Strain Fitness in Pseudomonas sp. RS175 around PFR28_01289

Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
1,401,115	+				+0.2
1,401,169	+		PFR28_01288	0.14	-1.1
1,401,169	+		PFR28_01288	0.14	+0.8
1,401,169	+		PFR28_01288	0.14	-1.3
1,401,170	-		PFR28_01288	0.15	-0.1
1,401,170	-		PFR28_01288	0.15	+0.4
1,401,170	-		PFR28_01288	0.15	-2.0
1,401,265	+		PFR28_01288	0.29	-1.4
1,401,266	-		PFR28_01288	0.29	-0.2
1,401,266	-		PFR28_01288	0.29	-2.2
1,401,286	+		PFR28_01288	0.32	+0.2
1,401,287	-		PFR28_01288	0.32	-0.2
1,401,287	-		PFR28_01288	0.32	-1.3
1,401,304	+		PFR28_01288	0.34	+0.9
1,401,305	-		PFR28_01288	0.35	+2.4
1,401,305	-		PFR28_01288	0.35	-1.8
1,401,421	+		PFR28_01288	0.52	+2.1
1,401,421	+		PFR28_01288	0.52	-0.9
1,401,421	+		PFR28_01288	0.52	+0.8
1,401,421	+		PFR28_01288	0.52	+1.0
1,401,421	+		PFR28_01288	0.52	-1.0
1,401,421	+		PFR28_01288	0.52	-1.5
1,401,421	+		PFR28_01288	0.52	-0.1
1,401,421	+		PFR28_01288	0.52	+2.3
1,401,421	+		PFR28_01288	0.52	-1.2
1,401,421	+		PFR28_01288	0.52	-0.3
1,401,421	+		PFR28_01288	0.52	+0.9
1,401,421	+		PFR28_01288	0.52	+0.3
1,401,421	+		PFR28_01288	0.52	+1.5
1,401,421	+		PFR28_01288	0.52	-0.7
1,401,422	-		PFR28_01288	0.52	-2.6
1,401,422	-		PFR28_01288	0.52	-1.5
1,401,422	-		PFR28_01288	0.52	-1.9
1,401,422	-		PFR28_01288	0.52	+0.7
1,401,422	-		PFR28_01288	0.52	-1.2
1,401,422	-		PFR28_01288	0.52	-1.0
1,401,422	-		PFR28_01288	0.52	-0.9
1,401,422	-		PFR28_01288	0.52	+0.8
1,401,422	-		PFR28_01288	0.52	-1.9
1,401,422	-		PFR28_01288	0.52	-0.4
1,401,422	-		PFR28_01288	0.52	+2.7
1,401,422	-		PFR28_01288	0.52	-1.7
1,401,422	-		PFR28_01288	0.52	+0.7
1,401,425	+		PFR28_01288	0.52	+1.2
1,401,425	+		PFR28_01288	0.52	-1.1
1,401,425	+		PFR28_01288	0.52	-0.8
1,401,426	-		PFR28_01288	0.52	-0.8
1,401,426	-		PFR28_01288	0.52	-0.4
1,401,426	-		PFR28_01288	0.52	-1.2
1,401,426	-		PFR28_01288	0.52	+1.8
1,401,427	+		PFR28_01288	0.53	+1.3
1,401,427	+		PFR28_01288	0.53	+2.1
1,401,427	+		PFR28_01288	0.53	-1.8
1,401,427	+		PFR28_01288	0.53	+0.3
1,401,427	+		PFR28_01288	0.53	+0.9
1,401,427	+		PFR28_01288	0.53	+0.3
1,401,428	-		PFR28_01288	0.53	-1.4
1,401,484	+		PFR28_01288	0.61	-0.4
1,401,484	+		PFR28_01288	0.61	-0.4
1,401,484	+		PFR28_01288	0.61	-1.6
1,401,485	-		PFR28_01288	0.61	+0.2
1,401,485	-		PFR28_01288	0.61	+0.8
1,401,600	+		PFR28_01288	0.78	+0.5
1,401,600	+		PFR28_01288	0.78	-2.4
1,401,601	-		PFR28_01288	0.78	+0.6
1,401,845	+				-2.3
1,401,845	+				+0.1
1,401,845	+				+1.1
1,401,845	+				+0.5
1,401,845	+				+0.3
1,401,845	+				-0.8
1,401,845	+				-0.1
1,401,845	+				+0.9
1,401,845	+				+2.7
1,401,845	+				+2.5
1,401,845	+				+0.6
1,401,846	-				-0.2
1,401,846	-				-1.8
1,401,846	-				-0.2
1,401,846	-				-0.6
1,401,846	-				+0.4
1,401,846	-				+0.3
1,401,846	-				-0.6
1,401,846	-				+0.8
1,401,849	+				+0.2
1,401,850	-				+4.7
1,401,964	+				+0.1
1,401,964	+				-0.1
1,401,965	-				-1.1
1,401,966	+				+1.5
1,401,966	+				-0.6
1,401,967	-				-0.1
1,401,967	-				+0.9
1,401,967	-				-0.8
1,401,967	-				+1.1
1,401,967	-				-0.8
1,402,067	+				+0.7
1,402,067	+				+0.8
1,402,067	+				-0.6
1,402,068	-				+1.8
1,402,068	-				-1.5
1,402,068	-				-0.7
1,402,068	-				+0.2
1,402,173	+				+1.4
1,402,173	+				-0.6
1,402,174	-		PFR28_01289	0.10	-2.3
1,402,174	-		PFR28_01289	0.10	+1.7
1,402,174	-		PFR28_01289	0.10	-0.6
1,402,236	+		PFR28_01289	0.19	-0.7
1,402,237	-		PFR28_01289	0.19	-0.1
1,402,389	+		PFR28_01289	0.41	-2.8
1,402,390	-		PFR28_01289	0.41	+0.8
1,402,440	+		PFR28_01289	0.48	+0.5
1,402,441	-		PFR28_01289	0.48	+2.2
1,402,441	-		PFR28_01289	0.48	+0.3
1,402,533	+		PFR28_01289	0.61	+2.3
1,402,533	+		PFR28_01289	0.61	-2.8
1,402,533	+		PFR28_01289	0.61	+1.6
1,402,534	-		PFR28_01289	0.62	+0.9
1,402,534	-		PFR28_01289	0.62	+4.3
1,402,534	-		PFR28_01289	0.62	+0.4
1,402,534	-		PFR28_01289	0.62	+0.8
1,402,534	-		PFR28_01289	0.62	+0.6
1,402,560	+		PFR28_01289	0.65	-1.4
1,402,560	+		PFR28_01289	0.65	-2.2
1,402,560	+		PFR28_01289	0.65	-1.9
1,402,560	+		PFR28_01289	0.65	-1.1
1,402,560	+		PFR28_01289	0.65	+0.5
1,402,561	-		PFR28_01289	0.65	+1.9
1,402,561	-		PFR28_01289	0.65	+0.9
1,402,638	+		PFR28_01289	0.76	+0.3
1,402,639	-		PFR28_01289	0.77	-0.2
1,402,676	+		PFR28_01289	0.82	+0.7
1,402,692	+		PFR28_01289	0.84	+0.2
1,402,692	+		PFR28_01289	0.84	+0.1
1,402,692	+		PFR28_01289	0.84	-0.3
1,402,693	-		PFR28_01289	0.84	-0.8
1,402,693	-		PFR28_01289	0.84	-1.8
1,402,693	-		PFR28_01289	0.84	+1.2
1,402,693	-		PFR28_01289	0.84	-4.0
1,402,735	+				+0.2
1,402,735	+				+1.1
1,402,995	-		PFR28_01290	0.22	-0.5
1,403,005	+		PFR28_01290	0.23	+2.1
1,403,006	-		PFR28_01290	0.23	-0.7
1,403,006	-		PFR28_01290	0.23	+0.1
1,403,345	+		PFR28_01290	0.63	-1.4
1,403,534	+		PFR28_01290	0.85	-1.3
1,403,534	+		PFR28_01290	0.85	+0.8
1,403,534	+		PFR28_01290	0.85	+0.0
1,403,534	+		PFR28_01290	0.85	-0.9
1,403,535	-		PFR28_01290	0.86	+0.1
1,403,535	-		PFR28_01290	0.86	+2.7
1,403,535	-		PFR28_01290	0.86	-2.0
1,403,535	-		PFR28_01290	0.86	-0.2
1,403,535	-		PFR28_01290	0.86	-0.2
1,403,535	-		PFR28_01290	0.86	+3.4
1,403,535	-		PFR28_01290	0.86	-0.1
1,403,662	-				-0.3
1,403,662	-				-2.3
1,403,795	-				+1.4