Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00136 and PFR28_00137 overlap by 8 nucleotides PFR28_00137 and PFR28_00138 are separated by 88 nucleotides PFR28_00138 and PFR28_00139 are separated by 243 nucleotides
PFR28_00136: PFR28_00136 - Sensor histidine kinase RegB, at 159,083 to 160,345
_00136
PFR28_00137: PFR28_00137 - Photosynthetic apparatus regulatory protein RegA, at 160,338 to 160,898
_00137
PFR28_00138: PFR28_00138 - Vitamin B12 transport ATP-binding protein BacA, at 160,987 to 162,714
_00138
PFR28_00139: PFR28_00139 - HTH-type transcriptional regulator LutR, at 162,958 to 163,704
_00139
Position (kb) 160
161
162
163 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 160.950 kb on + strand at 160.950 kb on + strand at 160.950 kb on + strand at 160.951 kb on - strand at 160.951 kb on - strand at 160.951 kb on - strand at 160.951 kb on - strand at 160.951 kb on - strand at 161.079 kb on + strand at 161.173 kb on + strand, within PFR28_00138 at 161.173 kb on + strand, within PFR28_00138 at 161.173 kb on + strand, within PFR28_00138 at 161.173 kb on + strand, within PFR28_00138 at 161.173 kb on + strand, within PFR28_00138 at 161.173 kb on + strand, within PFR28_00138 at 161.173 kb on + strand, within PFR28_00138 at 161.174 kb on - strand, within PFR28_00138 at 161.185 kb on + strand, within PFR28_00138 at 161.185 kb on + strand, within PFR28_00138 at 161.185 kb on + strand, within PFR28_00138 at 161.185 kb on + strand, within PFR28_00138 at 161.186 kb on - strand, within PFR28_00138 at 161.186 kb on - strand, within PFR28_00138 at 161.186 kb on - strand, within PFR28_00138 at 161.237 kb on - strand, within PFR28_00138 at 161.278 kb on + strand, within PFR28_00138 at 161.279 kb on - strand, within PFR28_00138 at 161.287 kb on + strand, within PFR28_00138 at 161.288 kb on - strand, within PFR28_00138 at 161.368 kb on + strand, within PFR28_00138 at 161.368 kb on + strand, within PFR28_00138 at 161.369 kb on - strand, within PFR28_00138 at 161.369 kb on - strand, within PFR28_00138 at 161.369 kb on - strand, within PFR28_00138 at 161.392 kb on + strand, within PFR28_00138 at 161.395 kb on - strand, within PFR28_00138 at 161.549 kb on - strand, within PFR28_00138 at 161.563 kb on + strand, within PFR28_00138 at 161.563 kb on + strand, within PFR28_00138 at 161.564 kb on - strand, within PFR28_00138 at 161.564 kb on - strand, within PFR28_00138 at 161.564 kb on - strand, within PFR28_00138 at 161.564 kb on - strand, within PFR28_00138 at 161.564 kb on - strand, within PFR28_00138 at 161.587 kb on + strand, within PFR28_00138 at 161.587 kb on + strand, within PFR28_00138 at 161.587 kb on + strand, within PFR28_00138 at 161.588 kb on - strand, within PFR28_00138 at 161.725 kb on + strand, within PFR28_00138 at 161.725 kb on + strand, within PFR28_00138 at 161.725 kb on + strand, within PFR28_00138 at 161.726 kb on - strand, within PFR28_00138 at 161.726 kb on - strand, within PFR28_00138 at 161.726 kb on - strand, within PFR28_00138 at 161.784 kb on + strand, within PFR28_00138 at 161.784 kb on + strand, within PFR28_00138 at 161.839 kb on + strand, within PFR28_00138 at 161.887 kb on + strand, within PFR28_00138 at 161.887 kb on + strand, within PFR28_00138 at 161.888 kb on - strand, within PFR28_00138 at 161.888 kb on - strand, within PFR28_00138 at 161.888 kb on - strand, within PFR28_00138 at 161.888 kb on - strand, within PFR28_00138 at 161.980 kb on + strand, within PFR28_00138 at 161.980 kb on + strand, within PFR28_00138 at 161.981 kb on - strand, within PFR28_00138 at 162.313 kb on + strand, within PFR28_00138 at 162.313 kb on + strand, within PFR28_00138 at 162.313 kb on + strand, within PFR28_00138 at 162.314 kb on - strand, within PFR28_00138 at 162.350 kb on - strand, within PFR28_00138 at 162.368 kb on + strand, within PFR28_00138 at 162.368 kb on + strand, within PFR28_00138 at 162.368 kb on + strand, within PFR28_00138 at 162.368 kb on + strand, within PFR28_00138 at 162.368 kb on + strand, within PFR28_00138 at 162.368 kb on + strand, within PFR28_00138 at 162.368 kb on + strand, within PFR28_00138 at 162.368 kb on + strand, within PFR28_00138 at 162.368 kb on + strand, within PFR28_00138 at 162.368 kb on + strand, within PFR28_00138 at 162.368 kb on + strand, within PFR28_00138 at 162.368 kb on + strand, within PFR28_00138 at 162.368 kb on + strand, within PFR28_00138 at 162.368 kb on + strand, within PFR28_00138 at 162.368 kb on + strand, within PFR28_00138 at 162.368 kb on + strand, within PFR28_00138 at 162.368 kb on + strand, within PFR28_00138 at 162.368 kb on + strand, within PFR28_00138 at 162.368 kb on + strand, within PFR28_00138 at 162.369 kb on - strand, within PFR28_00138 at 162.369 kb on - strand, within PFR28_00138 at 162.369 kb on - strand, within PFR28_00138 at 162.369 kb on - strand, within PFR28_00138 at 162.369 kb on - strand, within PFR28_00138 at 162.369 kb on - strand, within PFR28_00138 at 162.369 kb on - strand, within PFR28_00138 at 162.369 kb on - strand, within PFR28_00138 at 162.369 kb on - strand, within PFR28_00138 at 162.369 kb on - strand, within PFR28_00138 at 162.369 kb on - strand, within PFR28_00138 at 162.369 kb on - strand, within PFR28_00138 at 162.369 kb on - strand, within PFR28_00138 at 162.369 kb on - strand, within PFR28_00138 at 162.369 kb on - strand, within PFR28_00138 at 162.369 kb on - strand, within PFR28_00138 at 162.369 kb on - strand, within PFR28_00138 at 162.369 kb on - strand, within PFR28_00138 at 162.369 kb on - strand, within PFR28_00138 at 162.369 kb on - strand, within PFR28_00138 at 162.369 kb on - strand, within PFR28_00138 at 162.369 kb on - strand, within PFR28_00138 at 162.369 kb on - strand, within PFR28_00138 at 162.369 kb on - strand, within PFR28_00138 at 162.370 kb on + strand, within PFR28_00138 at 162.371 kb on - strand, within PFR28_00138 at 162.371 kb on - strand, within PFR28_00138 at 162.371 kb on - strand, within PFR28_00138 at 162.371 kb on - strand, within PFR28_00138 at 162.371 kb on - strand, within PFR28_00138 at 162.511 kb on + strand, within PFR28_00138 at 162.511 kb on + strand, within PFR28_00138 at 162.511 kb on + strand, within PFR28_00138 at 162.511 kb on + strand, within PFR28_00138 at 162.512 kb on - strand, within PFR28_00138 at 162.529 kb on + strand, within PFR28_00138 at 162.529 kb on + strand, within PFR28_00138 at 162.529 kb on + strand, within PFR28_00138 at 162.529 kb on + strand, within PFR28_00138 at 162.530 kb on - strand, within PFR28_00138 at 162.530 kb on - strand, within PFR28_00138 at 162.530 kb on - strand, within PFR28_00138 at 162.530 kb on - strand, within PFR28_00138 at 162.530 kb on - strand, within PFR28_00138 at 162.530 kb on - strand, within PFR28_00138 at 162.581 kb on - strand at 162.581 kb on - strand at 162.581 kb on - strand at 162.732 kb on - strand at 162.732 kb on - strand at 162.749 kb on + strand at 162.750 kb on - strand at 162.750 kb on - strand at 162.783 kb on - strand at 162.786 kb on + strand at 162.786 kb on + strand at 162.786 kb on + strand at 162.786 kb on + strand at 162.786 kb on + strand at 162.786 kb on + strand at 162.786 kb on + strand at 162.786 kb on + strand at 162.786 kb on + strand at 162.786 kb on + strand at 162.786 kb on + strand at 162.786 kb on + strand at 162.786 kb on + strand at 162.787 kb on - strand at 162.787 kb on - strand at 162.787 kb on - strand at 162.787 kb on - strand at 162.787 kb on - strand at 162.787 kb on - strand at 162.787 kb on - strand at 162.787 kb on - strand at 162.787 kb on - strand at 162.787 kb on - strand at 162.787 kb on - strand at 162.787 kb on - strand at 162.787 kb on - strand at 162.787 kb on - strand at 162.787 kb on - strand at 162.787 kb on - strand at 162.788 kb on + strand at 162.788 kb on + strand at 162.788 kb on + strand at 162.789 kb on - strand at 162.789 kb on - strand at 162.789 kb on - strand at 162.789 kb on - strand at 162.789 kb on - strand at 162.789 kb on - strand at 162.790 kb on + strand at 162.790 kb on + strand at 162.790 kb on + strand at 162.790 kb on + strand at 162.790 kb on + strand at 162.790 kb on + strand at 162.790 kb on + strand at 162.790 kb on + strand at 162.790 kb on + strand at 162.790 kb on + strand at 162.790 kb on + strand at 162.790 kb on + strand at 162.790 kb on + strand at 162.790 kb on + strand at 162.790 kb on + strand at 162.790 kb on + strand at 162.790 kb on + strand at 162.790 kb on + strand at 162.790 kb on + strand at 162.791 kb on - strand at 162.791 kb on - strand at 162.791 kb on - strand at 162.791 kb on - strand at 162.791 kb on - strand at 162.791 kb on - strand at 162.791 kb on - strand at 162.791 kb on - strand at 162.791 kb on - strand at 162.791 kb on - strand at 162.791 kb on - strand at 162.791 kb on - strand at 162.888 kb on + strand at 162.888 kb on + strand at 162.918 kb on + strand at 163.112 kb on + strand, within PFR28_00139 at 163.112 kb on + strand, within PFR28_00139 at 163.112 kb on + strand, within PFR28_00139 at 163.113 kb on - strand, within PFR28_00139 at 163.113 kb on - strand, within PFR28_00139 at 163.113 kb on - strand, within PFR28_00139 at 163.113 kb on - strand, within PFR28_00139 at 163.113 kb on - strand, within PFR28_00139 at 163.113 kb on - strand, within PFR28_00139 at 163.119 kb on + strand, within PFR28_00139 at 163.459 kb on + strand, within PFR28_00139 at 163.460 kb on - strand, within PFR28_00139 at 163.460 kb on - strand, within PFR28_00139 at 163.552 kb on + strand, within PFR28_00139 at 163.552 kb on + strand, within PFR28_00139 at 163.552 kb on + strand, within PFR28_00139 at 163.552 kb on + strand, within PFR28_00139 at 163.552 kb on + strand, within PFR28_00139 at 163.552 kb on + strand, within PFR28_00139 at 163.552 kb on + strand, within PFR28_00139 at 163.552 kb on + strand, within PFR28_00139 at 163.552 kb on + strand, within PFR28_00139 at 163.552 kb on + strand, within PFR28_00139 at 163.552 kb on + strand, within PFR28_00139 at 163.552 kb on + strand, within PFR28_00139 at 163.553 kb on - strand, within PFR28_00139 at 163.553 kb on - strand, within PFR28_00139 at 163.553 kb on - strand, within PFR28_00139 at 163.553 kb on - strand, within PFR28_00139 at 163.553 kb on - strand, within PFR28_00139 at 163.553 kb on - strand, within PFR28_00139 at 163.553 kb on - strand, within PFR28_00139 at 163.553 kb on - strand, within PFR28_00139 at 163.553 kb on - strand, within PFR28_00139 at 163.553 kb on - strand, within PFR28_00139 at 163.588 kb on + strand, within PFR28_00139 at 163.589 kb on - strand, within PFR28_00139 at 163.589 kb on - strand, within PFR28_00139 at 163.702 kb on + strand at 163.702 kb on + strand at 163.703 kb on - strand at 163.703 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct remove 160,950 + +2.1 160,950 + +0.8 160,950 + +0.7 160,951 - -1.2 160,951 - +0.4 160,951 - +1.7 160,951 - +2.8 160,951 - +1.0 161,079 + +1.3 161,173 + PFR28_00138 0.11 +1.0 161,173 + PFR28_00138 0.11 +2.3 161,173 + PFR28_00138 0.11 -0.6 161,173 + PFR28_00138 0.11 -0.5 161,173 + PFR28_00138 0.11 +1.8 161,173 + PFR28_00138 0.11 +0.3 161,173 + PFR28_00138 0.11 +1.9 161,174 - PFR28_00138 0.11 -1.7 161,185 + PFR28_00138 0.11 +1.7 161,185 + PFR28_00138 0.11 +0.7 161,185 + PFR28_00138 0.11 +1.0 161,185 + PFR28_00138 0.11 +1.3 161,186 - PFR28_00138 0.12 +1.4 161,186 - PFR28_00138 0.12 +2.5 161,186 - PFR28_00138 0.12 -2.3 161,237 - PFR28_00138 0.14 +2.3 161,278 + PFR28_00138 0.17 -0.2 161,279 - PFR28_00138 0.17 -0.9 161,287 + PFR28_00138 0.17 +1.3 161,288 - PFR28_00138 0.17 -0.0 161,368 + PFR28_00138 0.22 +3.0 161,368 + PFR28_00138 0.22 +2.5 161,369 - PFR28_00138 0.22 +0.7 161,369 - PFR28_00138 0.22 +0.2 161,369 - PFR28_00138 0.22 +0.8 161,392 + PFR28_00138 0.23 +2.1 161,395 - PFR28_00138 0.24 +2.6 161,549 - PFR28_00138 0.33 +1.3 161,563 + PFR28_00138 0.33 +2.9 161,563 + PFR28_00138 0.33 -0.4 161,564 - PFR28_00138 0.33 +2.0 161,564 - PFR28_00138 0.33 -1.7 161,564 - PFR28_00138 0.33 -0.9 161,564 - PFR28_00138 0.33 +2.3 161,564 - PFR28_00138 0.33 +1.8 161,587 + PFR28_00138 0.35 +1.2 161,587 + PFR28_00138 0.35 -0.6 161,587 + PFR28_00138 0.35 -0.3 161,588 - PFR28_00138 0.35 +0.7 161,725 + PFR28_00138 0.43 -0.8 161,725 + PFR28_00138 0.43 -0.6 161,725 + PFR28_00138 0.43 +4.1 161,726 - PFR28_00138 0.43 +1.4 161,726 - PFR28_00138 0.43 +1.2 161,726 - PFR28_00138 0.43 +0.6 161,784 + PFR28_00138 0.46 +1.4 161,784 + PFR28_00138 0.46 +0.9 161,839 + PFR28_00138 0.49 +1.9 161,887 + PFR28_00138 0.52 +0.0 161,887 + PFR28_00138 0.52 -0.4 161,888 - PFR28_00138 0.52 +1.5 161,888 - PFR28_00138 0.52 -1.5 161,888 - PFR28_00138 0.52 +1.6 161,888 - PFR28_00138 0.52 +1.7 161,980 + PFR28_00138 0.57 +0.8 161,980 + PFR28_00138 0.57 +1.0 161,981 - PFR28_00138 0.58 +1.6 162,313 + PFR28_00138 0.77 +0.3 162,313 + PFR28_00138 0.77 +2.2 162,313 + PFR28_00138 0.77 -0.3 162,314 - PFR28_00138 0.77 +0.2 162,350 - PFR28_00138 0.79 +1.0 162,368 + PFR28_00138 0.80 +0.9 162,368 + PFR28_00138 0.80 +1.2 162,368 + PFR28_00138 0.80 +0.9 162,368 + PFR28_00138 0.80 -1.2 162,368 + PFR28_00138 0.80 +0.0 162,368 + PFR28_00138 0.80 +2.4 162,368 + PFR28_00138 0.80 +1.9 162,368 + PFR28_00138 0.80 -0.2 162,368 + PFR28_00138 0.80 +0.8 162,368 + PFR28_00138 0.80 +1.3 162,368 + PFR28_00138 0.80 +1.2 162,368 + PFR28_00138 0.80 +1.8 162,368 + PFR28_00138 0.80 +1.4 162,368 + PFR28_00138 0.80 +0.4 162,368 + PFR28_00138 0.80 +2.3 162,368 + PFR28_00138 0.80 -1.5 162,368 + PFR28_00138 0.80 +0.1 162,368 + PFR28_00138 0.80 +2.2 162,368 + PFR28_00138 0.80 +0.3 162,369 - PFR28_00138 0.80 -1.8 162,369 - PFR28_00138 0.80 +0.9 162,369 - PFR28_00138 0.80 +1.2 162,369 - PFR28_00138 0.80 +0.9 162,369 - PFR28_00138 0.80 +1.1 162,369 - PFR28_00138 0.80 +1.6 162,369 - PFR28_00138 0.80 -0.3 162,369 - PFR28_00138 0.80 -0.5 162,369 - PFR28_00138 0.80 +0.6 162,369 - PFR28_00138 0.80 +0.6 162,369 - PFR28_00138 0.80 +1.9 162,369 - PFR28_00138 0.80 +0.4 162,369 - PFR28_00138 0.80 +1.6 162,369 - PFR28_00138 0.80 +0.9 162,369 - PFR28_00138 0.80 +1.4 162,369 - PFR28_00138 0.80 +0.2 162,369 - PFR28_00138 0.80 +0.7 162,369 - PFR28_00138 0.80 -1.4 162,369 - PFR28_00138 0.80 -0.3 162,369 - PFR28_00138 0.80 +0.0 162,369 - PFR28_00138 0.80 +1.2 162,369 - PFR28_00138 0.80 +0.7 162,369 - PFR28_00138 0.80 -0.5 162,369 - PFR28_00138 0.80 +1.5 162,370 + PFR28_00138 0.80 +0.8 162,371 - PFR28_00138 0.80 +0.9 162,371 - PFR28_00138 0.80 +0.9 162,371 - PFR28_00138 0.80 +0.1 162,371 - PFR28_00138 0.80 +1.4 162,371 - PFR28_00138 0.80 +1.6 162,511 + PFR28_00138 0.88 +0.3 162,511 + PFR28_00138 0.88 +1.3 162,511 + PFR28_00138 0.88 +2.1 162,511 + PFR28_00138 0.88 +0.9 162,512 - PFR28_00138 0.88 -1.3 162,529 + PFR28_00138 0.89 +2.9 162,529 + PFR28_00138 0.89 +0.6 162,529 + PFR28_00138 0.89 +0.8 162,529 + PFR28_00138 0.89 +1.2 162,530 - PFR28_00138 0.89 +1.0 162,530 - PFR28_00138 0.89 +2.0 162,530 - PFR28_00138 0.89 +1.1 162,530 - PFR28_00138 0.89 -0.3 162,530 - PFR28_00138 0.89 +0.5 162,530 - PFR28_00138 0.89 -1.9 162,581 - +1.9 162,581 - +0.2 162,581 - -0.0 162,732 - -3.0 162,732 - +0.2 162,749 + -1.1 162,750 - +2.3 162,750 - +0.2 162,783 - +1.6 162,786 + -1.5 162,786 + -0.2 162,786 + +1.0 162,786 + +0.3 162,786 + -1.1 162,786 + -0.1 162,786 + -1.1 162,786 + +0.8 162,786 + +1.5 162,786 + +1.2 162,786 + -0.4 162,786 + +0.2 162,786 + +1.3 162,787 - -0.9 162,787 - +0.5 162,787 - +0.1 162,787 - -1.1 162,787 - +2.8 162,787 - -0.6 162,787 - +1.4 162,787 - +1.0 162,787 - +0.2 162,787 - +1.9 162,787 - +0.3 162,787 - -0.3 162,787 - +0.2 162,787 - -0.9 162,787 - +3.0 162,787 - +0.6 162,788 + -1.0 162,788 + +2.1 162,788 + -1.3 162,789 - +0.6 162,789 - +1.3 162,789 - +0.5 162,789 - +0.0 162,789 - +1.8 162,789 - +1.8 162,790 + -1.4 162,790 + -0.2 162,790 + +0.9 162,790 + +1.0 162,790 + +0.3 162,790 + -2.2 162,790 + +0.0 162,790 + -0.5 162,790 + +1.7 162,790 + +2.3 162,790 + -2.3 162,790 + -0.4 162,790 + +0.7 162,790 + +1.4 162,790 + -2.6 162,790 + -0.0 162,790 + +2.8 162,790 + -1.3 162,790 + +3.5 162,791 - -2.6 162,791 - +3.1 162,791 - -1.6 162,791 - -0.0 162,791 - +1.5 162,791 - -0.9 162,791 - -1.2 162,791 - -1.3 162,791 - +1.8 162,791 - -0.7 162,791 - -0.9 162,791 - -0.2 162,888 + +1.5 162,888 + +1.3 162,918 + +1.5 163,112 + PFR28_00139 0.21 -0.6 163,112 + PFR28_00139 0.21 +2.4 163,112 + PFR28_00139 0.21 +0.2 163,113 - PFR28_00139 0.21 +1.3 163,113 - PFR28_00139 0.21 +1.5 163,113 - PFR28_00139 0.21 +0.1 163,113 - PFR28_00139 0.21 +1.3 163,113 - PFR28_00139 0.21 +1.5 163,113 - PFR28_00139 0.21 +2.9 163,119 + PFR28_00139 0.22 +1.7 163,459 + PFR28_00139 0.67 +0.1 163,460 - PFR28_00139 0.67 +2.1 163,460 - PFR28_00139 0.67 +3.0 163,552 + PFR28_00139 0.80 -0.6 163,552 + PFR28_00139 0.80 +1.5 163,552 + PFR28_00139 0.80 +3.3 163,552 + PFR28_00139 0.80 +2.0 163,552 + PFR28_00139 0.80 +0.5 163,552 + PFR28_00139 0.80 +1.7 163,552 + PFR28_00139 0.80 +1.0 163,552 + PFR28_00139 0.80 -0.5 163,552 + PFR28_00139 0.80 +1.1 163,552 + PFR28_00139 0.80 +1.0 163,552 + PFR28_00139 0.80 +1.7 163,552 + PFR28_00139 0.80 +1.9 163,553 - PFR28_00139 0.80 +2.3 163,553 - PFR28_00139 0.80 +0.1 163,553 - PFR28_00139 0.80 +0.0 163,553 - PFR28_00139 0.80 +1.3 163,553 - PFR28_00139 0.80 +2.0 163,553 - PFR28_00139 0.80 +0.1 163,553 - PFR28_00139 0.80 +1.0 163,553 - PFR28_00139 0.80 -0.4 163,553 - PFR28_00139 0.80 -0.6 163,553 - PFR28_00139 0.80 +0.0 163,588 + PFR28_00139 0.84 -0.2 163,589 - PFR28_00139 0.84 +3.2 163,589 - PFR28_00139 0.84 +1.1 163,702 + -0.6 163,702 + +0.9 163,703 - -0.4 163,703 - -0.1
Or see this region's nucleotide sequence