Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00745 and PFR28_00746 are separated by 81 nucleotides PFR28_00746 and PFR28_00747 are separated by 4 nucleotides PFR28_00747 and PFR28_00748 are separated by 14 nucleotides PFR28_00748 and PFR28_00749 are separated by 50 nucleotides
PFR28_00745: PFR28_00745 - Putative multidrug export ATP-binding/permease protein, at 788,817 to 790,649
_00745
PFR28_00746: PFR28_00746 - Peptidyl-prolyl cis-trans isomerase A, at 790,731 to 791,297
_00746
PFR28_00747: PFR28_00747 - (E)-2-((N-methylformamido)methylene)succinate hydrolase, at 791,302 to 792,105
_00747
PFR28_00748: PFR28_00748 - HTH-type transcriptional regulator YhaJ, at 792,120 to 793,043
_00748
PFR28_00749: PFR28_00749 - hypothetical protein, at 793,094 to 793,408
_00749
Position (kb) 791
792
793 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 790.555 kb on + strand at 790.555 kb on + strand at 790.555 kb on + strand at 790.555 kb on + strand at 790.556 kb on - strand at 790.556 kb on - strand at 790.556 kb on - strand at 790.556 kb on - strand at 790.558 kb on + strand at 790.558 kb on + strand at 790.558 kb on + strand at 790.558 kb on + strand at 790.558 kb on + strand at 790.559 kb on - strand at 790.559 kb on - strand at 790.559 kb on - strand at 790.559 kb on - strand at 790.559 kb on - strand at 790.559 kb on - strand at 790.559 kb on - strand at 790.559 kb on - strand at 790.559 kb on - strand at 790.564 kb on + strand at 790.564 kb on + strand at 790.564 kb on + strand at 790.564 kb on + strand at 790.565 kb on - strand at 790.565 kb on - strand at 790.565 kb on - strand at 790.565 kb on - strand at 790.565 kb on - strand at 790.565 kb on - strand at 790.565 kb on - strand at 790.653 kb on + strand at 790.653 kb on + strand at 790.653 kb on + strand at 790.653 kb on + strand at 790.653 kb on + strand at 790.653 kb on + strand at 790.654 kb on - strand at 790.657 kb on + strand at 790.657 kb on + strand at 790.658 kb on - strand at 790.658 kb on - strand at 790.732 kb on + strand at 790.733 kb on - strand at 790.980 kb on + strand, within PFR28_00746 at 790.980 kb on + strand, within PFR28_00746 at 790.981 kb on - strand, within PFR28_00746 at 790.981 kb on - strand, within PFR28_00746 at 790.985 kb on + strand, within PFR28_00746 at 790.986 kb on - strand, within PFR28_00746 at 791.110 kb on + strand, within PFR28_00746 at 791.111 kb on - strand, within PFR28_00746 at 791.211 kb on + strand, within PFR28_00746 at 791.211 kb on + strand, within PFR28_00746 at 791.211 kb on + strand, within PFR28_00746 at 791.211 kb on + strand, within PFR28_00746 at 791.212 kb on - strand, within PFR28_00746 at 791.212 kb on - strand, within PFR28_00746 at 791.212 kb on - strand, within PFR28_00746 at 791.212 kb on - strand, within PFR28_00746 at 791.212 kb on - strand, within PFR28_00746 at 791.437 kb on + strand, within PFR28_00747 at 791.437 kb on + strand, within PFR28_00747 at 791.437 kb on + strand, within PFR28_00747 at 791.437 kb on + strand, within PFR28_00747 at 791.437 kb on + strand, within PFR28_00747 at 791.437 kb on + strand, within PFR28_00747 at 791.437 kb on + strand, within PFR28_00747 at 791.437 kb on + strand, within PFR28_00747 at 791.437 kb on + strand, within PFR28_00747 at 791.437 kb on + strand, within PFR28_00747 at 791.437 kb on + strand, within PFR28_00747 at 791.437 kb on + strand, within PFR28_00747 at 791.437 kb on + strand, within PFR28_00747 at 791.437 kb on + strand, within PFR28_00747 at 791.438 kb on - strand, within PFR28_00747 at 791.438 kb on - strand, within PFR28_00747 at 791.438 kb on - strand, within PFR28_00747 at 791.438 kb on - strand, within PFR28_00747 at 791.438 kb on - strand, within PFR28_00747 at 791.438 kb on - strand, within PFR28_00747 at 791.438 kb on - strand, within PFR28_00747 at 791.438 kb on - strand, within PFR28_00747 at 791.438 kb on - strand, within PFR28_00747 at 791.438 kb on - strand, within PFR28_00747 at 791.438 kb on - strand, within PFR28_00747 at 791.441 kb on + strand, within PFR28_00747 at 791.441 kb on + strand, within PFR28_00747 at 791.441 kb on + strand, within PFR28_00747 at 791.441 kb on + strand, within PFR28_00747 at 791.441 kb on + strand, within PFR28_00747 at 791.441 kb on + strand, within PFR28_00747 at 791.441 kb on + strand, within PFR28_00747 at 791.441 kb on + strand, within PFR28_00747 at 791.441 kb on + strand, within PFR28_00747 at 791.441 kb on + strand, within PFR28_00747 at 791.441 kb on + strand, within PFR28_00747 at 791.442 kb on - strand, within PFR28_00747 at 791.442 kb on - strand, within PFR28_00747 at 791.442 kb on - strand, within PFR28_00747 at 791.442 kb on - strand, within PFR28_00747 at 791.442 kb on - strand, within PFR28_00747 at 791.442 kb on - strand, within PFR28_00747 at 791.442 kb on - strand, within PFR28_00747 at 791.468 kb on + strand, within PFR28_00747 at 791.468 kb on + strand, within PFR28_00747 at 791.468 kb on + strand, within PFR28_00747 at 791.469 kb on - strand, within PFR28_00747 at 791.469 kb on - strand, within PFR28_00747 at 791.469 kb on - strand, within PFR28_00747 at 791.564 kb on + strand, within PFR28_00747 at 791.564 kb on + strand, within PFR28_00747 at 791.564 kb on + strand, within PFR28_00747 at 791.564 kb on + strand, within PFR28_00747 at 791.564 kb on + strand, within PFR28_00747 at 791.564 kb on + strand, within PFR28_00747 at 791.565 kb on - strand, within PFR28_00747 at 791.565 kb on - strand, within PFR28_00747 at 791.565 kb on - strand, within PFR28_00747 at 791.565 kb on - strand, within PFR28_00747 at 791.565 kb on - strand, within PFR28_00747 at 791.565 kb on - strand, within PFR28_00747 at 791.909 kb on + strand, within PFR28_00747 at 792.059 kb on + strand at 792.068 kb on + strand at 792.069 kb on - strand at 792.069 kb on - strand at 792.098 kb on + strand at 792.098 kb on + strand at 792.098 kb on + strand at 792.099 kb on - strand at 792.099 kb on - strand at 792.099 kb on - strand at 792.232 kb on + strand, within PFR28_00748 at 792.232 kb on + strand, within PFR28_00748 at 792.232 kb on + strand, within PFR28_00748 at 792.233 kb on - strand, within PFR28_00748 at 792.233 kb on - strand, within PFR28_00748 at 792.233 kb on - strand, within PFR28_00748 at 792.238 kb on + strand, within PFR28_00748 at 792.238 kb on + strand, within PFR28_00748 at 792.238 kb on + strand, within PFR28_00748 at 792.238 kb on + strand, within PFR28_00748 at 792.238 kb on + strand, within PFR28_00748 at 792.238 kb on + strand, within PFR28_00748 at 792.238 kb on + strand, within PFR28_00748 at 792.238 kb on + strand, within PFR28_00748 at 792.238 kb on + strand, within PFR28_00748 at 792.238 kb on + strand, within PFR28_00748 at 792.238 kb on + strand, within PFR28_00748 at 792.238 kb on + strand, within PFR28_00748 at 792.238 kb on + strand, within PFR28_00748 at 792.238 kb on + strand, within PFR28_00748 at 792.238 kb on + strand, within PFR28_00748 at 792.238 kb on + strand, within PFR28_00748 at 792.239 kb on - strand, within PFR28_00748 at 792.239 kb on - strand, within PFR28_00748 at 792.239 kb on - strand, within PFR28_00748 at 792.239 kb on - strand, within PFR28_00748 at 792.239 kb on - strand, within PFR28_00748 at 792.239 kb on - strand, within PFR28_00748 at 792.239 kb on - strand, within PFR28_00748 at 792.239 kb on - strand, within PFR28_00748 at 792.284 kb on + strand, within PFR28_00748 at 792.285 kb on - strand, within PFR28_00748 at 792.285 kb on - strand, within PFR28_00748 at 792.285 kb on - strand, within PFR28_00748 at 792.624 kb on + strand, within PFR28_00748 at 792.624 kb on + strand, within PFR28_00748 at 792.624 kb on + strand, within PFR28_00748 at 792.624 kb on + strand, within PFR28_00748 at 792.624 kb on + strand, within PFR28_00748 at 792.624 kb on + strand, within PFR28_00748 at 792.625 kb on - strand, within PFR28_00748 at 792.625 kb on - strand, within PFR28_00748 at 792.625 kb on - strand, within PFR28_00748 at 792.625 kb on - strand, within PFR28_00748 at 792.625 kb on - strand, within PFR28_00748 at 792.625 kb on - strand, within PFR28_00748 at 792.625 kb on - strand, within PFR28_00748 at 792.708 kb on + strand, within PFR28_00748 at 792.709 kb on - strand, within PFR28_00748 at 792.728 kb on - strand, within PFR28_00748 at 792.928 kb on + strand, within PFR28_00748 at 792.928 kb on + strand, within PFR28_00748 at 792.928 kb on + strand, within PFR28_00748 at 792.928 kb on + strand, within PFR28_00748 at 792.928 kb on + strand, within PFR28_00748 at 792.929 kb on - strand, within PFR28_00748 at 792.929 kb on - strand, within PFR28_00748 at 792.929 kb on - strand, within PFR28_00748 at 792.929 kb on - strand, within PFR28_00748 at 792.929 kb on - strand, within PFR28_00748 at 792.929 kb on - strand, within PFR28_00748 at 792.994 kb on - strand at 793.043 kb on + strand at 793.043 kb on + strand at 793.044 kb on - strand at 793.062 kb on + strand at 793.063 kb on - strand at 793.063 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct remove 790,555 + -0.0 790,555 + +0.8 790,555 + -0.5 790,555 + -1.5 790,556 - +3.1 790,556 - -1.6 790,556 - +0.6 790,556 - +1.9 790,558 + +1.1 790,558 + +1.2 790,558 + -0.0 790,558 + -0.2 790,558 + -1.6 790,559 - +1.1 790,559 - -1.2 790,559 - -1.6 790,559 - -1.6 790,559 - +0.3 790,559 - +0.7 790,559 - -1.8 790,559 - -0.6 790,559 - -3.4 790,564 + +2.3 790,564 + +0.3 790,564 + +0.8 790,564 + +1.1 790,565 - -0.9 790,565 - -0.6 790,565 - -1.0 790,565 - +1.7 790,565 - -1.1 790,565 - -0.7 790,565 - +0.9 790,653 + -1.8 790,653 + -0.3 790,653 + -3.1 790,653 + +1.5 790,653 + -1.3 790,653 + +0.3 790,654 - -2.2 790,657 + -0.6 790,657 + -0.5 790,658 - +0.0 790,658 - +2.9 790,732 + -0.7 790,733 - +0.1 790,980 + PFR28_00746 0.44 +1.2 790,980 + PFR28_00746 0.44 +0.6 790,981 - PFR28_00746 0.44 +0.4 790,981 - PFR28_00746 0.44 -1.0 790,985 + PFR28_00746 0.45 +0.8 790,986 - PFR28_00746 0.45 -0.7 791,110 + PFR28_00746 0.67 +0.5 791,111 - PFR28_00746 0.67 -1.1 791,211 + PFR28_00746 0.85 -0.2 791,211 + PFR28_00746 0.85 -1.0 791,211 + PFR28_00746 0.85 -1.7 791,211 + PFR28_00746 0.85 -0.7 791,212 - PFR28_00746 0.85 +1.2 791,212 - PFR28_00746 0.85 -1.0 791,212 - PFR28_00746 0.85 +0.3 791,212 - PFR28_00746 0.85 -1.1 791,212 - PFR28_00746 0.85 -0.6 791,437 + PFR28_00747 0.17 -0.6 791,437 + PFR28_00747 0.17 +0.3 791,437 + PFR28_00747 0.17 -2.1 791,437 + PFR28_00747 0.17 -2.6 791,437 + PFR28_00747 0.17 -2.3 791,437 + PFR28_00747 0.17 -1.3 791,437 + PFR28_00747 0.17 -1.1 791,437 + PFR28_00747 0.17 -0.7 791,437 + PFR28_00747 0.17 +1.4 791,437 + PFR28_00747 0.17 -0.1 791,437 + PFR28_00747 0.17 -1.5 791,437 + PFR28_00747 0.17 -0.2 791,437 + PFR28_00747 0.17 -0.9 791,437 + PFR28_00747 0.17 +1.6 791,438 - PFR28_00747 0.17 +1.6 791,438 - PFR28_00747 0.17 -3.6 791,438 - PFR28_00747 0.17 -1.6 791,438 - PFR28_00747 0.17 -0.9 791,438 - PFR28_00747 0.17 -1.1 791,438 - PFR28_00747 0.17 -0.7 791,438 - PFR28_00747 0.17 -1.5 791,438 - PFR28_00747 0.17 -1.4 791,438 - PFR28_00747 0.17 -0.4 791,438 - PFR28_00747 0.17 +0.0 791,438 - PFR28_00747 0.17 -0.8 791,441 + PFR28_00747 0.17 -1.0 791,441 + PFR28_00747 0.17 +0.0 791,441 + PFR28_00747 0.17 +1.0 791,441 + PFR28_00747 0.17 -2.0 791,441 + PFR28_00747 0.17 -1.5 791,441 + PFR28_00747 0.17 -1.3 791,441 + PFR28_00747 0.17 +0.7 791,441 + PFR28_00747 0.17 -0.5 791,441 + PFR28_00747 0.17 -3.0 791,441 + PFR28_00747 0.17 -1.0 791,441 + PFR28_00747 0.17 +0.4 791,442 - PFR28_00747 0.17 -2.7 791,442 - PFR28_00747 0.17 -0.1 791,442 - PFR28_00747 0.17 -3.5 791,442 - PFR28_00747 0.17 -3.6 791,442 - PFR28_00747 0.17 -1.2 791,442 - PFR28_00747 0.17 -2.4 791,442 - PFR28_00747 0.17 -0.1 791,468 + PFR28_00747 0.21 -0.2 791,468 + PFR28_00747 0.21 +2.2 791,468 + PFR28_00747 0.21 +0.3 791,469 - PFR28_00747 0.21 +0.8 791,469 - PFR28_00747 0.21 +1.7 791,469 - PFR28_00747 0.21 -2.3 791,564 + PFR28_00747 0.33 -0.8 791,564 + PFR28_00747 0.33 +4.1 791,564 + PFR28_00747 0.33 +0.8 791,564 + PFR28_00747 0.33 +1.7 791,564 + PFR28_00747 0.33 +1.0 791,564 + PFR28_00747 0.33 -1.5 791,565 - PFR28_00747 0.33 +1.8 791,565 - PFR28_00747 0.33 -1.6 791,565 - PFR28_00747 0.33 -1.1 791,565 - PFR28_00747 0.33 -0.9 791,565 - PFR28_00747 0.33 -3.0 791,565 - PFR28_00747 0.33 +1.4 791,909 + PFR28_00747 0.75 -2.3 792,059 + -1.8 792,068 + +0.8 792,069 - -1.2 792,069 - +3.0 792,098 + -0.2 792,098 + +1.5 792,098 + +1.9 792,099 - +0.1 792,099 - +2.1 792,099 - -1.6 792,232 + PFR28_00748 0.12 +0.4 792,232 + PFR28_00748 0.12 -0.3 792,232 + PFR28_00748 0.12 +1.7 792,233 - PFR28_00748 0.12 -1.7 792,233 - PFR28_00748 0.12 +1.1 792,233 - PFR28_00748 0.12 -1.2 792,238 + PFR28_00748 0.13 +1.6 792,238 + PFR28_00748 0.13 -2.8 792,238 + PFR28_00748 0.13 -1.2 792,238 + PFR28_00748 0.13 -2.5 792,238 + PFR28_00748 0.13 -2.9 792,238 + PFR28_00748 0.13 -1.7 792,238 + PFR28_00748 0.13 -0.3 792,238 + PFR28_00748 0.13 +1.7 792,238 + PFR28_00748 0.13 -1.8 792,238 + PFR28_00748 0.13 -0.5 792,238 + PFR28_00748 0.13 +0.3 792,238 + PFR28_00748 0.13 +1.4 792,238 + PFR28_00748 0.13 -1.7 792,238 + PFR28_00748 0.13 -1.7 792,238 + PFR28_00748 0.13 -2.6 792,238 + PFR28_00748 0.13 +0.5 792,239 - PFR28_00748 0.13 -1.3 792,239 - PFR28_00748 0.13 +0.3 792,239 - PFR28_00748 0.13 -0.5 792,239 - PFR28_00748 0.13 -1.2 792,239 - PFR28_00748 0.13 -1.5 792,239 - PFR28_00748 0.13 -0.5 792,239 - PFR28_00748 0.13 +1.6 792,239 - PFR28_00748 0.13 -3.3 792,284 + PFR28_00748 0.18 +4.9 792,285 - PFR28_00748 0.18 +0.8 792,285 - PFR28_00748 0.18 -0.3 792,285 - PFR28_00748 0.18 -0.0 792,624 + PFR28_00748 0.55 +0.2 792,624 + PFR28_00748 0.55 -0.3 792,624 + PFR28_00748 0.55 +1.3 792,624 + PFR28_00748 0.55 -1.6 792,624 + PFR28_00748 0.55 -0.2 792,624 + PFR28_00748 0.55 +0.9 792,625 - PFR28_00748 0.55 +0.1 792,625 - PFR28_00748 0.55 +1.7 792,625 - PFR28_00748 0.55 -0.3 792,625 - PFR28_00748 0.55 +1.8 792,625 - PFR28_00748 0.55 -2.6 792,625 - PFR28_00748 0.55 -1.7 792,625 - PFR28_00748 0.55 +0.3 792,708 + PFR28_00748 0.64 -0.8 792,709 - PFR28_00748 0.64 +0.5 792,728 - PFR28_00748 0.66 +0.4 792,928 + PFR28_00748 0.87 -0.4 792,928 + PFR28_00748 0.87 +0.0 792,928 + PFR28_00748 0.87 +1.8 792,928 + PFR28_00748 0.87 -2.2 792,928 + PFR28_00748 0.87 +0.6 792,929 - PFR28_00748 0.88 +0.4 792,929 - PFR28_00748 0.88 -0.2 792,929 - PFR28_00748 0.88 -1.0 792,929 - PFR28_00748 0.88 -2.1 792,929 - PFR28_00748 0.88 -0.4 792,929 - PFR28_00748 0.88 -1.2 792,994 - +2.2 793,043 + -0.5 793,043 + +0.1 793,044 - -0.7 793,062 + -0.2 793,063 - -0.1 793,063 - -0.6
Or see this region's nucleotide sequence