Strain Fitness in Pseudomonas sp. RS175 around PFR28_00746

Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00745 and PFR28_00746 are separated by 81 nucleotidesPFR28_00746 and PFR28_00747 are separated by 4 nucleotidesPFR28_00747 and PFR28_00748 are separated by 14 nucleotides PFR28_00745: PFR28_00745 - Putative multidrug export ATP-binding/permease protein, at 788,817 to 790,649 _00745 PFR28_00746: PFR28_00746 - Peptidyl-prolyl cis-trans isomerase A, at 790,731 to 791,297 _00746 PFR28_00747: PFR28_00747 - (E)-2-((N-methylformamido)methylene)succinate hydrolase, at 791,302 to 792,105 _00747 PFR28_00748: PFR28_00748 - HTH-type transcriptional regulator YhaJ, at 792,120 to 793,043 _00748 Position (kb) 790 791 792Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 789.910 kb on + strand, within PFR28_00745at 789.911 kb on - strand, within PFR28_00745at 789.911 kb on - strand, within PFR28_00745at 789.911 kb on - strand, within PFR28_00745at 789.911 kb on - strand, within PFR28_00745at 789.964 kb on + strand, within PFR28_00745at 789.965 kb on - strand, within PFR28_00745at 790.045 kb on + strand, within PFR28_00745at 790.045 kb on + strand, within PFR28_00745at 790.045 kb on + strand, within PFR28_00745at 790.046 kb on - strand, within PFR28_00745at 790.046 kb on - strand, within PFR28_00745at 790.046 kb on - strand, within PFR28_00745at 790.046 kb on - strand, within PFR28_00745at 790.048 kb on + strand, within PFR28_00745at 790.049 kb on - strand, within PFR28_00745at 790.049 kb on - strand, within PFR28_00745at 790.049 kb on - strand, within PFR28_00745at 790.049 kb on - strand, within PFR28_00745at 790.064 kb on - strand, within PFR28_00745at 790.064 kb on - strand, within PFR28_00745at 790.064 kb on - strand, within PFR28_00745at 790.141 kb on + strand, within PFR28_00745at 790.141 kb on + strand, within PFR28_00745at 790.142 kb on - strand, within PFR28_00745at 790.142 kb on - strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.276 kb on + strand, within PFR28_00745at 790.277 kb on - strand, within PFR28_00745at 790.277 kb on - strand, within PFR28_00745at 790.277 kb on - strand, within PFR28_00745at 790.277 kb on - strand, within PFR28_00745at 790.277 kb on - strand, within PFR28_00745at 790.277 kb on - strand, within PFR28_00745at 790.277 kb on - strand, within PFR28_00745at 790.277 kb on - strand, within PFR28_00745at 790.277 kb on - strand, within PFR28_00745at 790.277 kb on - strand, within PFR28_00745at 790.277 kb on - strand, within PFR28_00745at 790.277 kb on - strand, within PFR28_00745at 790.277 kb on - strand, within PFR28_00745at 790.277 kb on - strand, within PFR28_00745at 790.277 kb on - strand, within PFR28_00745at 790.277 kb on - strand, within PFR28_00745at 790.555 kb on + strandat 790.555 kb on + strandat 790.555 kb on + strandat 790.555 kb on + strandat 790.556 kb on - strandat 790.556 kb on - strandat 790.556 kb on - strandat 790.556 kb on - strandat 790.558 kb on + strandat 790.558 kb on + strandat 790.558 kb on + strandat 790.558 kb on + strandat 790.558 kb on + strandat 790.559 kb on - strandat 790.559 kb on - strandat 790.559 kb on - strandat 790.559 kb on - strandat 790.559 kb on - strandat 790.559 kb on - strandat 790.559 kb on - strandat 790.559 kb on - strandat 790.559 kb on - strandat 790.564 kb on + strandat 790.564 kb on + strandat 790.564 kb on + strandat 790.564 kb on + strandat 790.565 kb on - strandat 790.565 kb on - strandat 790.565 kb on - strandat 790.565 kb on - strandat 790.565 kb on - strandat 790.565 kb on - strandat 790.565 kb on - strandat 790.653 kb on + strandat 790.653 kb on + strandat 790.653 kb on + strandat 790.653 kb on + strandat 790.653 kb on + strandat 790.653 kb on + strandat 790.654 kb on - strandat 790.657 kb on + strandat 790.657 kb on + strandat 790.658 kb on - strandat 790.658 kb on - strandat 790.732 kb on + strandat 790.733 kb on - strandat 790.980 kb on + strand, within PFR28_00746at 790.980 kb on + strand, within PFR28_00746at 790.981 kb on - strand, within PFR28_00746at 790.981 kb on - strand, within PFR28_00746at 790.985 kb on + strand, within PFR28_00746at 790.986 kb on - strand, within PFR28_00746at 791.110 kb on + strand, within PFR28_00746at 791.111 kb on - strand, within PFR28_00746at 791.211 kb on + strand, within PFR28_00746at 791.211 kb on + strand, within PFR28_00746at 791.211 kb on + strand, within PFR28_00746at 791.211 kb on + strand, within PFR28_00746at 791.212 kb on - strand, within PFR28_00746at 791.212 kb on - strand, within PFR28_00746at 791.212 kb on - strand, within PFR28_00746at 791.212 kb on - strand, within PFR28_00746at 791.212 kb on - strand, within PFR28_00746at 791.437 kb on + strand, within PFR28_00747at 791.437 kb on + strand, within PFR28_00747at 791.437 kb on + strand, within PFR28_00747at 791.437 kb on + strand, within PFR28_00747at 791.437 kb on + strand, within PFR28_00747at 791.437 kb on + strand, within PFR28_00747at 791.437 kb on + strand, within PFR28_00747at 791.437 kb on + strand, within PFR28_00747at 791.437 kb on + strand, within PFR28_00747at 791.437 kb on + strand, within PFR28_00747at 791.437 kb on + strand, within PFR28_00747at 791.437 kb on + strand, within PFR28_00747at 791.437 kb on + strand, within PFR28_00747at 791.437 kb on + strand, within PFR28_00747at 791.438 kb on - strand, within PFR28_00747at 791.438 kb on - strand, within PFR28_00747at 791.438 kb on - strand, within PFR28_00747at 791.438 kb on - strand, within PFR28_00747at 791.438 kb on - strand, within PFR28_00747at 791.438 kb on - strand, within PFR28_00747at 791.438 kb on - strand, within PFR28_00747at 791.438 kb on - strand, within PFR28_00747at 791.438 kb on - strand, within PFR28_00747at 791.438 kb on - strand, within PFR28_00747at 791.438 kb on - strand, within PFR28_00747at 791.441 kb on + strand, within PFR28_00747at 791.441 kb on + strand, within PFR28_00747at 791.441 kb on + strand, within PFR28_00747at 791.441 kb on + strand, within PFR28_00747at 791.441 kb on + strand, within PFR28_00747at 791.441 kb on + strand, within PFR28_00747at 791.441 kb on + strand, within PFR28_00747at 791.441 kb on + strand, within PFR28_00747at 791.441 kb on + strand, within PFR28_00747at 791.441 kb on + strand, within PFR28_00747at 791.441 kb on + strand, within PFR28_00747at 791.442 kb on - strand, within PFR28_00747at 791.442 kb on - strand, within PFR28_00747at 791.442 kb on - strand, within PFR28_00747at 791.442 kb on - strand, within PFR28_00747at 791.442 kb on - strand, within PFR28_00747at 791.442 kb on - strand, within PFR28_00747at 791.442 kb on - strand, within PFR28_00747at 791.468 kb on + strand, within PFR28_00747at 791.468 kb on + strand, within PFR28_00747at 791.468 kb on + strand, within PFR28_00747at 791.469 kb on - strand, within PFR28_00747at 791.469 kb on - strand, within PFR28_00747at 791.469 kb on - strand, within PFR28_00747at 791.564 kb on + strand, within PFR28_00747at 791.564 kb on + strand, within PFR28_00747at 791.564 kb on + strand, within PFR28_00747at 791.564 kb on + strand, within PFR28_00747at 791.564 kb on + strand, within PFR28_00747at 791.564 kb on + strand, within PFR28_00747at 791.565 kb on - strand, within PFR28_00747at 791.565 kb on - strand, within PFR28_00747at 791.565 kb on - strand, within PFR28_00747at 791.565 kb on - strand, within PFR28_00747at 791.565 kb on - strand, within PFR28_00747at 791.565 kb on - strand, within PFR28_00747at 791.909 kb on + strand, within PFR28_00747at 792.059 kb on + strandat 792.068 kb on + strandat 792.069 kb on - strandat 792.069 kb on - strandat 792.098 kb on + strandat 792.098 kb on + strandat 792.098 kb on + strandat 792.099 kb on - strandat 792.099 kb on - strandat 792.099 kb on - strandat 792.232 kb on + strand, within PFR28_00748at 792.232 kb on + strand, within PFR28_00748at 792.232 kb on + strand, within PFR28_00748at 792.233 kb on - strand, within PFR28_00748at 792.233 kb on - strand, within PFR28_00748at 792.233 kb on - strand, within PFR28_00748at 792.238 kb on + strand, within PFR28_00748at 792.238 kb on + strand, within PFR28_00748at 792.238 kb on + strand, within PFR28_00748at 792.238 kb on + strand, within PFR28_00748at 792.238 kb on + strand, within PFR28_00748at 792.238 kb on + strand, within PFR28_00748at 792.238 kb on + strand, within PFR28_00748at 792.238 kb on + strand, within PFR28_00748at 792.238 kb on + strand, within PFR28_00748at 792.238 kb on + strand, within PFR28_00748at 792.238 kb on + strand, within PFR28_00748at 792.238 kb on + strand, within PFR28_00748at 792.238 kb on + strand, within PFR28_00748at 792.238 kb on + strand, within PFR28_00748at 792.238 kb on + strand, within PFR28_00748at 792.238 kb on + strand, within PFR28_00748at 792.239 kb on - strand, within PFR28_00748at 792.239 kb on - strand, within PFR28_00748at 792.239 kb on - strand, within PFR28_00748at 792.239 kb on - strand, within PFR28_00748at 792.239 kb on - strand, within PFR28_00748at 792.239 kb on - strand, within PFR28_00748at 792.239 kb on - strand, within PFR28_00748at 792.239 kb on - strand, within PFR28_00748at 792.284 kb on + strand, within PFR28_00748at 792.285 kb on - strand, within PFR28_00748at 792.285 kb on - strand, within PFR28_00748at 792.285 kb on - strand, within PFR28_00748

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
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789,910 + PFR28_00745 0.60 +3.1
789,911 - PFR28_00745 0.60 +3.6
789,911 - PFR28_00745 0.60 +1.9
789,911 - PFR28_00745 0.60 +2.9
789,911 - PFR28_00745 0.60 -0.6
789,964 + PFR28_00745 0.63 +1.4
789,965 - PFR28_00745 0.63 -0.4
790,045 + PFR28_00745 0.67 -0.3
790,045 + PFR28_00745 0.67 -1.2
790,045 + PFR28_00745 0.67 +0.5
790,046 - PFR28_00745 0.67 -1.0
790,046 - PFR28_00745 0.67 +2.0
790,046 - PFR28_00745 0.67 +2.2
790,046 - PFR28_00745 0.67 +1.7
790,048 + PFR28_00745 0.67 -0.3
790,049 - PFR28_00745 0.67 -0.2
790,049 - PFR28_00745 0.67 +0.9
790,049 - PFR28_00745 0.67 -0.6
790,049 - PFR28_00745 0.67 -0.7
790,064 - PFR28_00745 0.68 -0.4
790,064 - PFR28_00745 0.68 -2.2
790,064 - PFR28_00745 0.68 -0.6
790,141 + PFR28_00745 0.72 +0.5
790,141 + PFR28_00745 0.72 -2.5
790,142 - PFR28_00745 0.72 +0.3
790,142 - PFR28_00745 0.72 +1.0
790,276 + PFR28_00745 0.80 +2.5
790,276 + PFR28_00745 0.80 +2.7
790,276 + PFR28_00745 0.80 +0.9
790,276 + PFR28_00745 0.80 +0.9
790,276 + PFR28_00745 0.80 +0.0
790,276 + PFR28_00745 0.80 +3.2
790,276 + PFR28_00745 0.80 +1.9
790,276 + PFR28_00745 0.80 +1.4
790,276 + PFR28_00745 0.80 +1.1
790,276 + PFR28_00745 0.80 -1.0
790,276 + PFR28_00745 0.80 -0.8
790,276 + PFR28_00745 0.80 +1.0
790,276 + PFR28_00745 0.80 -1.1
790,276 + PFR28_00745 0.80 +0.8
790,276 + PFR28_00745 0.80 -0.7
790,276 + PFR28_00745 0.80 +0.8
790,276 + PFR28_00745 0.80 +0.8
790,276 + PFR28_00745 0.80 -0.6
790,276 + PFR28_00745 0.80 +2.5
790,276 + PFR28_00745 0.80 -0.1
790,276 + PFR28_00745 0.80 +1.5
790,276 + PFR28_00745 0.80 +1.8
790,276 + PFR28_00745 0.80 -0.7
790,276 + PFR28_00745 0.80 +0.3
790,276 + PFR28_00745 0.80 -0.8
790,276 + PFR28_00745 0.80 +2.4
790,276 + PFR28_00745 0.80 +1.1
790,277 - PFR28_00745 0.80 +1.3
790,277 - PFR28_00745 0.80 -1.7
790,277 - PFR28_00745 0.80 -1.2
790,277 - PFR28_00745 0.80 -1.5
790,277 - PFR28_00745 0.80 +0.2
790,277 - PFR28_00745 0.80 -3.8
790,277 - PFR28_00745 0.80 -1.4
790,277 - PFR28_00745 0.80 -0.0
790,277 - PFR28_00745 0.80 +1.0
790,277 - PFR28_00745 0.80 -1.9
790,277 - PFR28_00745 0.80 -2.2
790,277 - PFR28_00745 0.80 -2.0
790,277 - PFR28_00745 0.80 +0.3
790,277 - PFR28_00745 0.80 +0.5
790,277 - PFR28_00745 0.80 -1.2
790,277 - PFR28_00745 0.80 -0.7
790,555 + -0.0
790,555 + +0.8
790,555 + -0.5
790,555 + -1.5
790,556 - +3.1
790,556 - -1.6
790,556 - +0.6
790,556 - +1.9
790,558 + +1.1
790,558 + +1.2
790,558 + -0.0
790,558 + -0.2
790,558 + -1.6
790,559 - +1.1
790,559 - -1.2
790,559 - -1.6
790,559 - -1.6
790,559 - +0.3
790,559 - +0.7
790,559 - -1.8
790,559 - -0.6
790,559 - -3.4
790,564 + +2.3
790,564 + +0.3
790,564 + +0.8
790,564 + +1.1
790,565 - -0.9
790,565 - -0.6
790,565 - -1.0
790,565 - +1.7
790,565 - -1.1
790,565 - -0.7
790,565 - +0.9
790,653 + -1.8
790,653 + -0.3
790,653 + -3.1
790,653 + +1.5
790,653 + -1.3
790,653 + +0.3
790,654 - -2.2
790,657 + -0.6
790,657 + -0.5
790,658 - +0.0
790,658 - +2.9
790,732 + -0.7
790,733 - +0.1
790,980 + PFR28_00746 0.44 +1.2
790,980 + PFR28_00746 0.44 +0.6
790,981 - PFR28_00746 0.44 +0.4
790,981 - PFR28_00746 0.44 -1.0
790,985 + PFR28_00746 0.45 +0.8
790,986 - PFR28_00746 0.45 -0.7
791,110 + PFR28_00746 0.67 +0.5
791,111 - PFR28_00746 0.67 -1.1
791,211 + PFR28_00746 0.85 -0.2
791,211 + PFR28_00746 0.85 -1.0
791,211 + PFR28_00746 0.85 -1.7
791,211 + PFR28_00746 0.85 -0.7
791,212 - PFR28_00746 0.85 +1.2
791,212 - PFR28_00746 0.85 -1.0
791,212 - PFR28_00746 0.85 +0.3
791,212 - PFR28_00746 0.85 -1.1
791,212 - PFR28_00746 0.85 -0.6
791,437 + PFR28_00747 0.17 -0.6
791,437 + PFR28_00747 0.17 +0.3
791,437 + PFR28_00747 0.17 -2.1
791,437 + PFR28_00747 0.17 -2.6
791,437 + PFR28_00747 0.17 -2.3
791,437 + PFR28_00747 0.17 -1.3
791,437 + PFR28_00747 0.17 -1.1
791,437 + PFR28_00747 0.17 -0.7
791,437 + PFR28_00747 0.17 +1.4
791,437 + PFR28_00747 0.17 -0.1
791,437 + PFR28_00747 0.17 -1.5
791,437 + PFR28_00747 0.17 -0.2
791,437 + PFR28_00747 0.17 -0.9
791,437 + PFR28_00747 0.17 +1.6
791,438 - PFR28_00747 0.17 +1.6
791,438 - PFR28_00747 0.17 -3.6
791,438 - PFR28_00747 0.17 -1.6
791,438 - PFR28_00747 0.17 -0.9
791,438 - PFR28_00747 0.17 -1.1
791,438 - PFR28_00747 0.17 -0.7
791,438 - PFR28_00747 0.17 -1.5
791,438 - PFR28_00747 0.17 -1.4
791,438 - PFR28_00747 0.17 -0.4
791,438 - PFR28_00747 0.17 +0.0
791,438 - PFR28_00747 0.17 -0.8
791,441 + PFR28_00747 0.17 -1.0
791,441 + PFR28_00747 0.17 +0.0
791,441 + PFR28_00747 0.17 +1.0
791,441 + PFR28_00747 0.17 -2.0
791,441 + PFR28_00747 0.17 -1.5
791,441 + PFR28_00747 0.17 -1.3
791,441 + PFR28_00747 0.17 +0.7
791,441 + PFR28_00747 0.17 -0.5
791,441 + PFR28_00747 0.17 -3.0
791,441 + PFR28_00747 0.17 -1.0
791,441 + PFR28_00747 0.17 +0.4
791,442 - PFR28_00747 0.17 -2.7
791,442 - PFR28_00747 0.17 -0.1
791,442 - PFR28_00747 0.17 -3.5
791,442 - PFR28_00747 0.17 -3.6
791,442 - PFR28_00747 0.17 -1.2
791,442 - PFR28_00747 0.17 -2.4
791,442 - PFR28_00747 0.17 -0.1
791,468 + PFR28_00747 0.21 -0.2
791,468 + PFR28_00747 0.21 +2.2
791,468 + PFR28_00747 0.21 +0.3
791,469 - PFR28_00747 0.21 +0.8
791,469 - PFR28_00747 0.21 +1.7
791,469 - PFR28_00747 0.21 -2.3
791,564 + PFR28_00747 0.33 -0.8
791,564 + PFR28_00747 0.33 +4.1
791,564 + PFR28_00747 0.33 +0.8
791,564 + PFR28_00747 0.33 +1.7
791,564 + PFR28_00747 0.33 +1.0
791,564 + PFR28_00747 0.33 -1.5
791,565 - PFR28_00747 0.33 +1.8
791,565 - PFR28_00747 0.33 -1.6
791,565 - PFR28_00747 0.33 -1.1
791,565 - PFR28_00747 0.33 -0.9
791,565 - PFR28_00747 0.33 -3.0
791,565 - PFR28_00747 0.33 +1.4
791,909 + PFR28_00747 0.75 -2.3
792,059 + -1.8
792,068 + +0.8
792,069 - -1.2
792,069 - +3.0
792,098 + -0.2
792,098 + +1.5
792,098 + +1.9
792,099 - +0.1
792,099 - +2.1
792,099 - -1.6
792,232 + PFR28_00748 0.12 +0.4
792,232 + PFR28_00748 0.12 -0.3
792,232 + PFR28_00748 0.12 +1.7
792,233 - PFR28_00748 0.12 -1.7
792,233 - PFR28_00748 0.12 +1.1
792,233 - PFR28_00748 0.12 -1.2
792,238 + PFR28_00748 0.13 +1.6
792,238 + PFR28_00748 0.13 -2.8
792,238 + PFR28_00748 0.13 -1.2
792,238 + PFR28_00748 0.13 -2.5
792,238 + PFR28_00748 0.13 -2.9
792,238 + PFR28_00748 0.13 -1.7
792,238 + PFR28_00748 0.13 -0.3
792,238 + PFR28_00748 0.13 +1.7
792,238 + PFR28_00748 0.13 -1.8
792,238 + PFR28_00748 0.13 -0.5
792,238 + PFR28_00748 0.13 +0.3
792,238 + PFR28_00748 0.13 +1.4
792,238 + PFR28_00748 0.13 -1.7
792,238 + PFR28_00748 0.13 -1.7
792,238 + PFR28_00748 0.13 -2.6
792,238 + PFR28_00748 0.13 +0.5
792,239 - PFR28_00748 0.13 -1.3
792,239 - PFR28_00748 0.13 +0.3
792,239 - PFR28_00748 0.13 -0.5
792,239 - PFR28_00748 0.13 -1.2
792,239 - PFR28_00748 0.13 -1.5
792,239 - PFR28_00748 0.13 -0.5
792,239 - PFR28_00748 0.13 +1.6
792,239 - PFR28_00748 0.13 -3.3
792,284 + PFR28_00748 0.18 +4.9
792,285 - PFR28_00748 0.18 +0.8
792,285 - PFR28_00748 0.18 -0.3
792,285 - PFR28_00748 0.18 -0.0

Or see this region's nucleotide sequence