Strain Fitness in Escherichia coli BL21 around ECD_02383

Experiment: EV152

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02381 and ECD_02382 overlap by 8 nucleotidesECD_02382 and ECD_02383 are separated by 29 nucleotidesECD_02383 and ECD_02384 are separated by 21 nucleotidesECD_02384 and ECD_02385 are separated by 37 nucleotides ECD_02381: ECD_02381 - hydrogenase 4, Fe-S subunit, at 2,475,187 to 2,475,945 _02381 ECD_02382: ECD_02382 - putative processing element hydrogenase 4, at 2,475,938 to 2,476,351 _02382 ECD_02383: ECD_02383 - hydrogenase-4 transcriptional activator, at 2,476,381 to 2,478,393 _02383 ECD_02384: ECD_02384 - putative formate transporter, at 2,478,415 to 2,479,263 _02384 ECD_02385: ECD_02385 - putative UPF0118 family inner membrane permease, at 2,479,301 to 2,480,362 _02385 Position (kb) 2476 2477 2478 2479Strain fitness (log2 ratio) -2 -1 0 1at 2475.415 kb on - strand, within ECD_02381at 2475.454 kb on - strand, within ECD_02381at 2475.473 kb on - strand, within ECD_02381at 2475.711 kb on + strand, within ECD_02381at 2475.711 kb on + strand, within ECD_02381at 2475.711 kb on + strand, within ECD_02381at 2475.830 kb on + strand, within ECD_02381at 2475.900 kb on + strandat 2475.901 kb on - strandat 2476.034 kb on + strand, within ECD_02382at 2476.034 kb on + strand, within ECD_02382at 2476.034 kb on + strand, within ECD_02382at 2476.035 kb on - strand, within ECD_02382at 2476.325 kb on + strandat 2476.386 kb on + strandat 2476.425 kb on - strandat 2476.570 kb on + strandat 2476.571 kb on - strandat 2476.619 kb on - strand, within ECD_02383at 2476.669 kb on - strand, within ECD_02383at 2476.858 kb on - strand, within ECD_02383at 2476.860 kb on + strand, within ECD_02383at 2477.043 kb on + strand, within ECD_02383at 2477.043 kb on + strand, within ECD_02383at 2477.144 kb on + strand, within ECD_02383at 2477.144 kb on + strand, within ECD_02383at 2477.147 kb on + strand, within ECD_02383at 2477.148 kb on - strand, within ECD_02383at 2477.148 kb on - strand, within ECD_02383at 2477.187 kb on + strand, within ECD_02383at 2477.188 kb on - strand, within ECD_02383at 2477.196 kb on + strand, within ECD_02383at 2477.211 kb on + strand, within ECD_02383at 2477.212 kb on - strand, within ECD_02383at 2477.212 kb on - strand, within ECD_02383at 2477.212 kb on - strand, within ECD_02383at 2477.239 kb on - strand, within ECD_02383at 2477.279 kb on + strand, within ECD_02383at 2477.279 kb on + strand, within ECD_02383at 2477.280 kb on - strand, within ECD_02383at 2477.280 kb on - strand, within ECD_02383at 2477.280 kb on - strand, within ECD_02383at 2477.421 kb on + strand, within ECD_02383at 2477.421 kb on + strand, within ECD_02383at 2477.422 kb on - strand, within ECD_02383at 2477.422 kb on - strand, within ECD_02383at 2477.425 kb on + strand, within ECD_02383at 2477.425 kb on + strand, within ECD_02383at 2477.450 kb on + strand, within ECD_02383at 2477.462 kb on + strand, within ECD_02383at 2477.462 kb on + strand, within ECD_02383at 2477.466 kb on + strand, within ECD_02383at 2477.487 kb on + strand, within ECD_02383at 2477.488 kb on - strand, within ECD_02383at 2477.553 kb on + strand, within ECD_02383at 2477.766 kb on - strand, within ECD_02383at 2478.269 kb on + strandat 2478.392 kb on - strandat 2478.410 kb on + strandat 2478.410 kb on + strandat 2478.410 kb on + strandat 2478.410 kb on + strandat 2478.410 kb on + strandat 2478.411 kb on - strandat 2478.411 kb on - strandat 2478.411 kb on - strandat 2478.726 kb on + strand, within ECD_02384at 2478.726 kb on + strand, within ECD_02384at 2479.161 kb on + strand, within ECD_02384at 2479.225 kb on - strandat 2479.243 kb on + strandat 2479.243 kb on + strandat 2479.244 kb on - strandat 2479.244 kb on - strandat 2479.244 kb on - strandat 2479.247 kb on + strandat 2479.247 kb on + strandat 2479.313 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV152
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2,475,415 - ECD_02381 0.30 -1.1
2,475,454 - ECD_02381 0.35 +0.2
2,475,473 - ECD_02381 0.38 -0.4
2,475,711 + ECD_02381 0.69 +0.3
2,475,711 + ECD_02381 0.69 +0.6
2,475,711 + ECD_02381 0.69 -0.2
2,475,830 + ECD_02381 0.85 +0.7
2,475,900 + +0.0
2,475,901 - +0.3
2,476,034 + ECD_02382 0.23 -1.3
2,476,034 + ECD_02382 0.23 +0.3
2,476,034 + ECD_02382 0.23 -2.1
2,476,035 - ECD_02382 0.23 +0.6
2,476,325 + -0.1
2,476,386 + -0.4
2,476,425 - -0.3
2,476,570 + +0.7
2,476,571 - +0.9
2,476,619 - ECD_02383 0.12 -0.8
2,476,669 - ECD_02383 0.14 +0.7
2,476,858 - ECD_02383 0.24 -0.3
2,476,860 + ECD_02383 0.24 -1.6
2,477,043 + ECD_02383 0.33 +0.3
2,477,043 + ECD_02383 0.33 +0.7
2,477,144 + ECD_02383 0.38 +0.7
2,477,144 + ECD_02383 0.38 +0.7
2,477,147 + ECD_02383 0.38 -0.4
2,477,148 - ECD_02383 0.38 +1.2
2,477,148 - ECD_02383 0.38 -1.1
2,477,187 + ECD_02383 0.40 +0.3
2,477,188 - ECD_02383 0.40 -0.2
2,477,196 + ECD_02383 0.40 +0.1
2,477,211 + ECD_02383 0.41 +0.4
2,477,212 - ECD_02383 0.41 -2.3
2,477,212 - ECD_02383 0.41 +0.4
2,477,212 - ECD_02383 0.41 +0.5
2,477,239 - ECD_02383 0.43 -1.1
2,477,279 + ECD_02383 0.45 +0.4
2,477,279 + ECD_02383 0.45 -0.6
2,477,280 - ECD_02383 0.45 -0.6
2,477,280 - ECD_02383 0.45 +0.7
2,477,280 - ECD_02383 0.45 -1.8
2,477,421 + ECD_02383 0.52 +0.5
2,477,421 + ECD_02383 0.52 -0.5
2,477,422 - ECD_02383 0.52 -0.3
2,477,422 - ECD_02383 0.52 +0.2
2,477,425 + ECD_02383 0.52 -0.5
2,477,425 + ECD_02383 0.52 +0.2
2,477,450 + ECD_02383 0.53 -0.1
2,477,462 + ECD_02383 0.54 +1.7
2,477,462 + ECD_02383 0.54 +0.5
2,477,466 + ECD_02383 0.54 +0.2
2,477,487 + ECD_02383 0.55 +0.0
2,477,488 - ECD_02383 0.55 -0.2
2,477,553 + ECD_02383 0.58 -0.4
2,477,766 - ECD_02383 0.69 -1.0
2,478,269 + -2.1
2,478,392 - +0.5
2,478,410 + +0.5
2,478,410 + -0.7
2,478,410 + +0.2
2,478,410 + -0.8
2,478,410 + +0.3
2,478,411 - +0.7
2,478,411 - +0.2
2,478,411 - -0.1
2,478,726 + ECD_02384 0.37 +0.3
2,478,726 + ECD_02384 0.37 +0.7
2,479,161 + ECD_02384 0.88 -0.5
2,479,225 - -1.1
2,479,243 + -0.2
2,479,243 + +0.3
2,479,244 - -0.3
2,479,244 - +0.1
2,479,244 - -0.6
2,479,247 + -0.1
2,479,247 + +0.3
2,479,313 + +0.7

Or see this region's nucleotide sequence