Experiment: EV152
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04077 and ECD_04078 overlap by 17 nucleotides ECD_04078 and ECD_04079 are separated by 218 nucleotides ECD_04079 and ECD_04080 are separated by 308 nucleotides
ECD_04077: ECD_04077 - putative transcriptional regulator, at 4,341,132 to 4,341,458
_04077
ECD_04078: ECD_04078 - OapA family protein, at 4,341,442 to 4,342,080
_04078
ECD_04079: ECD_04079 - FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase), at 4,342,299 to 4,342,919
_04079
ECD_04080: ECD_04080 - D-alanine/D-serine/glycine transporter, at 4,343,228 to 4,344,640
_04080
Position (kb)
4342
4343 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4341.316 kb on - strand, within ECD_04077 at 4341.332 kb on + strand, within ECD_04077 at 4341.348 kb on + strand, within ECD_04077 at 4341.359 kb on + strand, within ECD_04077 at 4341.392 kb on + strand, within ECD_04077 at 4341.392 kb on + strand, within ECD_04077 at 4341.392 kb on + strand, within ECD_04077 at 4341.392 kb on + strand, within ECD_04077 at 4341.393 kb on - strand, within ECD_04077 at 4341.443 kb on + strand at 4341.592 kb on - strand, within ECD_04078 at 4341.620 kb on + strand, within ECD_04078 at 4341.620 kb on + strand, within ECD_04078 at 4341.620 kb on + strand, within ECD_04078 at 4341.620 kb on + strand, within ECD_04078 at 4341.620 kb on + strand, within ECD_04078 at 4341.621 kb on - strand, within ECD_04078 at 4341.779 kb on - strand, within ECD_04078 at 4341.780 kb on + strand, within ECD_04078 at 4341.781 kb on - strand, within ECD_04078 at 4341.781 kb on - strand, within ECD_04078 at 4341.886 kb on + strand, within ECD_04078 at 4341.886 kb on + strand, within ECD_04078 at 4341.959 kb on - strand, within ECD_04078 at 4341.960 kb on + strand, within ECD_04078 at 4341.973 kb on - strand, within ECD_04078 at 4342.117 kb on - strand at 4342.122 kb on - strand at 4342.122 kb on - strand at 4342.128 kb on - strand at 4342.133 kb on - strand at 4342.139 kb on - strand at 4342.139 kb on - strand at 4342.169 kb on + strand at 4342.169 kb on + strand at 4342.170 kb on - strand at 4342.189 kb on - strand at 4342.259 kb on - strand at 4342.271 kb on - strand at 4342.276 kb on + strand at 4342.276 kb on + strand at 4342.276 kb on + strand at 4342.276 kb on + strand at 4342.277 kb on - strand at 4342.295 kb on + strand at 4342.557 kb on + strand, within ECD_04079 at 4342.655 kb on + strand, within ECD_04079 at 4342.655 kb on + strand, within ECD_04079 at 4342.656 kb on - strand, within ECD_04079 at 4342.677 kb on + strand, within ECD_04079 at 4342.677 kb on + strand, within ECD_04079 at 4342.677 kb on + strand, within ECD_04079 at 4342.840 kb on - strand, within ECD_04079 at 4343.062 kb on - strand at 4343.062 kb on - strand at 4343.106 kb on + strand at 4343.109 kb on + strand at 4343.129 kb on - strand at 4343.133 kb on - strand at 4343.135 kb on + strand at 4343.135 kb on + strand at 4343.135 kb on + strand at 4343.169 kb on + strand at 4343.169 kb on + strand at 4343.169 kb on + strand at 4343.232 kb on + strand at 4343.232 kb on + strand at 4343.232 kb on + strand at 4343.308 kb on + strand at 4343.308 kb on + strand at 4343.309 kb on - strand at 4343.317 kb on + strand at 4343.318 kb on - strand at 4343.318 kb on - strand at 4343.408 kb on - strand, within ECD_04080 at 4343.422 kb on + strand, within ECD_04080 at 4343.600 kb on + strand, within ECD_04080 at 4343.600 kb on + strand, within ECD_04080 at 4343.600 kb on + strand, within ECD_04080 at 4343.601 kb on - strand, within ECD_04080 at 4343.655 kb on + strand, within ECD_04080 at 4343.656 kb on - strand, within ECD_04080
Per-strain Table
Position Strand Gene LocusTag Fraction EV152 remove 4,341,316 - ECD_04077 0.56 -1.2 4,341,332 + ECD_04077 0.61 -0.7 4,341,348 + ECD_04077 0.66 -0.0 4,341,359 + ECD_04077 0.69 -0.9 4,341,392 + ECD_04077 0.80 -1.4 4,341,392 + ECD_04077 0.80 -0.0 4,341,392 + ECD_04077 0.80 -0.9 4,341,392 + ECD_04077 0.80 +0.0 4,341,393 - ECD_04077 0.80 +0.8 4,341,443 + +0.8 4,341,592 - ECD_04078 0.23 +0.5 4,341,620 + ECD_04078 0.28 -0.4 4,341,620 + ECD_04078 0.28 -0.5 4,341,620 + ECD_04078 0.28 -0.7 4,341,620 + ECD_04078 0.28 -0.1 4,341,620 + ECD_04078 0.28 +1.1 4,341,621 - ECD_04078 0.28 -0.2 4,341,779 - ECD_04078 0.53 -0.0 4,341,780 + ECD_04078 0.53 +0.2 4,341,781 - ECD_04078 0.53 -0.0 4,341,781 - ECD_04078 0.53 -0.5 4,341,886 + ECD_04078 0.69 -0.1 4,341,886 + ECD_04078 0.69 -1.9 4,341,959 - ECD_04078 0.81 -2.2 4,341,960 + ECD_04078 0.81 -0.2 4,341,973 - ECD_04078 0.83 +0.3 4,342,117 - -1.0 4,342,122 - -0.2 4,342,122 - -0.7 4,342,128 - -0.7 4,342,133 - -1.1 4,342,139 - +1.3 4,342,139 - -0.0 4,342,169 + +0.3 4,342,169 + +0.6 4,342,170 - -0.1 4,342,189 - -0.8 4,342,259 - +1.6 4,342,271 - +0.9 4,342,276 + +1.6 4,342,276 + -0.5 4,342,276 + +0.4 4,342,276 + +0.0 4,342,277 - +0.9 4,342,295 + +1.5 4,342,557 + ECD_04079 0.42 -0.2 4,342,655 + ECD_04079 0.57 +0.6 4,342,655 + ECD_04079 0.57 -0.2 4,342,656 - ECD_04079 0.57 +0.4 4,342,677 + ECD_04079 0.61 +0.7 4,342,677 + ECD_04079 0.61 +1.1 4,342,677 + ECD_04079 0.61 +0.6 4,342,840 - ECD_04079 0.87 +0.6 4,343,062 - -0.7 4,343,062 - +0.4 4,343,106 + -0.1 4,343,109 + -0.3 4,343,129 - +0.0 4,343,133 - -0.1 4,343,135 + +1.0 4,343,135 + +0.5 4,343,135 + -0.4 4,343,169 + +0.4 4,343,169 + +0.4 4,343,169 + -0.2 4,343,232 + +0.9 4,343,232 + -0.1 4,343,232 + +0.6 4,343,308 + +0.0 4,343,308 + +0.0 4,343,309 - +0.8 4,343,317 + +0.2 4,343,318 - +1.9 4,343,318 - +0.2 4,343,408 - ECD_04080 0.13 +0.4 4,343,422 + ECD_04080 0.14 -0.2 4,343,600 + ECD_04080 0.26 -0.6 4,343,600 + ECD_04080 0.26 -1.0 4,343,600 + ECD_04080 0.26 -0.6 4,343,601 - ECD_04080 0.26 +0.2 4,343,655 + ECD_04080 0.30 -0.2 4,343,656 - ECD_04080 0.30 +0.1
Or see this region's nucleotide sequence