Strain Fitness in Escherichia coli BL21 around ECD_02440

Experiment: EV152

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02439 and ECD_02440 are separated by 22 nucleotidesECD_02440 and ECD_02441 are separated by 96 nucleotides ECD_02439: ECD_02439 - putative sugar ABC transporter ATPase, at 2,542,655 to 2,544,166 _02439 ECD_02440: ECD_02440 - putative sugar ABC transporter periplasmic binding protein, at 2,544,189 to 2,545,172 _02440 ECD_02441: ECD_02441 - DUF4380 domain-containing TPR repeat protein, at 2,545,269 to 2,548,550 _02441 Position (kb) 2544 2545 2546Strain fitness (log2 ratio) -2 -1 0 1at 2543.226 kb on + strand, within ECD_02439at 2543.313 kb on - strand, within ECD_02439at 2543.318 kb on - strand, within ECD_02439at 2543.326 kb on + strand, within ECD_02439at 2543.345 kb on - strand, within ECD_02439at 2543.411 kb on - strand, within ECD_02439at 2543.446 kb on + strand, within ECD_02439at 2543.447 kb on - strand, within ECD_02439at 2543.556 kb on + strand, within ECD_02439at 2543.638 kb on + strand, within ECD_02439at 2543.639 kb on - strand, within ECD_02439at 2543.876 kb on + strand, within ECD_02439at 2543.877 kb on - strand, within ECD_02439at 2543.929 kb on + strand, within ECD_02439at 2544.116 kb on - strandat 2544.166 kb on + strandat 2544.245 kb on + strandat 2544.785 kb on - strand, within ECD_02440at 2544.785 kb on - strand, within ECD_02440at 2544.785 kb on - strand, within ECD_02440at 2544.820 kb on + strand, within ECD_02440at 2544.982 kb on - strand, within ECD_02440at 2545.064 kb on - strand, within ECD_02440at 2545.137 kb on + strandat 2545.252 kb on - strandat 2545.453 kb on + strandat 2545.454 kb on - strandat 2545.631 kb on - strand, within ECD_02441at 2545.634 kb on - strand, within ECD_02441at 2546.003 kb on + strand, within ECD_02441at 2546.004 kb on - strand, within ECD_02441at 2546.077 kb on - strand, within ECD_02441at 2546.081 kb on + strand, within ECD_02441at 2546.082 kb on - strand, within ECD_02441

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Per-strain Table

Position Strand Gene LocusTag Fraction EV152
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2,543,226 + ECD_02439 0.38 -0.3
2,543,313 - ECD_02439 0.44 +0.7
2,543,318 - ECD_02439 0.44 +0.1
2,543,326 + ECD_02439 0.44 -0.2
2,543,345 - ECD_02439 0.46 +0.0
2,543,411 - ECD_02439 0.50 -1.2
2,543,446 + ECD_02439 0.52 -1.5
2,543,447 - ECD_02439 0.52 -0.5
2,543,556 + ECD_02439 0.60 +0.3
2,543,638 + ECD_02439 0.65 -0.3
2,543,639 - ECD_02439 0.65 +0.4
2,543,876 + ECD_02439 0.81 -0.3
2,543,877 - ECD_02439 0.81 +0.4
2,543,929 + ECD_02439 0.84 +1.7
2,544,116 - -0.5
2,544,166 + -0.1
2,544,245 + +0.7
2,544,785 - ECD_02440 0.61 -0.7
2,544,785 - ECD_02440 0.61 -1.2
2,544,785 - ECD_02440 0.61 -2.3
2,544,820 + ECD_02440 0.64 +0.0
2,544,982 - ECD_02440 0.81 -0.3
2,545,064 - ECD_02440 0.89 -1.1
2,545,137 + -0.0
2,545,252 - +0.5
2,545,453 + +0.8
2,545,454 - -0.3
2,545,631 - ECD_02441 0.11 +0.5
2,545,634 - ECD_02441 0.11 -0.6
2,546,003 + ECD_02441 0.22 +0.7
2,546,004 - ECD_02441 0.22 +0.1
2,546,077 - ECD_02441 0.25 -0.7
2,546,081 + ECD_02441 0.25 -0.3
2,546,082 - ECD_02441 0.25 -0.0

Or see this region's nucleotide sequence