Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00133 and PFR28_00134 overlap by 35 nucleotides PFR28_00134 and PFR28_00135 are separated by 188 nucleotides PFR28_00135 and PFR28_00136 are separated by 227 nucleotides
PFR28_00133: PFR28_00133 - Antitoxin YefM, at 157,392 to 157,676
_00133
PFR28_00134: PFR28_00134 - Toxin RelK, at 157,642 to 157,950
_00134
PFR28_00135: PFR28_00135 - hypothetical protein, at 158,139 to 158,855
_00135
PFR28_00136: PFR28_00136 - Sensor histidine kinase RegB, at 159,083 to 160,345
_00136
Position (kb) 158
159 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 157.166 kb on + strand at 157.169 kb on + strand at 157.243 kb on + strand at 157.244 kb on - strand at 157.386 kb on + strand at 157.386 kb on + strand at 157.387 kb on - strand at 157.387 kb on - strand at 157.387 kb on - strand at 157.399 kb on + strand at 157.399 kb on + strand at 157.399 kb on + strand at 157.399 kb on + strand at 157.399 kb on + strand at 157.399 kb on + strand at 157.400 kb on - strand at 157.400 kb on - strand at 157.400 kb on - strand at 157.400 kb on - strand at 157.400 kb on - strand at 157.400 kb on - strand at 157.400 kb on - strand at 157.400 kb on - strand at 157.402 kb on + strand at 157.402 kb on + strand at 157.403 kb on - strand at 157.450 kb on + strand, within PFR28_00133 at 157.450 kb on + strand, within PFR28_00133 at 157.450 kb on + strand, within PFR28_00133 at 157.450 kb on + strand, within PFR28_00133 at 157.451 kb on - strand, within PFR28_00133 at 157.451 kb on - strand, within PFR28_00133 at 157.451 kb on - strand, within PFR28_00133 at 157.451 kb on - strand, within PFR28_00133 at 157.451 kb on - strand, within PFR28_00133 at 157.451 kb on - strand, within PFR28_00133 at 157.451 kb on - strand, within PFR28_00133 at 157.451 kb on - strand, within PFR28_00133 at 157.451 kb on - strand, within PFR28_00133 at 157.501 kb on + strand, within PFR28_00133 at 157.501 kb on + strand, within PFR28_00133 at 157.501 kb on + strand, within PFR28_00133 at 157.501 kb on + strand, within PFR28_00133 at 157.501 kb on + strand, within PFR28_00133 at 157.501 kb on + strand, within PFR28_00133 at 157.501 kb on + strand, within PFR28_00133 at 157.501 kb on + strand, within PFR28_00133 at 157.501 kb on + strand, within PFR28_00133 at 157.502 kb on - strand, within PFR28_00133 at 157.502 kb on - strand, within PFR28_00133 at 157.502 kb on - strand, within PFR28_00133 at 157.502 kb on - strand, within PFR28_00133 at 157.502 kb on - strand, within PFR28_00133 at 157.502 kb on - strand, within PFR28_00133 at 157.502 kb on - strand, within PFR28_00133 at 157.502 kb on - strand, within PFR28_00133 at 157.524 kb on + strand, within PFR28_00133 at 157.524 kb on + strand, within PFR28_00133 at 157.524 kb on + strand, within PFR28_00133 at 157.524 kb on + strand, within PFR28_00133 at 157.524 kb on + strand, within PFR28_00133 at 157.524 kb on + strand, within PFR28_00133 at 157.525 kb on - strand, within PFR28_00133 at 157.525 kb on - strand, within PFR28_00133 at 157.525 kb on - strand, within PFR28_00133 at 157.525 kb on - strand, within PFR28_00133 at 157.532 kb on + strand, within PFR28_00133 at 157.532 kb on + strand, within PFR28_00133 at 157.533 kb on - strand, within PFR28_00133 at 157.548 kb on + strand, within PFR28_00133 at 157.548 kb on + strand, within PFR28_00133 at 157.548 kb on + strand, within PFR28_00133 at 157.548 kb on + strand, within PFR28_00133 at 157.548 kb on + strand, within PFR28_00133 at 157.548 kb on + strand, within PFR28_00133 at 157.548 kb on + strand, within PFR28_00133 at 157.548 kb on + strand, within PFR28_00133 at 157.548 kb on + strand, within PFR28_00133 at 157.548 kb on + strand, within PFR28_00133 at 157.548 kb on + strand, within PFR28_00133 at 157.548 kb on + strand, within PFR28_00133 at 157.549 kb on - strand, within PFR28_00133 at 157.549 kb on - strand, within PFR28_00133 at 157.549 kb on - strand, within PFR28_00133 at 157.549 kb on - strand, within PFR28_00133 at 157.549 kb on - strand, within PFR28_00133 at 157.549 kb on - strand, within PFR28_00133 at 157.549 kb on - strand, within PFR28_00133 at 157.549 kb on - strand, within PFR28_00133 at 157.549 kb on - strand, within PFR28_00133 at 157.549 kb on - strand, within PFR28_00133 at 157.555 kb on + strand, within PFR28_00133 at 157.559 kb on + strand, within PFR28_00133 at 157.559 kb on + strand, within PFR28_00133 at 157.559 kb on + strand, within PFR28_00133 at 157.559 kb on + strand, within PFR28_00133 at 157.559 kb on + strand, within PFR28_00133 at 157.560 kb on - strand, within PFR28_00133 at 157.560 kb on - strand, within PFR28_00133 at 157.582 kb on + strand, within PFR28_00133 at 157.583 kb on - strand, within PFR28_00133 at 157.639 kb on + strand, within PFR28_00133 at 157.640 kb on - strand, within PFR28_00133 at 157.640 kb on - strand, within PFR28_00133 at 157.640 kb on - strand, within PFR28_00133 at 157.675 kb on - strand at 157.694 kb on + strand, within PFR28_00134 at 157.694 kb on + strand, within PFR28_00134 at 157.695 kb on - strand, within PFR28_00134 at 157.695 kb on - strand, within PFR28_00134 at 157.695 kb on - strand, within PFR28_00134 at 157.695 kb on - strand, within PFR28_00134 at 157.726 kb on + strand, within PFR28_00134 at 157.726 kb on + strand, within PFR28_00134 at 157.726 kb on + strand, within PFR28_00134 at 157.726 kb on + strand, within PFR28_00134 at 157.726 kb on + strand, within PFR28_00134 at 157.726 kb on + strand, within PFR28_00134 at 157.727 kb on - strand, within PFR28_00134 at 157.727 kb on - strand, within PFR28_00134 at 157.727 kb on - strand, within PFR28_00134 at 157.727 kb on - strand, within PFR28_00134 at 157.732 kb on + strand, within PFR28_00134 at 157.733 kb on - strand, within PFR28_00134 at 157.733 kb on - strand, within PFR28_00134 at 157.769 kb on + strand, within PFR28_00134 at 157.769 kb on + strand, within PFR28_00134 at 157.769 kb on + strand, within PFR28_00134 at 157.769 kb on + strand, within PFR28_00134 at 157.769 kb on + strand, within PFR28_00134 at 157.770 kb on - strand, within PFR28_00134 at 157.770 kb on - strand, within PFR28_00134 at 157.779 kb on + strand, within PFR28_00134 at 157.845 kb on - strand, within PFR28_00134 at 157.853 kb on - strand, within PFR28_00134 at 157.891 kb on + strand, within PFR28_00134 at 157.891 kb on + strand, within PFR28_00134 at 157.892 kb on - strand, within PFR28_00134 at 157.940 kb on - strand at 157.948 kb on + strand at 157.948 kb on + strand at 157.948 kb on + strand at 157.949 kb on - strand at 157.949 kb on - strand at 157.949 kb on - strand at 157.949 kb on - strand at 157.985 kb on + strand at 157.985 kb on + strand at 157.986 kb on - strand at 157.986 kb on - strand at 157.986 kb on - strand at 157.986 kb on - strand at 158.140 kb on + strand at 158.141 kb on - strand at 158.560 kb on + strand, within PFR28_00135 at 158.570 kb on - strand, within PFR28_00135 at 158.695 kb on + strand, within PFR28_00135 at 158.695 kb on + strand, within PFR28_00135 at 158.696 kb on - strand, within PFR28_00135 at 158.696 kb on - strand, within PFR28_00135 at 158.764 kb on + strand, within PFR28_00135 at 158.764 kb on + strand, within PFR28_00135 at 158.764 kb on + strand, within PFR28_00135 at 158.764 kb on + strand, within PFR28_00135 at 158.764 kb on + strand, within PFR28_00135 at 158.764 kb on + strand, within PFR28_00135 at 158.764 kb on + strand, within PFR28_00135 at 158.764 kb on + strand, within PFR28_00135 at 158.764 kb on + strand, within PFR28_00135 at 158.764 kb on + strand, within PFR28_00135 at 158.765 kb on - strand, within PFR28_00135 at 158.765 kb on - strand, within PFR28_00135 at 158.765 kb on - strand, within PFR28_00135 at 158.765 kb on - strand, within PFR28_00135 at 158.765 kb on - strand, within PFR28_00135 at 158.908 kb on + strand at 158.909 kb on - strand at 158.909 kb on - strand at 158.943 kb on + strand at 158.943 kb on + strand at 158.943 kb on + strand at 158.943 kb on + strand at 158.943 kb on + strand at 158.944 kb on - strand at 158.944 kb on - strand at 158.944 kb on - strand at 158.952 kb on + strand at 158.953 kb on - strand at 158.953 kb on - strand at 158.953 kb on - strand at 158.954 kb on + strand at 158.955 kb on - strand at 158.955 kb on - strand at 158.955 kb on - strand at 158.955 kb on - strand at 158.960 kb on + strand at 158.961 kb on - strand at 158.961 kb on - strand at 158.961 kb on - strand at 159.012 kb on + strand at 159.012 kb on + strand at 159.013 kb on - strand at 159.013 kb on - strand at 159.013 kb on - strand at 159.013 kb on - strand at 159.013 kb on - strand at 159.040 kb on + strand at 159.040 kb on + strand at 159.041 kb on - strand at 159.041 kb on - strand at 159.042 kb on + strand at 159.042 kb on + strand at 159.043 kb on - strand at 159.043 kb on - strand at 159.043 kb on - strand at 159.043 kb on - strand at 159.043 kb on - strand at 159.043 kb on - strand at 159.043 kb on - strand at 159.401 kb on + strand, within PFR28_00136 at 159.401 kb on + strand, within PFR28_00136 at 159.482 kb on + strand, within PFR28_00136
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct remove 157,166 + +1.0 157,169 + +0.2 157,243 + -0.6 157,244 - -1.5 157,386 + -3.9 157,386 + +0.1 157,387 - -0.7 157,387 - -2.2 157,387 - +1.9 157,399 + +0.0 157,399 + -1.1 157,399 + +0.6 157,399 + -0.5 157,399 + +2.4 157,399 + +0.5 157,400 - -1.9 157,400 - -0.1 157,400 - +1.6 157,400 - +1.1 157,400 - +1.2 157,400 - -0.9 157,400 - +0.3 157,400 - +0.0 157,402 + -1.8 157,402 + -1.5 157,403 - -0.7 157,450 + PFR28_00133 0.20 +1.3 157,450 + PFR28_00133 0.20 +0.1 157,450 + PFR28_00133 0.20 +2.4 157,450 + PFR28_00133 0.20 -0.5 157,451 - PFR28_00133 0.21 +0.0 157,451 - PFR28_00133 0.21 -1.6 157,451 - PFR28_00133 0.21 -0.2 157,451 - PFR28_00133 0.21 -0.2 157,451 - PFR28_00133 0.21 +0.4 157,451 - PFR28_00133 0.21 +2.9 157,451 - PFR28_00133 0.21 -0.9 157,451 - PFR28_00133 0.21 -0.2 157,451 - PFR28_00133 0.21 -1.6 157,501 + PFR28_00133 0.38 -1.8 157,501 + PFR28_00133 0.38 -2.4 157,501 + PFR28_00133 0.38 -0.2 157,501 + PFR28_00133 0.38 +0.0 157,501 + PFR28_00133 0.38 -0.1 157,501 + PFR28_00133 0.38 -2.8 157,501 + PFR28_00133 0.38 -0.3 157,501 + PFR28_00133 0.38 -1.7 157,501 + PFR28_00133 0.38 -0.9 157,502 - PFR28_00133 0.39 +1.6 157,502 - PFR28_00133 0.39 +0.0 157,502 - PFR28_00133 0.39 -0.6 157,502 - PFR28_00133 0.39 +4.0 157,502 - PFR28_00133 0.39 -0.9 157,502 - PFR28_00133 0.39 -0.4 157,502 - PFR28_00133 0.39 -0.9 157,502 - PFR28_00133 0.39 +2.0 157,524 + PFR28_00133 0.46 +2.6 157,524 + PFR28_00133 0.46 -0.9 157,524 + PFR28_00133 0.46 +0.7 157,524 + PFR28_00133 0.46 -1.4 157,524 + PFR28_00133 0.46 -0.3 157,524 + PFR28_00133 0.46 +1.8 157,525 - PFR28_00133 0.47 -0.3 157,525 - PFR28_00133 0.47 -1.8 157,525 - PFR28_00133 0.47 +1.0 157,525 - PFR28_00133 0.47 -1.1 157,532 + PFR28_00133 0.49 +1.6 157,532 + PFR28_00133 0.49 -1.3 157,533 - PFR28_00133 0.49 -0.6 157,548 + PFR28_00133 0.55 -0.1 157,548 + PFR28_00133 0.55 +0.4 157,548 + PFR28_00133 0.55 +0.6 157,548 + PFR28_00133 0.55 +3.0 157,548 + PFR28_00133 0.55 -0.1 157,548 + PFR28_00133 0.55 +0.0 157,548 + PFR28_00133 0.55 -3.5 157,548 + PFR28_00133 0.55 -3.5 157,548 + PFR28_00133 0.55 -2.2 157,548 + PFR28_00133 0.55 -0.5 157,548 + PFR28_00133 0.55 +0.1 157,548 + PFR28_00133 0.55 -1.4 157,549 - PFR28_00133 0.55 -0.7 157,549 - PFR28_00133 0.55 +0.8 157,549 - PFR28_00133 0.55 -1.1 157,549 - PFR28_00133 0.55 +0.3 157,549 - PFR28_00133 0.55 +0.7 157,549 - PFR28_00133 0.55 +0.3 157,549 - PFR28_00133 0.55 -1.6 157,549 - PFR28_00133 0.55 -3.1 157,549 - PFR28_00133 0.55 -1.6 157,549 - PFR28_00133 0.55 -1.7 157,555 + PFR28_00133 0.57 -2.5 157,559 + PFR28_00133 0.59 +2.2 157,559 + PFR28_00133 0.59 +1.0 157,559 + PFR28_00133 0.59 -1.7 157,559 + PFR28_00133 0.59 +1.6 157,559 + PFR28_00133 0.59 -0.9 157,560 - PFR28_00133 0.59 -2.0 157,560 - PFR28_00133 0.59 -1.1 157,582 + PFR28_00133 0.67 +0.5 157,583 - PFR28_00133 0.67 -0.4 157,639 + PFR28_00133 0.87 +1.3 157,640 - PFR28_00133 0.87 +0.6 157,640 - PFR28_00133 0.87 +1.0 157,640 - PFR28_00133 0.87 +0.4 157,675 - -2.3 157,694 + PFR28_00134 0.17 +0.4 157,694 + PFR28_00134 0.17 -1.0 157,695 - PFR28_00134 0.17 +0.9 157,695 - PFR28_00134 0.17 +2.9 157,695 - PFR28_00134 0.17 -0.6 157,695 - PFR28_00134 0.17 -0.1 157,726 + PFR28_00134 0.27 -2.0 157,726 + PFR28_00134 0.27 -1.8 157,726 + PFR28_00134 0.27 +1.2 157,726 + PFR28_00134 0.27 +0.9 157,726 + PFR28_00134 0.27 +2.9 157,726 + PFR28_00134 0.27 -0.6 157,727 - PFR28_00134 0.28 -2.0 157,727 - PFR28_00134 0.28 -0.0 157,727 - PFR28_00134 0.28 +0.1 157,727 - PFR28_00134 0.28 -2.3 157,732 + PFR28_00134 0.29 -2.2 157,733 - PFR28_00134 0.29 +1.0 157,733 - PFR28_00134 0.29 -0.9 157,769 + PFR28_00134 0.41 -1.7 157,769 + PFR28_00134 0.41 -3.0 157,769 + PFR28_00134 0.41 -0.3 157,769 + PFR28_00134 0.41 -0.4 157,769 + PFR28_00134 0.41 -2.4 157,770 - PFR28_00134 0.41 -1.1 157,770 - PFR28_00134 0.41 +0.3 157,779 + PFR28_00134 0.44 +0.4 157,845 - PFR28_00134 0.66 -0.3 157,853 - PFR28_00134 0.68 -0.7 157,891 + PFR28_00134 0.81 +1.5 157,891 + PFR28_00134 0.81 +1.9 157,892 - PFR28_00134 0.81 -0.1 157,940 - +0.0 157,948 + +1.2 157,948 + -0.1 157,948 + +0.9 157,949 - +1.8 157,949 - -0.8 157,949 - +0.8 157,949 - +1.8 157,985 + -1.7 157,985 + -0.4 157,986 - -2.7 157,986 - +0.8 157,986 - -1.1 157,986 - +0.3 158,140 + +0.7 158,141 - +1.1 158,560 + PFR28_00135 0.59 -0.4 158,570 - PFR28_00135 0.60 -0.3 158,695 + PFR28_00135 0.78 +1.7 158,695 + PFR28_00135 0.78 +3.0 158,696 - PFR28_00135 0.78 -2.3 158,696 - PFR28_00135 0.78 +1.6 158,764 + PFR28_00135 0.87 -1.6 158,764 + PFR28_00135 0.87 -3.7 158,764 + PFR28_00135 0.87 +0.4 158,764 + PFR28_00135 0.87 -2.4 158,764 + PFR28_00135 0.87 -0.4 158,764 + PFR28_00135 0.87 +0.7 158,764 + PFR28_00135 0.87 +0.0 158,764 + PFR28_00135 0.87 -2.8 158,764 + PFR28_00135 0.87 +0.2 158,764 + PFR28_00135 0.87 -1.3 158,765 - PFR28_00135 0.87 +0.6 158,765 - PFR28_00135 0.87 -1.3 158,765 - PFR28_00135 0.87 -1.3 158,765 - PFR28_00135 0.87 +0.2 158,765 - PFR28_00135 0.87 +0.3 158,908 + -1.9 158,909 - +0.3 158,909 - +0.3 158,943 + -0.4 158,943 + +1.8 158,943 + -1.8 158,943 + +2.0 158,943 + +0.0 158,944 - +2.3 158,944 - -0.0 158,944 - +0.3 158,952 + -2.1 158,953 - +0.8 158,953 - -2.4 158,953 - -0.6 158,954 + -0.5 158,955 - -0.8 158,955 - -1.7 158,955 - +1.4 158,955 - -1.1 158,960 + -1.0 158,961 - +0.9 158,961 - +1.2 158,961 - -0.3 159,012 + -0.7 159,012 + -0.6 159,013 - -0.1 159,013 - +0.6 159,013 - +1.8 159,013 - +0.9 159,013 - -0.7 159,040 + -0.7 159,040 + +0.5 159,041 - +1.5 159,041 - +1.2 159,042 + -2.4 159,042 + -2.7 159,043 - +1.0 159,043 - +1.0 159,043 - -1.0 159,043 - -1.1 159,043 - -0.7 159,043 - +0.0 159,043 - -1.2 159,401 + PFR28_00136 0.25 +1.6 159,401 + PFR28_00136 0.25 +0.6 159,482 + PFR28_00136 0.32 +1.0
Or see this region's nucleotide sequence