Strain Fitness in Escherichia coli BL21 around ECD_03396

Experiment: EV152

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_t00062 and ECD_03396 are separated by 91 nucleotidesECD_03396 and ECD_03397 are separated by 323 nucleotides ECD_t00062: ECD_t00062 - tRNA-Pro, at 3,570,770 to 3,570,846 _t00062 ECD_03396: ECD_03396 - KDO phosphoethanolamine transferase, Ca(2+)-inducible, at 3,570,938 to 3,572,629 _03396 ECD_03397: ECD_03397 - pyruvate-inducible inner membrane protein, putative transporter, at 3,572,953 to 3,574,161 _03397 Position (kb) 3570 3571 3572 3573Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3569.955 kb on + strandat 3569.955 kb on + strandat 3569.956 kb on - strandat 3569.956 kb on - strandat 3569.956 kb on - strandat 3569.977 kb on - strandat 3569.980 kb on + strandat 3569.991 kb on + strandat 3570.011 kb on - strandat 3570.029 kb on + strandat 3570.029 kb on + strandat 3570.030 kb on - strandat 3570.061 kb on + strandat 3570.061 kb on + strandat 3570.079 kb on - strandat 3570.154 kb on - strandat 3570.249 kb on + strandat 3570.261 kb on + strandat 3570.311 kb on - strandat 3570.332 kb on - strandat 3570.500 kb on + strandat 3570.500 kb on + strandat 3570.501 kb on - strandat 3570.509 kb on + strandat 3570.613 kb on - strandat 3570.864 kb on - strandat 3570.893 kb on + strandat 3570.940 kb on - strandat 3571.016 kb on - strandat 3571.016 kb on - strandat 3571.017 kb on + strandat 3571.018 kb on - strandat 3571.040 kb on - strandat 3571.044 kb on + strandat 3571.045 kb on - strandat 3571.045 kb on - strandat 3571.045 kb on - strandat 3571.045 kb on - strandat 3571.045 kb on - strandat 3571.131 kb on + strand, within ECD_03396at 3571.131 kb on + strand, within ECD_03396at 3571.135 kb on + strand, within ECD_03396at 3571.136 kb on - strand, within ECD_03396at 3571.222 kb on + strand, within ECD_03396at 3571.223 kb on - strand, within ECD_03396at 3571.249 kb on - strand, within ECD_03396at 3571.249 kb on - strand, within ECD_03396at 3571.249 kb on - strand, within ECD_03396at 3571.249 kb on - strand, within ECD_03396at 3571.249 kb on - strand, within ECD_03396at 3571.297 kb on + strand, within ECD_03396at 3571.298 kb on - strand, within ECD_03396at 3571.311 kb on + strand, within ECD_03396at 3571.311 kb on + strand, within ECD_03396at 3571.312 kb on - strand, within ECD_03396at 3571.329 kb on + strand, within ECD_03396at 3571.329 kb on + strand, within ECD_03396at 3571.330 kb on - strand, within ECD_03396at 3571.364 kb on - strand, within ECD_03396at 3571.375 kb on + strand, within ECD_03396at 3571.375 kb on + strand, within ECD_03396at 3571.375 kb on + strand, within ECD_03396at 3571.376 kb on - strand, within ECD_03396at 3571.376 kb on - strand, within ECD_03396at 3571.376 kb on - strand, within ECD_03396at 3571.376 kb on - strand, within ECD_03396at 3571.422 kb on + strand, within ECD_03396at 3571.422 kb on + strand, within ECD_03396at 3571.423 kb on - strand, within ECD_03396at 3571.427 kb on - strand, within ECD_03396at 3571.465 kb on + strand, within ECD_03396at 3571.466 kb on - strand, within ECD_03396at 3571.506 kb on - strand, within ECD_03396at 3571.516 kb on + strand, within ECD_03396at 3571.516 kb on + strand, within ECD_03396at 3571.516 kb on + strand, within ECD_03396at 3571.516 kb on + strand, within ECD_03396at 3571.516 kb on + strand, within ECD_03396at 3571.517 kb on - strand, within ECD_03396at 3571.517 kb on - strand, within ECD_03396at 3571.517 kb on - strand, within ECD_03396at 3571.517 kb on - strand, within ECD_03396at 3571.517 kb on - strand, within ECD_03396at 3571.517 kb on - strand, within ECD_03396at 3571.524 kb on - strand, within ECD_03396at 3571.540 kb on + strand, within ECD_03396at 3571.541 kb on - strand, within ECD_03396at 3571.599 kb on + strand, within ECD_03396at 3571.600 kb on - strand, within ECD_03396at 3571.622 kb on - strand, within ECD_03396at 3571.627 kb on - strand, within ECD_03396at 3571.699 kb on + strand, within ECD_03396at 3571.699 kb on + strand, within ECD_03396at 3571.700 kb on - strand, within ECD_03396at 3571.721 kb on + strand, within ECD_03396at 3571.721 kb on + strand, within ECD_03396at 3571.722 kb on - strand, within ECD_03396at 3571.722 kb on - strand, within ECD_03396at 3571.722 kb on - strand, within ECD_03396at 3571.767 kb on + strand, within ECD_03396at 3571.819 kb on + strand, within ECD_03396at 3571.837 kb on + strand, within ECD_03396at 3571.843 kb on + strand, within ECD_03396at 3571.844 kb on - strand, within ECD_03396at 3571.844 kb on - strand, within ECD_03396at 3571.873 kb on + strand, within ECD_03396at 3571.873 kb on + strand, within ECD_03396at 3571.884 kb on + strand, within ECD_03396at 3571.884 kb on + strand, within ECD_03396at 3571.884 kb on + strand, within ECD_03396at 3571.885 kb on - strand, within ECD_03396at 3571.885 kb on - strand, within ECD_03396at 3571.885 kb on - strand, within ECD_03396at 3571.885 kb on - strand, within ECD_03396at 3571.885 kb on - strand, within ECD_03396at 3571.983 kb on + strand, within ECD_03396at 3571.983 kb on + strand, within ECD_03396at 3572.020 kb on - strand, within ECD_03396at 3572.043 kb on + strand, within ECD_03396at 3572.043 kb on + strand, within ECD_03396at 3572.044 kb on - strand, within ECD_03396at 3572.122 kb on + strand, within ECD_03396at 3572.125 kb on + strand, within ECD_03396at 3572.135 kb on + strand, within ECD_03396at 3572.196 kb on + strand, within ECD_03396at 3572.197 kb on - strand, within ECD_03396at 3572.218 kb on + strand, within ECD_03396at 3572.225 kb on - strand, within ECD_03396at 3572.225 kb on - strand, within ECD_03396at 3572.260 kb on + strand, within ECD_03396at 3572.260 kb on + strand, within ECD_03396at 3572.345 kb on - strand, within ECD_03396at 3572.358 kb on + strand, within ECD_03396at 3572.358 kb on + strand, within ECD_03396at 3572.358 kb on + strand, within ECD_03396at 3572.358 kb on + strand, within ECD_03396at 3572.359 kb on - strand, within ECD_03396at 3572.359 kb on - strand, within ECD_03396at 3572.359 kb on - strand, within ECD_03396at 3572.359 kb on - strand, within ECD_03396at 3572.361 kb on + strand, within ECD_03396at 3572.361 kb on + strand, within ECD_03396at 3572.361 kb on + strand, within ECD_03396at 3572.463 kb on - strandat 3572.523 kb on + strandat 3572.523 kb on + strandat 3572.523 kb on + strandat 3572.523 kb on + strandat 3572.523 kb on + strandat 3572.523 kb on + strandat 3572.524 kb on - strandat 3572.524 kb on - strandat 3572.524 kb on - strandat 3572.524 kb on - strandat 3572.574 kb on + strandat 3572.575 kb on - strandat 3572.575 kb on - strandat 3572.608 kb on + strandat 3572.622 kb on + strandat 3572.657 kb on + strandat 3572.670 kb on - strandat 3572.717 kb on - strandat 3572.717 kb on - strandat 3572.739 kb on + strandat 3572.827 kb on + strandat 3572.859 kb on + strandat 3572.859 kb on + strandat 3572.859 kb on + strandat 3572.860 kb on - strandat 3572.891 kb on + strandat 3572.892 kb on - strandat 3572.936 kb on + strandat 3572.937 kb on - strandat 3573.050 kb on + strandat 3573.051 kb on - strandat 3573.062 kb on + strandat 3573.062 kb on + strandat 3573.062 kb on + strandat 3573.062 kb on + strandat 3573.063 kb on - strandat 3573.063 kb on - strandat 3573.063 kb on - strandat 3573.063 kb on - strandat 3573.138 kb on - strand, within ECD_03397at 3573.153 kb on + strand, within ECD_03397at 3573.153 kb on + strand, within ECD_03397at 3573.153 kb on + strand, within ECD_03397at 3573.154 kb on - strand, within ECD_03397at 3573.198 kb on + strand, within ECD_03397at 3573.198 kb on + strand, within ECD_03397at 3573.198 kb on + strand, within ECD_03397at 3573.198 kb on + strand, within ECD_03397at 3573.198 kb on + strand, within ECD_03397at 3573.199 kb on - strand, within ECD_03397at 3573.213 kb on + strand, within ECD_03397at 3573.315 kb on + strand, within ECD_03397at 3573.316 kb on - strand, within ECD_03397at 3573.388 kb on - strand, within ECD_03397at 3573.388 kb on - strand, within ECD_03397at 3573.388 kb on - strand, within ECD_03397at 3573.467 kb on + strand, within ECD_03397at 3573.467 kb on + strand, within ECD_03397at 3573.467 kb on + strand, within ECD_03397at 3573.468 kb on - strand, within ECD_03397at 3573.548 kb on + strand, within ECD_03397

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Per-strain Table

Position Strand Gene LocusTag Fraction EV152
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3,569,955 + -0.3
3,569,955 + -0.2
3,569,956 - +0.7
3,569,956 - -0.6
3,569,956 - -0.3
3,569,977 - -1.9
3,569,980 + -0.7
3,569,991 + -1.3
3,570,011 - -0.4
3,570,029 + -0.2
3,570,029 + +0.9
3,570,030 - -0.8
3,570,061 + -1.0
3,570,061 + -0.2
3,570,079 - +0.5
3,570,154 - +0.4
3,570,249 + -0.3
3,570,261 + +0.5
3,570,311 - +0.3
3,570,332 - +0.6
3,570,500 + -1.1
3,570,500 + +0.1
3,570,501 - +1.1
3,570,509 + -0.0
3,570,613 - +0.2
3,570,864 - +1.1
3,570,893 + -0.3
3,570,940 - -1.1
3,571,016 - +3.2
3,571,016 - +3.3
3,571,017 + +3.8
3,571,018 - +2.9
3,571,040 - +3.1
3,571,044 + +3.0
3,571,045 - +2.8
3,571,045 - +2.2
3,571,045 - +2.6
3,571,045 - +3.3
3,571,045 - +3.2
3,571,131 + ECD_03396 0.11 +3.3
3,571,131 + ECD_03396 0.11 +2.8
3,571,135 + ECD_03396 0.12 +3.1
3,571,136 - ECD_03396 0.12 +3.2
3,571,222 + ECD_03396 0.17 +3.0
3,571,223 - ECD_03396 0.17 +2.9
3,571,249 - ECD_03396 0.18 +2.4
3,571,249 - ECD_03396 0.18 +2.0
3,571,249 - ECD_03396 0.18 +3.6
3,571,249 - ECD_03396 0.18 +2.0
3,571,249 - ECD_03396 0.18 +3.1
3,571,297 + ECD_03396 0.21 +2.9
3,571,298 - ECD_03396 0.21 +2.9
3,571,311 + ECD_03396 0.22 +3.1
3,571,311 + ECD_03396 0.22 +2.5
3,571,312 - ECD_03396 0.22 +3.3
3,571,329 + ECD_03396 0.23 +2.7
3,571,329 + ECD_03396 0.23 +3.5
3,571,330 - ECD_03396 0.23 +2.7
3,571,364 - ECD_03396 0.25 +2.9
3,571,375 + ECD_03396 0.26 +2.9
3,571,375 + ECD_03396 0.26 +2.9
3,571,375 + ECD_03396 0.26 +4.3
3,571,376 - ECD_03396 0.26 +2.7
3,571,376 - ECD_03396 0.26 +2.3
3,571,376 - ECD_03396 0.26 +3.8
3,571,376 - ECD_03396 0.26 +2.8
3,571,422 + ECD_03396 0.29 +2.8
3,571,422 + ECD_03396 0.29 +2.5
3,571,423 - ECD_03396 0.29 +3.3
3,571,427 - ECD_03396 0.29 +4.5
3,571,465 + ECD_03396 0.31 +2.2
3,571,466 - ECD_03396 0.31 +2.4
3,571,506 - ECD_03396 0.34 +3.2
3,571,516 + ECD_03396 0.34 +3.3
3,571,516 + ECD_03396 0.34 +3.3
3,571,516 + ECD_03396 0.34 +3.3
3,571,516 + ECD_03396 0.34 +3.0
3,571,516 + ECD_03396 0.34 +3.6
3,571,517 - ECD_03396 0.34 +1.8
3,571,517 - ECD_03396 0.34 +3.3
3,571,517 - ECD_03396 0.34 +3.2
3,571,517 - ECD_03396 0.34 +3.4
3,571,517 - ECD_03396 0.34 +3.0
3,571,517 - ECD_03396 0.34 +3.8
3,571,524 - ECD_03396 0.35 +3.0
3,571,540 + ECD_03396 0.36 +2.4
3,571,541 - ECD_03396 0.36 +3.6
3,571,599 + ECD_03396 0.39 +3.0
3,571,600 - ECD_03396 0.39 +2.7
3,571,622 - ECD_03396 0.40 +2.8
3,571,627 - ECD_03396 0.41 +3.0
3,571,699 + ECD_03396 0.45 +3.4
3,571,699 + ECD_03396 0.45 +3.2
3,571,700 - ECD_03396 0.45 +3.4
3,571,721 + ECD_03396 0.46 +3.3
3,571,721 + ECD_03396 0.46 +2.6
3,571,722 - ECD_03396 0.46 +3.0
3,571,722 - ECD_03396 0.46 +3.2
3,571,722 - ECD_03396 0.46 +3.2
3,571,767 + ECD_03396 0.49 +3.1
3,571,819 + ECD_03396 0.52 +3.1
3,571,837 + ECD_03396 0.53 +2.9
3,571,843 + ECD_03396 0.53 +2.7
3,571,844 - ECD_03396 0.54 +3.5
3,571,844 - ECD_03396 0.54 +2.7
3,571,873 + ECD_03396 0.55 +2.6
3,571,873 + ECD_03396 0.55 +3.1
3,571,884 + ECD_03396 0.56 +3.0
3,571,884 + ECD_03396 0.56 +3.2
3,571,884 + ECD_03396 0.56 +3.1
3,571,885 - ECD_03396 0.56 +3.4
3,571,885 - ECD_03396 0.56 +2.7
3,571,885 - ECD_03396 0.56 +3.1
3,571,885 - ECD_03396 0.56 +3.0
3,571,885 - ECD_03396 0.56 +3.7
3,571,983 + ECD_03396 0.62 +3.2
3,571,983 + ECD_03396 0.62 +2.8
3,572,020 - ECD_03396 0.64 +3.0
3,572,043 + ECD_03396 0.65 +4.1
3,572,043 + ECD_03396 0.65 +3.2
3,572,044 - ECD_03396 0.65 +3.1
3,572,122 + ECD_03396 0.70 +3.9
3,572,125 + ECD_03396 0.70 +3.0
3,572,135 + ECD_03396 0.71 +1.6
3,572,196 + ECD_03396 0.74 +3.2
3,572,197 - ECD_03396 0.74 +3.3
3,572,218 + ECD_03396 0.76 +3.2
3,572,225 - ECD_03396 0.76 +3.1
3,572,225 - ECD_03396 0.76 +3.0
3,572,260 + ECD_03396 0.78 +3.1
3,572,260 + ECD_03396 0.78 +3.0
3,572,345 - ECD_03396 0.83 +2.6
3,572,358 + ECD_03396 0.84 +3.0
3,572,358 + ECD_03396 0.84 +3.7
3,572,358 + ECD_03396 0.84 +2.8
3,572,358 + ECD_03396 0.84 +2.7
3,572,359 - ECD_03396 0.84 +2.8
3,572,359 - ECD_03396 0.84 +3.4
3,572,359 - ECD_03396 0.84 +1.8
3,572,359 - ECD_03396 0.84 +2.5
3,572,361 + ECD_03396 0.84 +3.4
3,572,361 + ECD_03396 0.84 +3.0
3,572,361 + ECD_03396 0.84 +0.4
3,572,463 - +2.9
3,572,523 + +3.4
3,572,523 + +2.7
3,572,523 + +3.4
3,572,523 + +2.8
3,572,523 + +3.2
3,572,523 + +3.0
3,572,524 - +3.6
3,572,524 - +3.0
3,572,524 - +3.0
3,572,524 - +2.6
3,572,574 + +3.2
3,572,575 - +3.3
3,572,575 - +2.9
3,572,608 + +2.5
3,572,622 + +3.8
3,572,657 + +3.1
3,572,670 - +2.5
3,572,717 - +0.0
3,572,717 - -0.3
3,572,739 + +3.4
3,572,827 + +0.1
3,572,859 + +0.6
3,572,859 + -1.0
3,572,859 + +0.3
3,572,860 - -0.2
3,572,891 + +0.0
3,572,892 - +0.4
3,572,936 + +0.1
3,572,937 - -0.3
3,573,050 + -0.0
3,573,051 - +1.2
3,573,062 + +0.0
3,573,062 + +1.5
3,573,062 + -0.8
3,573,062 + -0.1
3,573,063 - -0.2
3,573,063 - +1.3
3,573,063 - -0.6
3,573,063 - +1.9
3,573,138 - ECD_03397 0.15 -0.3
3,573,153 + ECD_03397 0.17 +0.6
3,573,153 + ECD_03397 0.17 -1.4
3,573,153 + ECD_03397 0.17 -2.5
3,573,154 - ECD_03397 0.17 +2.2
3,573,198 + ECD_03397 0.20 -1.2
3,573,198 + ECD_03397 0.20 -0.4
3,573,198 + ECD_03397 0.20 +1.5
3,573,198 + ECD_03397 0.20 +0.8
3,573,198 + ECD_03397 0.20 -0.2
3,573,199 - ECD_03397 0.20 +0.7
3,573,213 + ECD_03397 0.22 -0.2
3,573,315 + ECD_03397 0.30 +0.3
3,573,316 - ECD_03397 0.30 -2.2
3,573,388 - ECD_03397 0.36 -0.1
3,573,388 - ECD_03397 0.36 -1.6
3,573,388 - ECD_03397 0.36 -0.2
3,573,467 + ECD_03397 0.43 +0.2
3,573,467 + ECD_03397 0.43 +0.0
3,573,467 + ECD_03397 0.43 -0.5
3,573,468 - ECD_03397 0.43 -0.2
3,573,548 + ECD_03397 0.49 -0.5

Or see this region's nucleotide sequence