Experiment: EV152
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02075 and ECD_02076 overlap by 7 nucleotides ECD_02076 and ECD_02077 are separated by 242 nucleotides
ECD_02075: ECD_02075 - dihydropyrimidine dehydrogenase, NADH-dependent, subunit N, at 2,128,937 to 2,130,175
_02075
ECD_02076: ECD_02076 - dihydropyrimidine dehydrogenase, NADH-dependent, subunit C, at 2,130,169 to 2,131,404
_02076
ECD_02077: ECD_02077 - methyl-galactoside transporter subunit, at 2,131,647 to 2,132,657
_02077
Position (kb)
2130
2131
2132 Strain fitness (log2 ratio)
-1
0
1 at 2129.706 kb on + strand, within ECD_02075 at 2129.800 kb on - strand, within ECD_02075 at 2129.800 kb on - strand, within ECD_02075 at 2129.916 kb on + strand, within ECD_02075 at 2129.916 kb on + strand, within ECD_02075 at 2129.916 kb on + strand, within ECD_02075 at 2129.985 kb on + strand, within ECD_02075 at 2130.150 kb on - strand at 2130.643 kb on + strand, within ECD_02076 at 2130.801 kb on + strand, within ECD_02076 at 2131.695 kb on - strand at 2131.872 kb on - strand, within ECD_02077 at 2132.093 kb on - strand, within ECD_02077 at 2132.105 kb on - strand, within ECD_02077 at 2132.150 kb on + strand, within ECD_02077 at 2132.151 kb on - strand, within ECD_02077
Per-strain Table
Position Strand Gene LocusTag Fraction EV152 remove 2,129,706 + ECD_02075 0.62 -1.3 2,129,800 - ECD_02075 0.70 +0.2 2,129,800 - ECD_02075 0.70 -0.3 2,129,916 + ECD_02075 0.79 -0.3 2,129,916 + ECD_02075 0.79 -0.9 2,129,916 + ECD_02075 0.79 +0.3 2,129,985 + ECD_02075 0.85 +0.5 2,130,150 - -0.0 2,130,643 + ECD_02076 0.38 -0.6 2,130,801 + ECD_02076 0.51 -0.6 2,131,695 - +0.3 2,131,872 - ECD_02077 0.22 +0.7 2,132,093 - ECD_02077 0.44 -0.6 2,132,105 - ECD_02077 0.45 -0.1 2,132,150 + ECD_02077 0.50 -1.5 2,132,151 - ECD_02077 0.50 +0.4
Or see this region's nucleotide sequence