Strain Fitness in Escherichia coli BL21 around ECD_04023

Experiment: EV152

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04022 and ECD_04023 are separated by 62 nucleotidesECD_04023 and ECD_04024 are separated by 10 nucleotidesECD_04024 and ECD_04025 are separated by 10 nucleotides ECD_04022: ECD_04022 - penicillin-binding protein; beta-lactamase, intrinsically weak, at 4,284,887 to 4,286,020 _04022 ECD_04023: ECD_04023 - fumarate reductase (anaerobic), membrane anchor subunit, at 4,286,083 to 4,286,442 _04023 ECD_04024: ECD_04024 - fumarate reductase (anaerobic), membrane anchor subunit, at 4,286,453 to 4,286,848 _04024 ECD_04025: ECD_04025 - fumarate reductase (anaerobic), Fe-S subunit, at 4,286,859 to 4,287,593 _04025 Position (kb) 4286 4287Strain fitness (log2 ratio) -2 -1 0 1at 4285.176 kb on + strand, within ECD_04022at 4285.177 kb on - strand, within ECD_04022at 4285.177 kb on - strand, within ECD_04022at 4285.177 kb on - strand, within ECD_04022at 4285.180 kb on + strand, within ECD_04022at 4285.246 kb on + strand, within ECD_04022at 4285.312 kb on - strand, within ECD_04022at 4285.312 kb on - strand, within ECD_04022at 4285.325 kb on + strand, within ECD_04022at 4285.325 kb on + strand, within ECD_04022at 4285.325 kb on + strand, within ECD_04022at 4285.326 kb on - strand, within ECD_04022at 4285.378 kb on - strand, within ECD_04022at 4285.405 kb on + strand, within ECD_04022at 4285.406 kb on - strand, within ECD_04022at 4285.406 kb on - strand, within ECD_04022at 4285.406 kb on - strand, within ECD_04022at 4285.414 kb on + strand, within ECD_04022at 4285.414 kb on + strand, within ECD_04022at 4285.415 kb on - strand, within ECD_04022at 4285.415 kb on - strand, within ECD_04022at 4285.638 kb on + strand, within ECD_04022at 4285.638 kb on + strand, within ECD_04022at 4285.639 kb on - strand, within ECD_04022at 4285.652 kb on + strand, within ECD_04022at 4285.652 kb on + strand, within ECD_04022at 4285.652 kb on + strand, within ECD_04022at 4285.652 kb on + strand, within ECD_04022at 4285.652 kb on + strand, within ECD_04022at 4285.652 kb on + strand, within ECD_04022at 4285.652 kb on + strand, within ECD_04022at 4285.653 kb on - strand, within ECD_04022at 4285.653 kb on - strand, within ECD_04022at 4285.653 kb on - strand, within ECD_04022at 4285.653 kb on - strand, within ECD_04022at 4285.653 kb on - strand, within ECD_04022at 4285.653 kb on - strand, within ECD_04022at 4285.653 kb on - strand, within ECD_04022at 4285.653 kb on - strand, within ECD_04022at 4285.655 kb on + strand, within ECD_04022at 4285.655 kb on + strand, within ECD_04022at 4285.656 kb on - strand, within ECD_04022at 4285.699 kb on - strand, within ECD_04022at 4285.788 kb on - strand, within ECD_04022at 4285.854 kb on + strand, within ECD_04022at 4285.855 kb on - strand, within ECD_04022at 4285.858 kb on - strand, within ECD_04022at 4285.858 kb on - strand, within ECD_04022at 4285.865 kb on - strand, within ECD_04022at 4285.913 kb on + strandat 4285.913 kb on + strandat 4285.913 kb on + strandat 4285.914 kb on - strandat 4285.914 kb on - strandat 4285.915 kb on + strandat 4285.916 kb on - strandat 4285.924 kb on + strandat 4285.924 kb on + strandat 4285.943 kb on - strandat 4285.991 kb on + strandat 4285.991 kb on + strandat 4285.992 kb on - strandat 4286.020 kb on + strandat 4286.021 kb on - strandat 4286.084 kb on + strandat 4286.091 kb on + strandat 4286.091 kb on + strandat 4286.091 kb on + strandat 4286.092 kb on - strandat 4286.161 kb on + strand, within ECD_04023at 4286.161 kb on + strand, within ECD_04023at 4286.162 kb on - strand, within ECD_04023at 4286.162 kb on - strand, within ECD_04023at 4286.162 kb on - strand, within ECD_04023at 4286.196 kb on + strand, within ECD_04023at 4286.197 kb on - strand, within ECD_04023at 4286.246 kb on - strand, within ECD_04023at 4286.288 kb on + strand, within ECD_04023at 4286.288 kb on + strand, within ECD_04023at 4286.288 kb on + strand, within ECD_04023at 4286.289 kb on - strand, within ECD_04023at 4286.376 kb on + strand, within ECD_04023at 4286.376 kb on + strand, within ECD_04023at 4286.460 kb on + strandat 4286.461 kb on - strandat 4286.480 kb on + strandat 4286.773 kb on - strand, within ECD_04024at 4286.826 kb on + strandat 4286.826 kb on + strandat 4286.826 kb on + strandat 4286.826 kb on + strandat 4286.827 kb on - strandat 4286.904 kb on + strandat 4286.965 kb on + strand, within ECD_04025at 4286.978 kb on + strand, within ECD_04025at 4286.979 kb on - strand, within ECD_04025at 4286.989 kb on - strand, within ECD_04025at 4287.018 kb on - strand, within ECD_04025at 4287.029 kb on + strand, within ECD_04025at 4287.056 kb on - strand, within ECD_04025at 4287.056 kb on - strand, within ECD_04025at 4287.166 kb on + strand, within ECD_04025at 4287.167 kb on - strand, within ECD_04025at 4287.197 kb on + strand, within ECD_04025at 4287.198 kb on - strand, within ECD_04025at 4287.235 kb on + strand, within ECD_04025at 4287.235 kb on + strand, within ECD_04025at 4287.235 kb on + strand, within ECD_04025at 4287.236 kb on - strand, within ECD_04025at 4287.236 kb on - strand, within ECD_04025at 4287.276 kb on - strand, within ECD_04025at 4287.276 kb on - strand, within ECD_04025at 4287.308 kb on + strand, within ECD_04025at 4287.313 kb on - strand, within ECD_04025at 4287.329 kb on + strand, within ECD_04025at 4287.329 kb on + strand, within ECD_04025at 4287.359 kb on + strand, within ECD_04025at 4287.359 kb on + strand, within ECD_04025at 4287.417 kb on - strand, within ECD_04025

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Per-strain Table

Position Strand Gene LocusTag Fraction EV152
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4,285,176 + ECD_04022 0.25 -0.2
4,285,177 - ECD_04022 0.26 +0.3
4,285,177 - ECD_04022 0.26 +0.4
4,285,177 - ECD_04022 0.26 -0.7
4,285,180 + ECD_04022 0.26 +0.2
4,285,246 + ECD_04022 0.32 +0.0
4,285,312 - ECD_04022 0.37 -0.1
4,285,312 - ECD_04022 0.37 -0.2
4,285,325 + ECD_04022 0.39 +0.5
4,285,325 + ECD_04022 0.39 -0.4
4,285,325 + ECD_04022 0.39 +0.3
4,285,326 - ECD_04022 0.39 -1.0
4,285,378 - ECD_04022 0.43 -1.0
4,285,405 + ECD_04022 0.46 -0.2
4,285,406 - ECD_04022 0.46 +0.1
4,285,406 - ECD_04022 0.46 -0.0
4,285,406 - ECD_04022 0.46 -0.7
4,285,414 + ECD_04022 0.46 -0.8
4,285,414 + ECD_04022 0.46 +0.6
4,285,415 - ECD_04022 0.47 -0.0
4,285,415 - ECD_04022 0.47 +0.1
4,285,638 + ECD_04022 0.66 -0.1
4,285,638 + ECD_04022 0.66 -1.3
4,285,639 - ECD_04022 0.66 -1.4
4,285,652 + ECD_04022 0.67 +1.2
4,285,652 + ECD_04022 0.67 -0.1
4,285,652 + ECD_04022 0.67 -1.5
4,285,652 + ECD_04022 0.67 +1.2
4,285,652 + ECD_04022 0.67 +0.4
4,285,652 + ECD_04022 0.67 +1.0
4,285,652 + ECD_04022 0.67 -1.1
4,285,653 - ECD_04022 0.68 -0.0
4,285,653 - ECD_04022 0.68 +0.1
4,285,653 - ECD_04022 0.68 -0.4
4,285,653 - ECD_04022 0.68 -0.3
4,285,653 - ECD_04022 0.68 +0.3
4,285,653 - ECD_04022 0.68 -0.3
4,285,653 - ECD_04022 0.68 -0.7
4,285,653 - ECD_04022 0.68 +0.5
4,285,655 + ECD_04022 0.68 +0.2
4,285,655 + ECD_04022 0.68 +0.9
4,285,656 - ECD_04022 0.68 -0.0
4,285,699 - ECD_04022 0.72 -0.6
4,285,788 - ECD_04022 0.79 -0.3
4,285,854 + ECD_04022 0.85 -0.3
4,285,855 - ECD_04022 0.85 -0.1
4,285,858 - ECD_04022 0.86 -2.7
4,285,858 - ECD_04022 0.86 +0.3
4,285,865 - ECD_04022 0.86 -0.3
4,285,913 + -0.2
4,285,913 + -0.7
4,285,913 + -2.2
4,285,914 - +0.6
4,285,914 - -1.0
4,285,915 + -0.4
4,285,916 - +0.9
4,285,924 + +1.5
4,285,924 + +0.5
4,285,943 - +0.6
4,285,991 + -2.4
4,285,991 + -0.8
4,285,992 - -0.2
4,286,020 + -0.2
4,286,021 - -0.3
4,286,084 + +1.2
4,286,091 + +1.3
4,286,091 + -1.6
4,286,091 + +1.0
4,286,092 - -0.2
4,286,161 + ECD_04023 0.22 -0.6
4,286,161 + ECD_04023 0.22 +1.3
4,286,162 - ECD_04023 0.22 -1.2
4,286,162 - ECD_04023 0.22 -0.3
4,286,162 - ECD_04023 0.22 -0.2
4,286,196 + ECD_04023 0.31 +0.7
4,286,197 - ECD_04023 0.32 +0.9
4,286,246 - ECD_04023 0.45 -1.5
4,286,288 + ECD_04023 0.57 +0.0
4,286,288 + ECD_04023 0.57 -0.7
4,286,288 + ECD_04023 0.57 -0.5
4,286,289 - ECD_04023 0.57 +1.5
4,286,376 + ECD_04023 0.81 +0.0
4,286,376 + ECD_04023 0.81 +0.3
4,286,460 + -0.5
4,286,461 - +0.3
4,286,480 + +0.2
4,286,773 - ECD_04024 0.81 -0.8
4,286,826 + -0.6
4,286,826 + +1.0
4,286,826 + +0.2
4,286,826 + -0.3
4,286,827 - -1.2
4,286,904 + -0.4
4,286,965 + ECD_04025 0.14 +0.4
4,286,978 + ECD_04025 0.16 +0.6
4,286,979 - ECD_04025 0.16 +0.2
4,286,989 - ECD_04025 0.18 -1.5
4,287,018 - ECD_04025 0.22 -0.9
4,287,029 + ECD_04025 0.23 +0.5
4,287,056 - ECD_04025 0.27 +0.7
4,287,056 - ECD_04025 0.27 -0.3
4,287,166 + ECD_04025 0.42 +0.2
4,287,167 - ECD_04025 0.42 +0.1
4,287,197 + ECD_04025 0.46 +0.2
4,287,198 - ECD_04025 0.46 -0.3
4,287,235 + ECD_04025 0.51 +0.1
4,287,235 + ECD_04025 0.51 -0.3
4,287,235 + ECD_04025 0.51 +0.4
4,287,236 - ECD_04025 0.51 -0.0
4,287,236 - ECD_04025 0.51 -0.1
4,287,276 - ECD_04025 0.57 -0.7
4,287,276 - ECD_04025 0.57 +0.2
4,287,308 + ECD_04025 0.61 +0.5
4,287,313 - ECD_04025 0.62 +0.5
4,287,329 + ECD_04025 0.64 +1.1
4,287,329 + ECD_04025 0.64 +1.3
4,287,359 + ECD_04025 0.68 +0.2
4,287,359 + ECD_04025 0.68 -0.0
4,287,417 - ECD_04025 0.76 +0.1

Or see this region's nucleotide sequence