-4.3
1,536,800	-				-2.1
1,536,800	-				-3.2
1,536,800	-				-1.9
1,536,800	-				-3.1
1,536,801	+				-1.2
1,536,801	+				-1.1
1,536,801	+				-3.0
1,536,801	+				-2.5
1,536,801	+				+1.5
1,536,801	+				-0.5
1,536,801	+				-0.5
1,536,801	+				-1.6
1,536,801	+				-1.1
1,536,801	+				+0.9
1,536,801	+				+1.0
1,536,801	+				+2.9
1,536,801	+				+1.5
1,536,801	+				-0.5
1,536,801	+				+0.4
1,536,801	+				+1.4
1,536,802	-				-1.5
1,536,802	-				-4.6
1,536,802	-				-4.8
1,536,802	-				-0.5
1,536,831	+				-2.1
1,536,832	-				-2.7
1,536,832	-				-4.5
1,536,832	-				-3.2
1,536,839	+				-4.6
1,536,839	+				-1.9
1,536,867	+				-5.1
1,536,877	-				-2.1
1,536,877	-				-2.0
1,536,978	-		PFR28_01410	0.24	-4.2
1,536,978	-		PFR28_01410	0.24	-1.0
1,536,978	-		PFR28_01410	0.24	-4.5
1,537,126	+		PFR28_01410	0.47	-4.8
1,537,127	-		PFR28_01410	0.47	-4.2
1,537,195	+		PFR28_01410	0.57	-2.2
1,537,195	+		PFR28_01410	0.57	-2.8
1,537,195	+		PFR28_01410	0.57	-1.7
1,537,195	+		PFR28_01410	0.57	+0.8
1,537,195	+		PFR28_01410	0.57	-1.0
1,537,195	+		PFR28_01410	0.57	-5.4
1,537,195	+		PFR28_01410	0.57	-1.0
1,537,196	-		PFR28_01410	0.58	-0.7
1,537,196	-		PFR28_01410	0.58	-4.8
1,537,196	-		PFR28_01410	0.58	-1.5
1,537,196	-		PFR28_01410	0.58	-3.0
1,537,196	-		PFR28_01410	0.58	-4.1
1,537,196	-		PFR28_01410	0.58	-5.3
1,537,196	-		PFR28_01410	0.58	-5.0
1,537,196	-		PFR28_01410	0.58	-3.1
1,537,196	-		PFR28_01410	0.58	-2.4
1,537,196	-		PFR28_01410	0.58	-4.8
1,537,356	+		PFR28_01410	0.83	-4.5
1,537,372	+		PFR28_01410	0.85	-4.6
1,537,372	+		PFR28_01410	0.85	-3.5
1,537,373	-		PFR28_01410	0.85	-4.1
1,537,373	-		PFR28_01410	0.85	-4.0
1,537,468	+				+2.4
1,537,468	+				-1.6
1,537,469	-				+1.1
1,537,469	-				+1.8
1,537,563	+				-1.6
1,537,563	+				+1.0
1,537,563	+				-0.4
1,537,563	+				-1.1
1,537,563	+				-1.0
1,537,563	+				-2.3
1,537,564	-				-2.0
1,537,564	-				-0.6
1,537,564	-				-0.4
1,537,564	-				-2.7
1,537,605	+				-1.6
1,537,605	+				-0.8
1,537,606	-				-0.2