Experiment: EV152
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02439 and ECD_02440 are separated by 22 nucleotides ECD_02440 and ECD_02441 are separated by 96 nucleotides
ECD_02439: ECD_02439 - putative sugar ABC transporter ATPase, at 2,542,655 to 2,544,166
_02439
ECD_02440: ECD_02440 - putative sugar ABC transporter periplasmic binding protein, at 2,544,189 to 2,545,172
_02440
ECD_02441: ECD_02441 - DUF4380 domain-containing TPR repeat protein, at 2,545,269 to 2,548,550
_02441
Position (kb)
2544
2545
2546 Strain fitness (log2 ratio)
-2
-1
0
1 at 2543.226 kb on + strand, within ECD_02439 at 2543.313 kb on - strand, within ECD_02439 at 2543.318 kb on - strand, within ECD_02439 at 2543.326 kb on + strand, within ECD_02439 at 2543.345 kb on - strand, within ECD_02439 at 2543.411 kb on - strand, within ECD_02439 at 2543.446 kb on + strand, within ECD_02439 at 2543.447 kb on - strand, within ECD_02439 at 2543.556 kb on + strand, within ECD_02439 at 2543.638 kb on + strand, within ECD_02439 at 2543.639 kb on - strand, within ECD_02439 at 2543.876 kb on + strand, within ECD_02439 at 2543.877 kb on - strand, within ECD_02439 at 2543.929 kb on + strand, within ECD_02439 at 2544.116 kb on - strand at 2544.166 kb on + strand at 2544.245 kb on + strand at 2544.785 kb on - strand, within ECD_02440 at 2544.785 kb on - strand, within ECD_02440 at 2544.785 kb on - strand, within ECD_02440 at 2544.820 kb on + strand, within ECD_02440 at 2544.982 kb on - strand, within ECD_02440 at 2545.064 kb on - strand, within ECD_02440 at 2545.137 kb on + strand at 2545.252 kb on - strand at 2545.453 kb on + strand at 2545.454 kb on - strand at 2545.631 kb on - strand, within ECD_02441 at 2545.634 kb on - strand, within ECD_02441 at 2546.003 kb on + strand, within ECD_02441 at 2546.004 kb on - strand, within ECD_02441 at 2546.077 kb on - strand, within ECD_02441 at 2546.081 kb on + strand, within ECD_02441 at 2546.082 kb on - strand, within ECD_02441
Per-strain Table
Position Strand Gene LocusTag Fraction EV152 remove 2,543,226 + ECD_02439 0.38 -0.3 2,543,313 - ECD_02439 0.44 +0.7 2,543,318 - ECD_02439 0.44 +0.1 2,543,326 + ECD_02439 0.44 -0.2 2,543,345 - ECD_02439 0.46 +0.0 2,543,411 - ECD_02439 0.50 -1.2 2,543,446 + ECD_02439 0.52 -1.5 2,543,447 - ECD_02439 0.52 -0.5 2,543,556 + ECD_02439 0.60 +0.3 2,543,638 + ECD_02439 0.65 -0.3 2,543,639 - ECD_02439 0.65 +0.4 2,543,876 + ECD_02439 0.81 -0.3 2,543,877 - ECD_02439 0.81 +0.4 2,543,929 + ECD_02439 0.84 +1.7 2,544,116 - -0.5 2,544,166 + -0.1 2,544,245 + +0.7 2,544,785 - ECD_02440 0.61 -0.7 2,544,785 - ECD_02440 0.61 -1.2 2,544,785 - ECD_02440 0.61 -2.3 2,544,820 + ECD_02440 0.64 +0.0 2,544,982 - ECD_02440 0.81 -0.3 2,545,064 - ECD_02440 0.89 -1.1 2,545,137 + -0.0 2,545,252 - +0.5 2,545,453 + +0.8 2,545,454 - -0.3 2,545,631 - ECD_02441 0.11 +0.5 2,545,634 - ECD_02441 0.11 -0.6 2,546,003 + ECD_02441 0.22 +0.7 2,546,004 - ECD_02441 0.22 +0.1 2,546,077 - ECD_02441 0.25 -0.7 2,546,081 + ECD_02441 0.25 -0.3 2,546,082 - ECD_02441 0.25 -0.0
Or see this region's nucleotide sequence