Experiment: EV152
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02376 and ECD_02377 are separated by 14 nucleotides ECD_02377 and ECD_02378 are separated by 4 nucleotides
ECD_02376: ECD_02376 - hydrogenase 4, membrane subunit, at 2,469,385 to 2,470,734
_02376
ECD_02377: ECD_02377 - hydrogenase 4, membrane subunit, at 2,470,749 to 2,471,399
_02377
ECD_02378: ECD_02378 - hydrogenase 4, membrane subunit, at 2,471,404 to 2,472,984
_02378
Position (kb)
2469
2470
2471 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2468.426 kb on - strand at 2468.439 kb on + strand at 2468.440 kb on - strand at 2468.440 kb on - strand at 2468.450 kb on - strand at 2468.530 kb on + strand at 2468.531 kb on - strand at 2468.531 kb on - strand at 2468.533 kb on - strand at 2468.571 kb on + strand at 2468.611 kb on - strand at 2468.614 kb on + strand at 2468.615 kb on - strand at 2468.663 kb on - strand at 2468.845 kb on - strand at 2469.299 kb on - strand at 2469.580 kb on + strand, within ECD_02376 at 2469.794 kb on + strand, within ECD_02376 at 2469.807 kb on + strand, within ECD_02376 at 2469.808 kb on - strand, within ECD_02376 at 2469.835 kb on + strand, within ECD_02376 at 2469.969 kb on - strand, within ECD_02376 at 2470.060 kb on + strand, within ECD_02376 at 2470.165 kb on + strand, within ECD_02376 at 2470.165 kb on + strand, within ECD_02376 at 2470.166 kb on - strand, within ECD_02376 at 2470.166 kb on - strand, within ECD_02376 at 2470.334 kb on + strand, within ECD_02376 at 2470.352 kb on - strand, within ECD_02376 at 2470.392 kb on - strand, within ECD_02376 at 2470.713 kb on - strand at 2470.733 kb on - strand at 2470.735 kb on + strand at 2470.735 kb on + strand at 2470.760 kb on + strand at 2470.761 kb on - strand at 2471.144 kb on - strand, within ECD_02377 at 2471.284 kb on + strand, within ECD_02377 at 2471.284 kb on + strand, within ECD_02377 at 2471.352 kb on - strand at 2471.513 kb on + strand at 2471.514 kb on - strand at 2471.516 kb on + strand at 2471.520 kb on + strand at 2471.520 kb on + strand at 2471.520 kb on + strand at 2471.520 kb on + strand at 2471.520 kb on + strand at 2471.521 kb on - strand at 2471.521 kb on - strand at 2471.521 kb on - strand at 2471.680 kb on + strand, within ECD_02378
Per-strain Table
Position Strand Gene LocusTag Fraction EV152 remove 2,468,426 - +0.2 2,468,439 + +0.0 2,468,440 - -0.2 2,468,440 - +0.9 2,468,450 - +0.2 2,468,530 + +2.0 2,468,531 - +0.5 2,468,531 - -0.9 2,468,533 - -0.1 2,468,571 + +1.4 2,468,611 - +1.1 2,468,614 + +0.4 2,468,615 - +1.4 2,468,663 - -0.4 2,468,845 - +0.1 2,469,299 - +0.0 2,469,580 + ECD_02376 0.14 +0.4 2,469,794 + ECD_02376 0.30 +0.8 2,469,807 + ECD_02376 0.31 +1.0 2,469,808 - ECD_02376 0.31 +0.2 2,469,835 + ECD_02376 0.33 +0.8 2,469,969 - ECD_02376 0.43 +2.2 2,470,060 + ECD_02376 0.50 +0.2 2,470,165 + ECD_02376 0.58 -0.2 2,470,165 + ECD_02376 0.58 -0.2 2,470,166 - ECD_02376 0.58 -0.2 2,470,166 - ECD_02376 0.58 +0.6 2,470,334 + ECD_02376 0.70 -0.1 2,470,352 - ECD_02376 0.72 +1.7 2,470,392 - ECD_02376 0.75 -0.3 2,470,713 - +0.5 2,470,733 - +0.6 2,470,735 + +1.1 2,470,735 + -0.7 2,470,760 + -0.4 2,470,761 - +0.5 2,471,144 - ECD_02377 0.61 -1.8 2,471,284 + ECD_02377 0.82 +0.3 2,471,284 + ECD_02377 0.82 +0.3 2,471,352 - +1.4 2,471,513 + +0.6 2,471,514 - -0.4 2,471,516 + +0.5 2,471,520 + +0.3 2,471,520 + +0.5 2,471,520 + +0.7 2,471,520 + -0.1 2,471,520 + -0.3 2,471,521 - -0.3 2,471,521 - -0.4 2,471,521 - +0.5 2,471,680 + ECD_02378 0.17 -0.3
Or see this region's nucleotide sequence